Rw1G019660

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002773
Physical Location & Seq
Forward (+)
42810000 .. 42813158
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019660.1

Sequence Viewer

Length: 969 bp
ATGATTTATAACTTATGGTTCAACGATGATGGGAGTGCAGAGCTGGACTTTGATACTGATCCAGAGGATATTCGTATTAGTGGGGATACCAAAAAAGTTAATGCTAGACTTGGATGGAAAGAAGTCAATGAACAGCACATTGCTAATCGTTTCCATCACTCTCTCCGTGTTTACTTGTCTATCTTGTACTTGCGTATACCAGCAACCTTTCAAATAATACTGCGTGGGAGAGTTGTTGGGCATCATAACATTGCTGATGACCTAAAATTTCAAGAATATATCTTGATAGACCTCAAACTGGAGGGTCAAGTTATTACTACTATTGGATTTCTAAACGATGCTCCATATGTCAGTTACCACGGTTTCAATGTTTATCACAAGAATCGTCTGATACTGCCGCATTGGCAGGTTGTGAGCTATTTAGACAGCAGGGGTCGTGAAGTTGTTGGTGTTTTGGAAGCAGATTTTGTTGAGCCGAGTCATAACAAACAAGATTTTGAGAGAACTTCTCTTTTTCAGAAACTTGAAGTCCGTTTGAAGGAGATGACTGGCGTTCATCAATCTATCACATTGGGCCAAAGTTCCCCTGCTACACTAGGAAAATCTGGGCCATCAATTTCAAGCACCTTAAGGAAATCTGTACAAGGAACGATGAAGAGGAAAGAACATGATGATATTCTGCCGGTTGAAAATGTGAAAGGGGCCAAGGTGATCAATACTGGGAAAAGTCAGTCTGTACAGCTGGGGAATCCTACTGGAAATCAGCTGAAAGATCAAGAGGCTAAAAATCTGATGCAAGAGAACAACAAGCTGCGATCTAAATGCTTGGAATATGAGAAGAGGGAGGAGAAGCTAAATCTTAAGGTGGCACAGCTTAAGAAGGAAATGATAGACGTTGATGATGAATACTCATTTATGTTGGCTGAATTAGAAGCGTTGGGGGATGTCAAGGAAGAAAAGGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

322

Amino Acids

36.79

Weight (kDa)

6.28

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Morc6_S5 PF17942 53 - 183 2.6e-50 Morc6 ribosomal protein S5 domain 2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
Acc36I ACCTGC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 196
AciI CCGC 1 cut(s) 398
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 4 cut(s) 188, 642, 738, 964
AfiI CCNNNNNNNGG 2 cut(s) 298, 538
AflII CTTAAG 3 cut(s) 628, 860, 875
AgsI TTSAA 8 cut(s) 22, 212, 272, 367, 527, 538, 621, 689
AluBI AGCT 7 cut(s) 43, 417, 742, 766, 811, 853, 874
AluI AGCT 7 cut(s) 43, 417, 742, 766, 811, 853, 874
AlwI GGATC 1 cut(s) 53
AoxI GGCC 3 cut(s) 574, 608, 702
ApeKI GCWGC 1 cut(s) 811
ApoI RAATTY 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 574, 608, 702
AsuHPI GGTGA 1 cut(s) 721
BbvI GCAGC 1 cut(s) 798
BccI CCATC 4 cut(s) 23, 108, 162, 619
BcgI CGANNNNNNTGC 2 cut(s) 804, 838
BciVI GTATCC 1 cut(s) 79
BclI TGATCA 1 cut(s) 711
BfaI CTAG 2 cut(s) 105, 596
BfrI CTTAAG 3 cut(s) 628, 860, 875
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 1 cut(s) 79
BglI GCCNNNNNGGC 1 cut(s) 403
BisI GCNGC 2 cut(s) 398, 812
BlsI GCNGC 2 cut(s) 399, 813
BmgT120I GGNCC 3 cut(s) 574, 608, 702
BmiI GGNNCC 1 cut(s) 703
BmrI ACTGGG 1 cut(s) 729
BmsI GCATC 3 cut(s) 250, 328, 783
BmuI ACTGGG 1 cut(s) 729
BplI GAGNNNNNCTC 2 cut(s) 493, 525
BpmI CTGGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 358, 705
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 538
Bse118I RCCGGY 1 cut(s) 682
Bse1I ACTGG 4 cut(s) 303, 553, 724, 760
Bse3DI GCAATG 2 cut(s) 138, 249
Bse8I GATNNNNATC 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 358, 705
BseGI GGATG 2 cut(s) 119, 949
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 298, 538
BseMI GCAATG 2 cut(s) 138, 249
BseNI ACTGG 4 cut(s) 303, 553, 724, 760
BseRI GAGGAG 1 cut(s) 860
BseXI GCAGC 1 cut(s) 798
BseYI CCCAGC 1 cut(s) 742
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 3 cut(s) 576, 610, 704
BsiSI CCGG 1 cut(s) 683
BslI CCNNNNNNNGG 2 cut(s) 298, 538
BsnI GGCC 3 cut(s) 576, 610, 704
Bsp1407I TGTACA 2 cut(s) 640, 736
Bsp143I GATC 4 cut(s) 58, 711, 772, 815
BspACI CCGC 1 cut(s) 398
BspANI GGCC 3 cut(s) 576, 610, 704
BspLI GGNNCC 1 cut(s) 703
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 1 cut(s) 53
BspTI CTTAAG 3 cut(s) 628, 860, 875
BsrDI GCAATG 2 cut(s) 138, 249
BsrFI RCCGGY 1 cut(s) 682
BsrGI TGTACA 2 cut(s) 640, 736
BsrI ACTGG 4 cut(s) 303, 553, 724, 760
BssAI RCCGGY 1 cut(s) 682
BssECI CCNNGG 2 cut(s) 358, 705
BssMI GATC 4 cut(s) 58, 711, 772, 815
BssNAI GTATAC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 705
Bst1107I GTATAC 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 650, 833
BstAFI CTTAAG 3 cut(s) 628, 860, 875
BstAUI TGTACA 2 cut(s) 640, 736
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 2 cut(s) 119, 949
BstKTI GATC 4 cut(s) 61, 714, 775, 818
BstMBI GATC 4 cut(s) 58, 711, 772, 815
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 798
BstZ17I GTATAC 1 cut(s) 197
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 3 cut(s) 576, 610, 704
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 2 cut(s) 119, 949
BveI ACCTGC 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 682
Cfr13I GGNCC 3 cut(s) 574, 608, 702
Csp6I GTAC 4 cut(s) 187, 641, 737, 963
CviAII CATG 1 cut(s) 668
CviQI GTAC 4 cut(s) 187, 641, 737, 963
DpnI GATC 4 cut(s) 60, 713, 774, 817
DpnII GATC 4 cut(s) 58, 711, 772, 815
Eam1104I CTCTTC 2 cut(s) 650, 833
EarI CTCTTC 2 cut(s) 650, 833
Eco130I CCWWGG 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 1 cut(s) 671
FatI CATG 1 cut(s) 667
FauNDI CATATG 1 cut(s) 346
FbaI TGATCA 1 cut(s) 711
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 398, 812
FokI GGATG 2 cut(s) 126, 956
Fsp4HI GCNGC 2 cut(s) 398, 812
FspBI CTAG 2 cut(s) 105, 596
GluI GCNGC 2 cut(s) 398, 812
GsaI CCCAGC 1 cut(s) 746
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 3 cut(s) 576, 610, 704
HapII CCGG 1 cut(s) 683
Hin1II CATG 1 cut(s) 671
HinfI GANTC 3 cut(s) 382, 478, 748
HpaII CCGG 1 cut(s) 683
HphI GGTGA 1 cut(s) 721
Hpy166II GTNNAC 2 cut(s) 172, 197
Hpy188I TCNGA 3 cut(s) 390, 519, 792
Hpy188III TCNNGA 5 cut(s) 62, 272, 283, 437, 776
Hpy8I GTNNAC 2 cut(s) 172, 197
HpyAV CCTTC 2 cut(s) 532, 874
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 894
HpyCH4V TGCA 2 cut(s) 38, 796
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpySE526I ACGT 1 cut(s) 894
Hsp92II CATG 1 cut(s) 671
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 4 cut(s) 58, 711, 772, 815
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 1 cut(s) 798
LweI GCATC 3 cut(s) 250, 328, 783
MaeI CTAG 2 cut(s) 105, 596
MaeII ACGT 1 cut(s) 894
MaeIII GTNAC 1 cut(s) 353
MalI GATC 4 cut(s) 60, 713, 774, 817
MboI GATC 4 cut(s) 58, 711, 772, 815
MboII GAAGA 3 cut(s) 667, 850, 965
MluCI AATT 3 cut(s) 266, 615, 926
MlyI GAGTC 1 cut(s) 487
MnlI CCTC 7 cut(s) 58, 295, 302, 651, 772, 834, 838
MseI TTAA 4 cut(s) 99, 629, 861, 876
MspA1I CMGCKG 2 cut(s) 742, 766
MspCI CTTAAG 3 cut(s) 628, 860, 875
MspI CCGG 1 cut(s) 683
MwoI GCNNNNNNNGC 1 cut(s) 403
NdeI CATATG 1 cut(s) 346
NdeII GATC 4 cut(s) 58, 711, 772, 815
NlaIII CATG 1 cut(s) 671
NlaIV GGNNCC 1 cut(s) 703
NmeAIII GCCGAG 1 cut(s) 501
PfeI GAWTC 2 cut(s) 382, 748
PkrI GCNGC 2 cut(s) 399, 813
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
PsiI TTATAA 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 742
PspN4I GGNNCC 1 cut(s) 703
PspPI GGNCC 3 cut(s) 574, 608, 702
PvuII CAGCTG 2 cut(s) 742, 766
RsaI GTAC 4 cut(s) 188, 642, 738, 964
RsaNI GTAC 4 cut(s) 187, 641, 737, 963
SaqAI TTAA 4 cut(s) 99, 629, 861, 876
SatI GCNGC 2 cut(s) 398, 812
Sau3AI GATC 4 cut(s) 58, 711, 772, 815
Sau96I GGNCC 3 cut(s) 574, 608, 702
SchI GAGTC 1 cut(s) 487
SfaNI GCATC 3 cut(s) 250, 328, 783
SmlI CTYRAG 3 cut(s) 628, 860, 875
SmoI CTYRAG 3 cut(s) 628, 860, 875
Sse9I AATT 3 cut(s) 266, 615, 926
SsiI CCGC 1 cut(s) 398
SspMI CTAG 2 cut(s) 105, 596
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 897
TasI AATT 3 cut(s) 266, 615, 926
TatI WGTACW 3 cut(s) 186, 640, 736
TauI GCSGC 1 cut(s) 400
TfiI GAWTC 2 cut(s) 382, 748
Tru1I TTAA 4 cut(s) 99, 629, 861, 876
Tru9I TTAA 4 cut(s) 99, 629, 861, 876
TseI GCWGC 1 cut(s) 811
TspDTI ATGAA 4 cut(s) 144, 545, 668, 918
TspGWI ACGGA 2 cut(s) 155, 521
Vha464I CTTAAG 3 cut(s) 628, 860, 875
XapI RAATTY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 196
XspI CTAG 2 cut(s) 105, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.