Rmu_sc0017081.1_g000007

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017081.1
OG0002773
Physical Location & Seq
Forward (+)
17321 .. 18124
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017081.1_g000007.1.cds

Sequence Viewer

Length: 414 bp
atgtctgtgaagtgtcttgatgactggatgatgtgtctattggactttggcagggattatcactgtggactgattgggtatcaggtaaagaaaaagcttaaaccagtgaccccacaaagtggcgttcgtcaatccatcacattgggccaaagttcccctgctcttggtagtaaaaacacagtacttggaaaatctgggccatcaatttcaagcaccttaaggaaatctgtacaaggaactatgaagaggaaagaacatgatgatattctgccagttaaaaatgtgaaaggggccaaggtgatcaatactgggaaaagtcagtctgtagagctggggaatcctactggaaatcagctgaaagatcaagaggctaaaaatctgatgcacgagaacaacaagctgcgatctaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

137

Amino Acids

15.01

Weight (kDa)

9.85

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 2 cut(s) 183, 231
AfiI CCNNNNNNNGG 2 cut(s) 119, 164
AflII CTTAAG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 4 cut(s) 97, 331, 355, 400
AluI AGCT 4 cut(s) 97, 331, 355, 400
AoxI GGCC 3 cut(s) 145, 197, 291
ApeKI GCWGC 1 cut(s) 400
AspS9I GGNCC 3 cut(s) 145, 197, 291
AsuHPI GGTGA 1 cut(s) 310
BauI CACGAG 1 cut(s) 386
BbvI GCAGC 1 cut(s) 387
BccI CCATC 2 cut(s) 143, 208
BclI TGATCA 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
BmcAI AGTACT 1 cut(s) 183
BmgT120I GGNCC 3 cut(s) 145, 197, 291
BmiI GGNNCC 1 cut(s) 292
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 164
Bse1I ACTGG 5 cut(s) 29, 104, 272, 313, 349
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 119, 164
BseNI ACTGG 5 cut(s) 29, 104, 272, 313, 349
BseXI GCAGC 1 cut(s) 387
BseYI CCCAGC 1 cut(s) 331
BshFI GGCC 3 cut(s) 147, 199, 293
BslI CCNNNNNNNGG 2 cut(s) 119, 164
BsnI GGCC 3 cut(s) 147, 199, 293
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 3 cut(s) 300, 361, 404
BspANI GGCC 3 cut(s) 147, 199, 293
BspLI GGNNCC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 229
BsrI ACTGG 5 cut(s) 29, 104, 272, 313, 349
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 3 cut(s) 300, 361, 404
BssSI CACGAG 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 386
Bst4CI ACNGT 2 cut(s) 65, 181
Bst6I CTCTTC 1 cut(s) 239
BstAFI CTTAAG 1 cut(s) 217
BstAUI TGTACA 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 3 cut(s) 303, 364, 407
BstMBI GATC 3 cut(s) 300, 361, 404
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 387
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 3 cut(s) 147, 199, 293
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 61, 111
Cfr13I GGNCC 3 cut(s) 145, 197, 291
Csp6I GTAC 2 cut(s) 182, 230
CviAII CATG 1 cut(s) 257
CviJI RGCY 8 cut(s) 97, 147, 199, 293, 331, 355, 371, 400
CviKI_1 RGCY 8 cut(s) 97, 147, 199, 293, 331, 355, 371, 400
CviQI GTAC 2 cut(s) 182, 230
DdeI CTNAG 1 cut(s) 408
DpnI GATC 3 cut(s) 302, 363, 406
DpnII GATC 3 cut(s) 300, 361, 404
DraIII CACNNNGTG 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 260
FaiI YATR 2 cut(s) 242, 258
FatI CATG 1 cut(s) 256
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 401
GluI GCNGC 1 cut(s) 401
GsaI CCCAGC 1 cut(s) 335
HaeIII GGCC 3 cut(s) 147, 199, 293
Hin1II CATG 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 337
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 2 cut(s) 17, 365
Hpy8I GTNNAC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 65, 181
HpyCH4V TGCA 1 cut(s) 385
HpyF3I CTNAG 1 cut(s) 408
Hsp92II CATG 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 3 cut(s) 300, 361, 404
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 302, 363, 406
MboI GATC 3 cut(s) 300, 361, 404
MboII GAAGA 1 cut(s) 256
MluCI AATT 1 cut(s) 204
MnlI CCTC 2 cut(s) 240, 361
MseI TTAA 3 cut(s) 99, 218, 276
MspA1I CMGCKG 1 cut(s) 355
MspCI CTTAAG 1 cut(s) 217
NdeII GATC 3 cut(s) 300, 361, 404
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 3 cut(s) 145, 197, 291
PvuII CAGCTG 1 cut(s) 355
RsaI GTAC 2 cut(s) 183, 231
RsaNI GTAC 2 cut(s) 182, 230
SaqAI TTAA 3 cut(s) 99, 218, 276
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 3 cut(s) 300, 361, 404
Sau96I GGNCC 3 cut(s) 145, 197, 291
ScaI AGTACT 1 cut(s) 183
SetI ASST 7 cut(s) 87, 99, 218, 300, 333, 357, 402
SfaNI GCATC 1 cut(s) 372
SfcI CTRYAG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 1 cut(s) 204
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 65, 181
TasI AATT 1 cut(s) 204
TatI WGTACW 2 cut(s) 181, 229
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 3 cut(s) 99, 218, 276
Tru9I TTAA 3 cut(s) 99, 218, 276
TscAI CASTG 2 cut(s) 68, 111
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 2 cut(s) 68, 111
Van91I CCANNNNNTGG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 217
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.