Rmu_ssc0000343.1_g000032

MORC family CW-type zinc finger protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000343.1
Physical Location & Seq
Forward (+)
113193 .. 124143
10951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000343.1_g000032.1.cds

Sequence Viewer

Length: 1644 bp
atgaccttgatagacgttgtggacttatctagtgatgatgaacttggagaggtggatgtgaaacctgttaagctggagctagatgttgttggaagacatgaagagaagtgtaaagctcaacctgtgaagaataaattttcaaaaacccaacgtactatacaagattctgaagaaaataggagctcaaatgctttaagtactggtcacagtagttccagtatattagaccaagggcagtctcctgttgatgacacaggcatctcttcagcatcgcctatatgtccagcaccactttgtcggcaattttggaaagctgggaactacaatgatggcatcggttctaaagccacttttcaaaatggcaaaaactatctacatgtccaccccatgtttcttcactcgaatgccacctcacataaatgggcctttggtgccatagcagaactccttgacaatgcagttgatgagatccaaaatggggccacttttgtcaatgtagataaaatctcaaatccaaaggatggaagcccagcattgttaattcaagatgatggtaatggcatggaacctgaagctatgcgccgctgtatgagttttgggttttcagataagaagtcgaaatcagccattggccaatatggtaatggcttcaagaccagtactatgagacttggtgcggatgtcattgtattcagccgccaccaggataagaggacattgactcaaagcattggtcttctctcttacacatttttggcacgaacaggacatgatagaatagtagtaccgatggtggattacgaattcaaccctacaactgagacattagatataatgcacggcagagaacattttatgtctaatctctccttgctgctacagtggtctccattttcaacagaggctgagctactgaaacaatttaatgacattggagctcatgggacaaaagttatgatttataacttatggttcaacgatgatgggagtgcagagctggacttcgatactgatcccgaggatattcgtattagtggggataccaaaaaagttaatgctagacttggatggaaagaagtcaatgaacagcacattgctaatcgtttccatcactctctccgtgtttacttgtctatcttgtacttgcgtataccagcaacctttcaaataatactgcgtgggagagttgttgagcatcataacattgctgatgacctaaaatttcaagaatatatcttgtatagacctcaaactgggggtactgtggagggtcaagttattacgactattggatttctaaacgatgctccatatgtcagttaccacggcttcaatgtttatcacaagaatcgtctgatactgccgtattggcaggttgtgagctatttagacagcaggggtcgtggagttgttggtgttttggaagcagattttgttgagccgagtcataacaaacaagattttgagagaacttctttttttttcagaaacttgaaatgcttggaatatgacaagagggaggaggaactaaatcttaaggtggcacagcttaagaaggaaatgaaagacgttgatgatgaatactctctaatgttggctgaattagaagcgttgggggatgtcaaggaagaaaagggtacataa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

547

Amino Acids

61.78

Weight (kDa)

5.54

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 963
Acc36I ACCTGC 1 cut(s) 1363
AccB1I GGYRCC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 521
AccI GTMKAC 1 cut(s) 1150
AciI CCGC 3 cut(s) 583, 677, 697
AclWI GGATC 2 cut(s) 463, 1007
AcoI YGGCCR 1 cut(s) 631
AcsI RAATTY 3 cut(s) 134, 803, 1220
AcuI CTGAAG 3 cut(s) 189, 249, 591
AfaI GTAC 7 cut(s) 154, 199, 661, 786, 1142, 1261, 1639
AfiI CCNNNNNNNGG 4 cut(s) 478, 521, 703, 1253
AflII CTTAAG 2 cut(s) 1535, 1550
AflIII ACRYGT 1 cut(s) 376
AjnI CCWGG 1 cut(s) 702
Alw21I GWGCWC 2 cut(s) 185, 940
Alw26I GTCTC 4 cut(s) 243, 661, 815, 891
AlwI GGATC 2 cut(s) 463, 1007
AlwNI CAGNNNCTG 1 cut(s) 905
Ama87I CYCGRG 1 cut(s) 1016
AoxI GGCC 3 cut(s) 423, 480, 631
ApeKI GCWGC 1 cut(s) 874
ApoI RAATTY 3 cut(s) 134, 803, 1220
ArsI GACNNNNNNTTYG 2 cut(s) 718, 750
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 2 cut(s) 423, 480
AvaI CYCGRG 1 cut(s) 1016
BaeI ACNNNNGTAYC 2 cut(s) 1349, 1382
BalI TGGCCA 1 cut(s) 633
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 2 cut(s) 185, 940
BbsI GAAGAC 2 cut(s) 100, 728
Bbv12I GWGCWC 2 cut(s) 185, 940
BbvI GCAGC 1 cut(s) 861
BccI CCATC 7 cut(s) 323, 515, 545, 784, 977, 1062, 1116
BceAI ACGGC 3 cut(s) 856, 1342, 1348
BciT130I CCWGG 1 cut(s) 704
BciVI GTATCC 1 cut(s) 1033
BcoDI GTCTC 4 cut(s) 243, 661, 815, 891
BfaI CTAG 3 cut(s) 30, 80, 1059
BfmI CTRYAG 1 cut(s) 878
BfrI CTTAAG 2 cut(s) 1535, 1550
BfuAI ACCTGC 1 cut(s) 1363
BfuI GTATCC 1 cut(s) 1033
BglI GCCNNNNNGGC 1 cut(s) 1369
BisI GCNGC 3 cut(s) 583, 697, 875
BlpI GCTNAGC 1 cut(s) 906
BlsI GCNGC 3 cut(s) 584, 698, 876
BmcAI AGTACT 2 cut(s) 199, 661
Bme1390I CCNGG 1 cut(s) 704
BmeT110I CYCGRG 1 cut(s) 1016
BmgT120I GGNCC 2 cut(s) 423, 480
BmiI GGNNCC 3 cut(s) 433, 481, 567
BmrFI CCNGG 1 cut(s) 704
BmrI ACTGGG 1 cut(s) 1263
BmsI GCATC 5 cut(s) 267, 278, 342, 1204, 1294
BmuI ACTGGG 1 cut(s) 1263
BpiI GAAGAC 2 cut(s) 100, 728
BpmI CTGGAG 1 cut(s) 95
Bpu1102I GCTNAGC 1 cut(s) 906
BsaBI GATNNNNATC 1 cut(s) 1011
BsaI GGTCTC 1 cut(s) 891
BsaJI CCNNGG 3 cut(s) 229, 1017, 1324
Bsc4I CCNNNNNNNGG 4 cut(s) 478, 521, 703, 1253
Bse1I ACTGG 4 cut(s) 205, 216, 657, 1258
Bse3DI GCAATG 2 cut(s) 1092, 1203
Bse8I GATNNNNATC 1 cut(s) 1011
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 3 cut(s) 229, 1017, 1324
BseGI GGATG 5 cut(s) 61, 526, 685, 1073, 1624
BseJI GATNNNNATC 1 cut(s) 1011
BseLI CCNNNNNNNGG 4 cut(s) 478, 521, 703, 1253
BseMI GCAATG 2 cut(s) 1092, 1203
BseMII CTCAG 2 cut(s) 810, 897
BseNI ACTGG 4 cut(s) 205, 216, 657, 1258
BseRI GAGGAG 1 cut(s) 1535
BseXI GCAGC 1 cut(s) 861
BseYI CCCAGC 2 cut(s) 314, 529
BsgI GTGCAG 1 cut(s) 1011
BshFI GGCC 3 cut(s) 425, 482, 633
BshNI GGYRCC 1 cut(s) 431
BsiHKAI GWGCWC 2 cut(s) 185, 940
BsiHKCI CYCGRG 1 cut(s) 1016
BslFI GGGAC 1 cut(s) 958
BslI CCNNNNNNNGG 4 cut(s) 478, 521, 703, 1253
BsmAI GTCTC 4 cut(s) 243, 661, 815, 891
BsmFI GGGAC 1 cut(s) 958
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 3 cut(s) 425, 482, 633
Bso31I GGTCTC 1 cut(s) 891
BsoBI CYCGRG 1 cut(s) 1016
Bsp1286I GDGCHC 2 cut(s) 185, 940
Bsp143I GATC 2 cut(s) 468, 1012
Bsp1720I GCTNAGC 1 cut(s) 906
BspACI CCGC 3 cut(s) 583, 677, 697
BspANI GGCC 3 cut(s) 425, 482, 633
BspCNI CTCAG 2 cut(s) 811, 898
BspLI GGNNCC 3 cut(s) 433, 481, 567
BspMI ACCTGC 1 cut(s) 1363
BspPI GGATC 2 cut(s) 463, 1007
BspT107I GGYRCC 1 cut(s) 431
BspTI CTTAAG 2 cut(s) 1535, 1550
BspTNI GGTCTC 1 cut(s) 891
BsrDI GCAATG 2 cut(s) 1092, 1203
BsrI ACTGG 4 cut(s) 205, 216, 657, 1258
BssECI CCNNGG 3 cut(s) 229, 1017, 1324
BssMI GATC 2 cut(s) 468, 1012
BssNAI GTATAC 1 cut(s) 1151
BssT1I CCWWGG 1 cut(s) 229
Bst1107I GTATAC 1 cut(s) 1151
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 3 cut(s) 209, 882, 1264
Bst6I CTCTTC 2 cut(s) 96, 268
BstAFI CTTAAG 2 cut(s) 1535, 1550
BstDEI CTNAG 2 cut(s) 819, 906
BstDSI CCRYGG 1 cut(s) 1324
BstF5I GGATG 5 cut(s) 61, 526, 685, 1073, 1624
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 2 cut(s) 471, 1015
BstMAI GTCTC 4 cut(s) 243, 661, 815, 891
BstMBI GATC 2 cut(s) 468, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 431, 1369
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 702
BstSFI CTRYAG 1 cut(s) 878
BstV1I GCAGC 1 cut(s) 861
BstV2I GAAGAC 2 cut(s) 100, 728
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BstZ17I GTATAC 1 cut(s) 1151
BsuI GTATCC 1 cut(s) 1033
BsuRI GGCC 3 cut(s) 425, 482, 633
BtgI CCRYGG 1 cut(s) 1324
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 5 cut(s) 61, 526, 685, 1073, 1624
BtsIMutI CAGTG 1 cut(s) 887
BveI ACCTGC 1 cut(s) 1363
CaiI CAGNNNCTG 1 cut(s) 905
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 2 cut(s) 423, 480
Csp6I GTAC 7 cut(s) 153, 198, 660, 785, 1141, 1260, 1638
CviAII CATG 6 cut(s) 98, 377, 388, 562, 770, 941
CviQI GTAC 7 cut(s) 153, 198, 660, 785, 1141, 1260, 1638
DdeI CTNAG 2 cut(s) 819, 906
DpnI GATC 2 cut(s) 470, 1014
DpnII GATC 2 cut(s) 468, 1012
EaeI YGGCCR 1 cut(s) 631
Eam1104I CTCTTC 2 cut(s) 96, 268
EarI CTCTTC 2 cut(s) 96, 268
Ecl136II GAGCTC 2 cut(s) 183, 938
Eco130I CCWWGG 1 cut(s) 229
Eco24I GRGCYC 2 cut(s) 185, 940
Eco31I GGTCTC 1 cut(s) 891
Eco53kI GAGCTC 2 cut(s) 183, 938
Eco57I CTGAAG 3 cut(s) 189, 249, 591
Eco88I CYCGRG 1 cut(s) 1016
EcoICRI GAGCTC 2 cut(s) 183, 938
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 229
EcoT38I GRGCYC 2 cut(s) 185, 940
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 6 cut(s) 101, 380, 391, 565, 773, 944
FaqI GGGAC 1 cut(s) 958
FatI CATG 6 cut(s) 97, 376, 387, 561, 769, 940
FauNDI CATATG 1 cut(s) 1312
FblI GTMKAC 1 cut(s) 1150
Fnu4HI GCNGC 3 cut(s) 583, 697, 875
FokI GGATG 5 cut(s) 68, 533, 692, 1080, 1631
FriOI GRGCYC 2 cut(s) 185, 940
Fsp4HI GCNGC 3 cut(s) 583, 697, 875
FspBI CTAG 3 cut(s) 30, 80, 1059
GlaI GCGC 1 cut(s) 581
GluI GCNGC 3 cut(s) 583, 697, 875
GsaI CCCAGC 2 cut(s) 318, 533
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 3 cut(s) 425, 482, 633
HhaI GCGC 1 cut(s) 582
Hin1II CATG 6 cut(s) 101, 380, 391, 565, 773, 944
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HinfI GANTC 4 cut(s) 164, 721, 1348, 1444
Hpy166II GTNNAC 4 cut(s) 22, 382, 1126, 1151
Hpy188I TCNGA 4 cut(s) 169, 607, 1356, 1487
Hpy188III TCNNGA 4 cut(s) 545, 652, 1016, 1226
Hpy8I GTNNAC 4 cut(s) 22, 382, 1126, 1151
HpyAV CCTTC 1 cut(s) 1549
HpyCH4III ACNGT 3 cut(s) 209, 882, 1264
HpyCH4IV ACGT 3 cut(s) 15, 151, 1569
HpyCH4V TGCA 3 cut(s) 458, 838, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 1369
HpyF3I CTNAG 2 cut(s) 819, 906
HpySE526I ACGT 3 cut(s) 15, 151, 1569
Hsp92II CATG 6 cut(s) 101, 380, 391, 565, 773, 944
HspAI GCGC 1 cut(s) 580
Kzo9I GATC 2 cut(s) 468, 1012
LmnI GCTCC 4 cut(s) 76, 180, 935, 1312
Lsp1109I GCAGC 1 cut(s) 861
LweI GCATC 5 cut(s) 267, 278, 342, 1204, 1294
MaeI CTAG 3 cut(s) 30, 80, 1059
MaeII ACGT 3 cut(s) 15, 151, 1569
MaeIII GTNAC 2 cut(s) 203, 1319
MalI GATC 2 cut(s) 470, 1014
MboI GATC 2 cut(s) 468, 1012
MboII GAAGA 8 cut(s) 105, 113, 139, 182, 255, 386, 728, 1640
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 2 cut(s) 185, 940
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 7 cut(s) 134, 302, 540, 803, 920, 1220, 1601
MluNI TGGCCA 1 cut(s) 633
MlyI GAGTC 2 cut(s) 715, 1453
MmeI TCCRAC 1 cut(s) 70
Mox20I TGGCCA 1 cut(s) 633
MscI TGGCCA 1 cut(s) 633
MseI TTAA 7 cut(s) 69, 194, 539, 924, 1053, 1536, 1551
MslI CAYNNNNRTG 2 cut(s) 402, 418
Msp20I TGGCCA 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 585
MspCI CTTAAG 2 cut(s) 1535, 1550
MspR9I CCNGG 1 cut(s) 704
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 1 cut(s) 704
MwoI GCNNNNNNNGC 2 cut(s) 431, 1369
NdeI CATATG 1 cut(s) 1312
NdeII GATC 2 cut(s) 468, 1012
NlaIII CATG 6 cut(s) 101, 380, 391, 565, 773, 944
NlaIV GGNNCC 3 cut(s) 433, 481, 567
NmeAIII GCCGAG 1 cut(s) 1467
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 380
PciI ACATGT 1 cut(s) 376
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 164, 1348
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 3 cut(s) 584, 698, 876
PleI GAGTC 2 cut(s) 715, 1452
PpsI GAGTC 2 cut(s) 715, 1452
PscI ACATGT 1 cut(s) 376
PsiI TTATAA 1 cut(s) 963
Psp124BI GAGCTC 2 cut(s) 185, 940
Psp6I CCWGG 1 cut(s) 702
PspFI CCCAGC 2 cut(s) 314, 529
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 3 cut(s) 433, 481, 567
PspPI GGNCC 2 cut(s) 423, 480
PstNI CAGNNNCTG 1 cut(s) 905
PsuI RGATCY 1 cut(s) 468
RsaI GTAC 7 cut(s) 154, 199, 661, 786, 1142, 1261, 1639
RsaNI GTAC 7 cut(s) 153, 198, 660, 785, 1141, 1260, 1638
RseI CAYNNNNRTG 2 cut(s) 402, 418
SacI GAGCTC 2 cut(s) 185, 940
SaqAI TTAA 7 cut(s) 69, 194, 539, 924, 1053, 1536, 1551
SatI GCNGC 3 cut(s) 583, 697, 875
Sau3AI GATC 2 cut(s) 468, 1012
Sau96I GGNCC 2 cut(s) 423, 480
ScaI AGTACT 2 cut(s) 199, 661
SchI GAGTC 2 cut(s) 715, 1453
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 2 cut(s) 185, 940
SfaNI GCATC 5 cut(s) 267, 278, 342, 1204, 1294
SfcI CTRYAG 1 cut(s) 878
SmiMI CAYNNNNRTG 2 cut(s) 402, 418
SmlI CTYRAG 2 cut(s) 1535, 1550
SmoI CTYRAG 2 cut(s) 1535, 1550
Sse9I AATT 7 cut(s) 134, 302, 540, 803, 920, 1220, 1601
SsiI CCGC 3 cut(s) 583, 677, 697
SspMI CTAG 3 cut(s) 30, 80, 1059
SstI GAGCTC 2 cut(s) 185, 940
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 3 cut(s) 209, 882, 1264
TaiI ACGT 3 cut(s) 18, 154, 1572
TaqI TCGA 3 cut(s) 401, 617, 1005
TasI AATT 7 cut(s) 134, 302, 540, 803, 920, 1220, 1601
TatI WGTACW 3 cut(s) 197, 659, 1140
TauI GCSGC 2 cut(s) 585, 699
TfiI GAWTC 2 cut(s) 164, 1348
Tru1I TTAA 7 cut(s) 69, 194, 539, 924, 1053, 1536, 1551
Tru9I TTAA 7 cut(s) 69, 194, 539, 924, 1053, 1536, 1551
TscAI CASTG 1 cut(s) 887
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 874
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 5 cut(s) 54, 114, 1098, 1577, 1593
TspGWI ACGGA 1 cut(s) 1109
TspRI CASTG 1 cut(s) 887
Van91I CCANNNNNTGG 1 cut(s) 521
Vha464I CTTAAG 2 cut(s) 1535, 1550
XapI RAATTY 3 cut(s) 134, 803, 1220
XceI RCATGY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 1150
XspI CTAG 3 cut(s) 30, 80, 1059
ZrmI AGTACT 2 cut(s) 199, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.