Rh1BG196200

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002773
Physical Location & Seq
Forward (+)
31304206 .. 31309388
5183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG196200.1

Sequence Viewer

Length: 1032 bp
ATGATTTATAACTTATGGTTCAACGATGATGGGAGTGCAGAGCTGGACTGCGATACTGATCCCGAGGATATTCGTATTAGTGGGGATACCAAAAAAGTTAATGCTAAACTTGGATGGAAAGAAGTCAATGAACAGCACATTGCTAATCGTTTCCATCACTCTCTCCGTGTTTATTTGTCTATCTTGTACTTGCGTATACCAGCAACCTTTCAAATAATACTGCGTGGGAGAGTTGTTGAGCATCATAACATTGCTGATGACCTAAAATTTCAAGAATATATCTTGGTCAAGTTGACTACTATTGGATTTCTAAATGATGCTCCATATGTCAGTTACCACGGCTTCAATGTTTATCACAAGAATCGTCTGATACTGGTTGTGAGCTATTTAGACAGCAGGGGTCGTGGAGTTGTTGGTGTTTTGGAAGCAGATTTTGTTGAGCCGAGTCATAACAAACAAGATTTTGAGAGAACTTCTCTTTTTCAGAAACTTGAAGTCCGTTTGAAGGAGATGACGTGGGAATACTGGGATTATCACTGTGGACTAATTGGGTATCAGGTAAAGAAAAAGCTTAAACCGGTGACCCCACAAAGTGGCGTTCATCAATCTATCACATTGGGCCAAAGTTCCCCTGCTCTTGGTAGTAAAAACACAGTACTTGGAAAATCTGGGCCATCAATTTCAAGCACCTTAAGGAAATCTGTACAAGGAACGATGAAGAGGAAAGAACATGATGATATTCTGCCGGTTGAAACTGTGAAAGGGGCCAAGGTGATCAATACTGGGAAAAGTCAGTCTGTACAGCTGGGGAATCCTACTGGAAATCAGCTGAAAGATCAAGAGGCTATAAATCTGATGCAAGAGAACAACAAGCTGCGATCTAAATGCTTGGAATATGCGAAGAGGGAGGAGGAACTAAATCTTAAGGTGGCACAGCTTAAGAAGGAAATGAAAGACGTTGATGATGAATACTCTCTAATGTTGGCTGAATTGGAAGCGTTGGGGGATGTCAAGGAAGAAAAGGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

343

Amino Acids

39.05

Weight (kDa)

7.18

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Morc6_S5 PF17942 53 - 176 3.4e-45 Morc6 ribosomal protein S5 domain 2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AccB7I CCANNNNNTGG 1 cut(s) 593
AccI GTMKAC 1 cut(s) 196
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 5 cut(s) 188, 657, 705, 801, 1027
AfiI CCNNNNNNNGG 3 cut(s) 505, 593, 638
AflII CTTAAG 3 cut(s) 691, 923, 938
AgeI ACCGGT 1 cut(s) 577
AgsI TTSAA 8 cut(s) 22, 212, 272, 346, 494, 505, 684, 752
AjiI CACGTC 1 cut(s) 516
AluBI AGCT 7 cut(s) 43, 384, 571, 805, 829, 874, 937
AluI AGCT 7 cut(s) 43, 384, 571, 805, 829, 874, 937
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 3 cut(s) 619, 671, 765
ApeKI GCWGC 1 cut(s) 874
ApoI RAATTY 1 cut(s) 266
AsiGI ACCGGT 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 619, 671, 765
AsuHPI GGTGA 2 cut(s) 592, 784
AvaI CYCGRG 1 cut(s) 62
BbvI GCAGC 1 cut(s) 861
BccI CCATC 4 cut(s) 23, 108, 162, 682
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 867, 901
BciVI GTATCC 1 cut(s) 79
BclI TGATCA 1 cut(s) 774
BfrI CTTAAG 3 cut(s) 691, 923, 938
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 1 cut(s) 875
BlsI GCNGC 1 cut(s) 876
BmcAI AGTACT 1 cut(s) 657
BmeT110I CYCGRG 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 516
BmgT120I GGNCC 3 cut(s) 619, 671, 765
BmiI GGNNCC 1 cut(s) 766
BmrI ACTGGG 2 cut(s) 535, 792
BmsI GCATC 3 cut(s) 250, 307, 846
BmuI ACTGGG 2 cut(s) 535, 792
BplI GAGNNNNNCTC 2 cut(s) 460, 492
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 63, 337, 768
BsaWI WCCGGW 1 cut(s) 577
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 3 cut(s) 505, 593, 638
Bse118I RCCGGY 2 cut(s) 577, 745
Bse1I ACTGG 4 cut(s) 378, 530, 787, 823
Bse3DI GCAATG 2 cut(s) 138, 249
Bse8I GATNNNNATC 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 63, 337, 768
BseGI GGATG 2 cut(s) 119, 1012
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 3 cut(s) 505, 593, 638
BseMI GCAATG 2 cut(s) 138, 249
BseNI ACTGG 4 cut(s) 378, 530, 787, 823
BseRI GAGGAG 1 cut(s) 923
BseXI GCAGC 1 cut(s) 861
BseYI CCCAGC 1 cut(s) 805
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 3 cut(s) 621, 673, 767
BshTI ACCGGT 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 578, 746
BslI CCNNNNNNNGG 3 cut(s) 505, 593, 638
BsnI GGCC 3 cut(s) 621, 673, 767
BsoBI CYCGRG 1 cut(s) 62
Bsp1407I TGTACA 2 cut(s) 703, 799
Bsp143I GATC 4 cut(s) 58, 774, 835, 878
BspANI GGCC 3 cut(s) 621, 673, 767
BspLI GGNNCC 1 cut(s) 766
BspPI GGATC 1 cut(s) 53
BspTI CTTAAG 3 cut(s) 691, 923, 938
BsrDI GCAATG 2 cut(s) 138, 249
BsrFI RCCGGY 2 cut(s) 577, 745
BsrGI TGTACA 2 cut(s) 703, 799
BsrI ACTGG 4 cut(s) 378, 530, 787, 823
BssAI RCCGGY 2 cut(s) 577, 745
BssECI CCNNGG 3 cut(s) 63, 337, 768
BssMI GATC 4 cut(s) 58, 774, 835, 878
BssNAI GTATAC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 768
Bst1107I GTATAC 1 cut(s) 197
Bst4CI ACNGT 3 cut(s) 539, 655, 757
Bst6I CTCTTC 2 cut(s) 713, 896
BstAFI CTTAAG 3 cut(s) 691, 923, 938
BstAUI TGTACA 2 cut(s) 703, 799
BstDSI CCRYGG 1 cut(s) 337
BstEII GGTNACC 1 cut(s) 580
BstF5I GGATG 2 cut(s) 119, 1012
BstKTI GATC 4 cut(s) 61, 777, 838, 881
BstMBI GATC 4 cut(s) 58, 774, 835, 878
BstPI GGTNACC 1 cut(s) 580
BstV1I GCAGC 1 cut(s) 861
BstZ17I GTATAC 1 cut(s) 197
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 3 cut(s) 621, 673, 767
BtgI CCRYGG 1 cut(s) 337
BtrI CACGTC 1 cut(s) 516
BtsCI GGATG 2 cut(s) 119, 1012
BtsIMutI CAGTG 1 cut(s) 535
Cfr10I RCCGGY 2 cut(s) 577, 745
Cfr13I GGNCC 3 cut(s) 619, 671, 765
Csp6I GTAC 5 cut(s) 187, 656, 704, 800, 1026
CspAI ACCGGT 1 cut(s) 577
CviAII CATG 1 cut(s) 731
CviQI GTAC 5 cut(s) 187, 656, 704, 800, 1026
DpnI GATC 4 cut(s) 60, 776, 837, 880
DpnII GATC 4 cut(s) 58, 774, 835, 878
DraIII CACNNNGTG 1 cut(s) 593
Eam1104I CTCTTC 2 cut(s) 713, 896
EarI CTCTTC 2 cut(s) 713, 896
Eco130I CCWWGG 1 cut(s) 768
Eco88I CYCGRG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 580
EcoO65I GGTNACC 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 768
ErhI CCWWGG 1 cut(s) 768
FaeI CATG 1 cut(s) 734
FatI CATG 1 cut(s) 730
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 774
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 875
FokI GGATG 2 cut(s) 126, 1019
Fsp4HI GCNGC 1 cut(s) 875
GluI GCNGC 1 cut(s) 875
GsaI CCCAGC 1 cut(s) 809
HaeIII GGCC 3 cut(s) 621, 673, 767
HapII CCGG 2 cut(s) 578, 746
Hin1II CATG 1 cut(s) 734
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 3 cut(s) 361, 445, 811
HpaII CCGG 2 cut(s) 578, 746
HphI GGTGA 2 cut(s) 592, 784
Hpy166II GTNNAC 3 cut(s) 197, 294, 542
Hpy188I TCNGA 3 cut(s) 369, 486, 855
Hpy188III TCNNGA 3 cut(s) 62, 272, 839
Hpy8I GTNNAC 3 cut(s) 197, 294, 542
HpyAV CCTTC 2 cut(s) 499, 937
HpyCH4III ACNGT 3 cut(s) 539, 655, 757
HpyCH4IV ACGT 2 cut(s) 515, 957
HpyCH4V TGCA 2 cut(s) 38, 859
HpySE526I ACGT 2 cut(s) 515, 957
Hsp92II CATG 1 cut(s) 734
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 4 cut(s) 58, 774, 835, 878
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 1 cut(s) 861
LweI GCATC 3 cut(s) 250, 307, 846
MaeII ACGT 2 cut(s) 515, 957
MaeIII GTNAC 2 cut(s) 332, 580
MalI GATC 4 cut(s) 60, 776, 837, 880
MboI GATC 4 cut(s) 58, 774, 835, 878
MboII GAAGA 3 cut(s) 730, 913, 1028
MluCI AATT 4 cut(s) 266, 546, 678, 989
MlyI GAGTC 1 cut(s) 454
MnlI CCTC 6 cut(s) 58, 714, 835, 897, 901, 904
MseI TTAA 5 cut(s) 99, 573, 692, 924, 939
MspA1I CMGCKG 2 cut(s) 805, 829
MspCI CTTAAG 3 cut(s) 691, 923, 938
MspI CCGG 2 cut(s) 578, 746
NdeI CATATG 1 cut(s) 325
NdeII GATC 4 cut(s) 58, 774, 835, 878
NlaIII CATG 1 cut(s) 734
NlaIV GGNNCC 1 cut(s) 766
NmeAIII GCCGAG 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 580
PfeI GAWTC 2 cut(s) 361, 811
PflMI CCANNNNNTGG 1 cut(s) 593
PinAI ACCGGT 1 cut(s) 577
PkrI GCNGC 1 cut(s) 876
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
PsiI TTATAA 1 cut(s) 9
PspEI GGTNACC 1 cut(s) 580
PspFI CCCAGC 1 cut(s) 805
PspN4I GGNNCC 1 cut(s) 766
PspPI GGNCC 3 cut(s) 619, 671, 765
PvuII CAGCTG 2 cut(s) 805, 829
RsaI GTAC 5 cut(s) 188, 657, 705, 801, 1027
RsaNI GTAC 5 cut(s) 187, 656, 704, 800, 1026
SaqAI TTAA 5 cut(s) 99, 573, 692, 924, 939
SatI GCNGC 1 cut(s) 875
Sau3AI GATC 4 cut(s) 58, 774, 835, 878
Sau96I GGNCC 3 cut(s) 619, 671, 765
ScaI AGTACT 1 cut(s) 657
SchI GAGTC 1 cut(s) 454
SfaNI GCATC 3 cut(s) 250, 307, 846
SmlI CTYRAG 3 cut(s) 691, 923, 938
SmoI CTYRAG 3 cut(s) 691, 923, 938
Sse9I AATT 4 cut(s) 266, 546, 678, 989
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 3 cut(s) 539, 655, 757
TaiI ACGT 2 cut(s) 518, 960
TasI AATT 4 cut(s) 266, 546, 678, 989
TatI WGTACW 4 cut(s) 186, 655, 703, 799
TfiI GAWTC 2 cut(s) 361, 811
Tru1I TTAA 5 cut(s) 99, 573, 692, 924, 939
Tru9I TTAA 5 cut(s) 99, 573, 692, 924, 939
TscAI CASTG 1 cut(s) 542
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 1 cut(s) 874
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 5 cut(s) 144, 590, 731, 965, 981
TspGWI ACGGA 2 cut(s) 155, 488
TspRI CASTG 1 cut(s) 542
Van91I CCANNNNNTGG 1 cut(s) 593
Vha464I CTTAAG 3 cut(s) 691, 923, 938
XapI RAATTY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 196
ZrmI AGTACT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.