Rmu_co8440237.1_g000001

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8440237.1
OG0002773
Physical Location & Seq
Forward (+)
1 .. 1458
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8440237.1_g000001.1.cds

Sequence Viewer

Length: 525 bp
ccgtattggcaggttgtgagctatttagacagcaggggtcgtggagttgttggtgttttggaagcagattttgttgagccgagtcataacaaacaagattttgagagaacttctctttttcagaaacttgaagtccgtttgaaggagatgacgtgggaatactgggattatcactgtggactaattgggtatcaggtaaagaaaaagcttaaaccagtgaccccacaaagtggcgttcatcaatctatcacattgggccaaagttcccctgctcttggtagtaaaaacacagtacttggaaaatctgggccatcaatttcaagcaccttaaggaaatctgtacaaggaacgatgaagaggaaagaacgtgatgatattctgccggttgaaaatgtgaaaggggccaagctgatcaatactgggaaaagtcagtctgtacagctggggaatcctactggaaatcagctgaaagatcaagaggccaaaaatctgatgcaagagaacaacaagctgcgatctaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

174

Amino Acids

19.5

Weight (kDa)

9.71

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 230
AfaI GTAC 3 cut(s) 294, 342, 438
AfiI CCNNNNNNNGG 3 cut(s) 142, 230, 275
AflII CTTAAG 1 cut(s) 328
AgsI TTSAA 4 cut(s) 131, 142, 321, 389
AjiI CACGTC 1 cut(s) 153
AluBI AGCT 6 cut(s) 21, 208, 409, 442, 466, 511
AluI AGCT 6 cut(s) 21, 208, 409, 442, 466, 511
AoxI GGCC 4 cut(s) 256, 308, 402, 480
ApeKI GCWGC 1 cut(s) 511
AspS9I GGNCC 3 cut(s) 256, 308, 402
BbvI GCAGC 1 cut(s) 498
BccI CCATC 1 cut(s) 319
BclI TGATCA 1 cut(s) 411
BfrI CTTAAG 1 cut(s) 328
BisI GCNGC 1 cut(s) 512
BlsI GCNGC 1 cut(s) 513
BmcAI AGTACT 1 cut(s) 294
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 256, 308, 402
BmiI GGNNCC 1 cut(s) 403
BmrI ACTGGG 2 cut(s) 172, 429
BmsI GCATC 1 cut(s) 483
BmuI ACTGGG 2 cut(s) 172, 429
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 230, 275
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 4 cut(s) 167, 215, 424, 460
BseLI CCNNNNNNNGG 3 cut(s) 142, 230, 275
BseNI ACTGG 4 cut(s) 167, 215, 424, 460
BseXI GCAGC 1 cut(s) 498
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 4 cut(s) 258, 310, 404, 482
BsiSI CCGG 1 cut(s) 383
BslI CCNNNNNNNGG 3 cut(s) 142, 230, 275
BsnI GGCC 4 cut(s) 258, 310, 404, 482
Bsp1407I TGTACA 2 cut(s) 340, 436
Bsp143I GATC 3 cut(s) 411, 472, 515
BspANI GGCC 4 cut(s) 258, 310, 404, 482
BspLI GGNNCC 1 cut(s) 403
BspTI CTTAAG 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 382
BsrGI TGTACA 2 cut(s) 340, 436
BsrI ACTGG 4 cut(s) 167, 215, 424, 460
BssAI RCCGGY 1 cut(s) 382
BssMI GATC 3 cut(s) 411, 472, 515
Bst4CI ACNGT 2 cut(s) 176, 292
Bst6I CTCTTC 1 cut(s) 350
BstAFI CTTAAG 1 cut(s) 328
BstAUI TGTACA 2 cut(s) 340, 436
BstDEI CTNAG 1 cut(s) 519
BstKTI GATC 3 cut(s) 414, 475, 518
BstMBI GATC 3 cut(s) 411, 472, 515
BstV1I GCAGC 1 cut(s) 498
BsuRI GGCC 4 cut(s) 258, 310, 404, 482
BtrI CACGTC 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 172, 222
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 3 cut(s) 256, 308, 402
Csp6I GTAC 3 cut(s) 293, 341, 437
CviQI GTAC 3 cut(s) 293, 341, 437
DdeI CTNAG 1 cut(s) 519
DpnI GATC 3 cut(s) 413, 474, 517
DpnII GATC 3 cut(s) 411, 472, 515
DraIII CACNNNGTG 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
FaiI YATR 1 cut(s) 87
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 512
Fsp4HI GCNGC 1 cut(s) 512
GluI GCNGC 1 cut(s) 512
GsaI CCCAGC 1 cut(s) 446
HaeIII GGCC 4 cut(s) 258, 310, 404, 482
HapII CCGG 1 cut(s) 383
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 82, 448
HpaII CCGG 1 cut(s) 383
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 123, 492
Hpy188III TCNNGA 1 cut(s) 476
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 176, 292
HpyCH4IV ACGT 2 cut(s) 152, 367
HpyCH4V TGCA 1 cut(s) 496
HpyF3I CTNAG 1 cut(s) 519
HpySE526I ACGT 2 cut(s) 152, 367
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 3 cut(s) 411, 472, 515
Lsp1109I GCAGC 1 cut(s) 498
LweI GCATC 1 cut(s) 483
MaeII ACGT 2 cut(s) 152, 367
MaeIII GTNAC 1 cut(s) 217
MalI GATC 3 cut(s) 413, 474, 517
MboI GATC 3 cut(s) 411, 472, 515
MboII GAAGA 1 cut(s) 367
MluCI AATT 2 cut(s) 183, 315
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 2 cut(s) 351, 472
MseI TTAA 2 cut(s) 210, 329
MspA1I CMGCKG 2 cut(s) 442, 466
MspCI CTTAAG 1 cut(s) 328
MspI CCGG 1 cut(s) 383
NdeII GATC 3 cut(s) 411, 472, 515
NlaIV GGNNCC 1 cut(s) 403
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 448
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 1 cut(s) 513
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 3 cut(s) 256, 308, 402
PvuII CAGCTG 2 cut(s) 442, 466
RsaI GTAC 3 cut(s) 294, 342, 438
RsaNI GTAC 3 cut(s) 293, 341, 437
SaqAI TTAA 2 cut(s) 210, 329
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 3 cut(s) 411, 472, 515
Sau96I GGNCC 3 cut(s) 256, 308, 402
ScaI AGTACT 1 cut(s) 294
SchI GAGTC 1 cut(s) 91
SfaNI GCATC 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 2 cut(s) 183, 315
TaaI ACNGT 2 cut(s) 176, 292
TaiI ACGT 2 cut(s) 155, 370
TasI AATT 2 cut(s) 183, 315
TatI WGTACW 3 cut(s) 292, 340, 436
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 2 cut(s) 210, 329
Tru9I TTAA 2 cut(s) 210, 329
TscAI CASTG 2 cut(s) 179, 222
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 227, 368
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 2 cut(s) 179, 222
Van91I CCANNNNNTGG 1 cut(s) 230
Vha464I CTTAAG 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.