Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002773

Physical Location & Seq

Genomic Coordinates Forward (+)

30342929 .. 30343306

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0212800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACAGCGAAGGAGGTGAAGTTCTCAGAGGCGATGAGCTCAATGCCGCGACAGTGGCGACGCTTCTCCTTCTCGATCAAGTCGTGGATCTATGGGTCCATGGTCTCCAGGTTGGTGTTCCCCCAAGCGTTTACTGCCTCCATTGGAGAGAATGAGAGGAGAGAATGGGGAGAGATGAAGAAGAAGAAAAATGGTTGTGGATTTACAGGCAAAGCTGGGAAACTGAATTTTGGGACCGAAAAGCCCGAGGACCGAGCCAACTCATTTGGGATCGGTTTTTGTCGGTTTTCATTTTTGAAAAAGCCCGAACCCATTGTTTCGGGCTCGGTCTCGGTTTTACCAAATTTCGGGCCCAACCCGACCCGAGCCCAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

125

Amino Acids

14.05

Weight (kDa)

10.2

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19100
fragaria_vesca	FvH4_5g28960 FvH4_5g28960 FvH4_5g28960 FvH4_5g28960
malus_domestica	MD07G1122300.v1.1
prunus_persica	Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1
pyrus_communis	pycom07g11070
rosa_chinensis	RchiOBHm_Chr1g0350621 RchiOBHm_Chr5g0042471
rosa_laevigata	RLG00000028467 RLG00000034131
rosa_multiflora	Rmu_co8440237.1_g000001 Rmu_sc0017081.1_g000007 Rmu_ssc0000343.1_g000032
rosa_roxburghii	Rroxscaffold_1G00038160 Rroxscaffold_4G00304660
rosa_rugosa	Rorug01G0212800 Rorug01G0212900 Rorug05G0200600 Rorug05G0200700.1 Rorug05G0200800 Rorug05G0200900
rosa_samantha	Rh1BG195900 Rh1BG196200 Rh1DG223900 Rh1DG224200 Rh5AG286700 Rh5BG291300 Rh5CG323400 Rh5DG301000
rosa_wichuraiana	Rw1G019660 Rw5G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	49
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	95, 278
AcsI	RAATTY	2 cut(s)	226, 343
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	107
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	2 cut(s)	39, 215
AluI	AGCT	2 cut(s)	39, 215
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	2 cut(s)	109, 334
AlwI	GGATC	2 cut(s)	95, 278
Ama87I	CYCGRG	2 cut(s)	245, 363
AoxI	GGCC	1 cut(s)	350
ApaI	GGGCCC	1 cut(s)	354
ApoI	RAATTY	2 cut(s)	226, 343
AspS9I	GGNCC	5 cut(s)	96, 234, 250, 350, 351
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	2 cut(s)	245, 363
AvaII	GGWCC	3 cut(s)	96, 234, 250
BaeGI	GKGCMC	1 cut(s)	354
BanII	GRGCYC	4 cut(s)	41, 326, 354, 370
Bbv12I	GWGCWC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	109, 334
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	3 cut(s)	96, 234, 250
BmeT110I	CYCGRG	2 cut(s)	245, 363
BmgT120I	GGNCC	5 cut(s)	96, 234, 250, 350, 351
BmiI	GGNNCC	3 cut(s)	97, 235, 352
BmrFI	CCNGG	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	91
BsaI	GGTCTC	2 cut(s)	109, 334
BsaJI	CCNNGG	2 cut(s)	99, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	99, 246
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	354
BseYI	CCCAGC	2 cut(s)	215, 369
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	41
BsiHKCI	CYCGRG	2 cut(s)	245, 363
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	2 cut(s)	109, 334
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	352
Bso31I	GGTCTC	2 cut(s)	109, 334
BsoBI	CYCGRG	2 cut(s)	245, 363
Bsp120I	GGGCCC	1 cut(s)	350
Bsp1286I	GDGCHC	4 cut(s)	41, 326, 354, 370
Bsp143I	GATC	3 cut(s)	75, 87, 270
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	97, 235, 352
BspPI	GGATC	2 cut(s)	95, 278
BspTNI	GGTCTC	2 cut(s)	109, 334
BssECI	CCNNGG	2 cut(s)	99, 246
BssMI	GATC	3 cut(s)	75, 87, 270
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	25
BstDSI	CCRYGG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	49
BstKTI	GATC	3 cut(s)	78, 90, 273
BstMAI	GTCTC	2 cut(s)	109, 334
BstMBI	GATC	3 cut(s)	75, 87, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 134
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	354
BstUI	CGCG	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	59
Cfr13I	GGNCC	5 cut(s)	96, 234, 250, 350, 351
CseI	GACGC	1 cut(s)	69
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	9 cut(s)	39, 215, 244, 257, 304, 324, 352, 368, 373
CviKI_1	RGCY	9 cut(s)	39, 215, 244, 257, 304, 324, 352, 368, 373
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	3 cut(s)	77, 89, 272
DpnII	GATC	3 cut(s)	75, 87, 270
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	4 cut(s)	41, 326, 354, 370
Eco31I	GGTCTC	2 cut(s)	109, 334
Eco47I	GGWCC	3 cut(s)	96, 234, 250
Eco53kI	GAGCTC	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	245, 363
EcoICRI	GAGCTC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	4 cut(s)	41, 326, 354, 370
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	103
FaiI	YATR	2 cut(s)	93, 101
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	47
FriOI	GRGCYC	4 cut(s)	41, 326, 354, 370
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
GsaI	CCCAGC	2 cut(s)	219, 373
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	352
HgaI	GACGC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	4, 79
HpyCH4III	ACNGT	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 134
HpyF3I	CTNAG	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	75, 87, 270
LpnPI	CCDG	4 cut(s)	94, 121, 192, 201
MalI	GATC	3 cut(s)	77, 89, 272
MboI	GATC	3 cut(s)	75, 87, 270
MboII	GAAGA	3 cut(s)	190, 193, 196
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	4 cut(s)	41, 326, 354, 370
MluCI	AATT	2 cut(s)	226, 343
MnlI	CCTC	5 cut(s)	7, 22, 148, 150, 241
MspR9I	CCNGG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	55, 134
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	75, 87, 270
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	97, 235, 352
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	107
PspFI	CCCAGC	2 cut(s)	215, 369
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	97, 235, 352
PspOMI	GGGCCC	1 cut(s)	350
PspPI	GGNCC	5 cut(s)	96, 234, 250, 350, 351
PsuI	RGATCY	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	41
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	75, 87, 270
Sau96I	GGNCC	5 cut(s)	96, 234, 250, 350, 351
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	4 cut(s)	41, 326, 354, 370
SetI	ASST	4 cut(s)	18, 41, 113, 217
SinI	GGWCC	3 cut(s)	96, 234, 250
Sse9I	AATT	2 cut(s)	226, 343
SsiI	CCGC	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	74
TaqII	GACCGA	3 cut(s)	251, 267, 316
TasI	AATT	2 cut(s)	226, 343
TauI	GCSGC	1 cut(s)	49
TscAI	CASTG	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	191, 279
TspRI	CASTG	1 cut(s)	59
VpaK11BI	GGWCC	3 cut(s)	96, 234, 250
XapI	RAATTY	2 cut(s)	226, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.