Rorug05G0200900

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002773
Physical Location & Seq
Forward (+)
19922283 .. 19926002
3720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0200900.1

Sequence Viewer

Length: 3720 bp
ATGGTTGGGATGCAAGAGATGTTACAATTTTGTGAGTTAGAGGAGATGAAGTTTTTGGGCCCAAAATTTACATGGACGGGAATTAGAGGGGGTCAGGAGATTAAAATCCGGTTGGATAAGTTTGTGGGTACTGTTAGCTGGAAGAATCTATTTGTGGTTTCTTCTGTTCGTCATCTTAATCCCACTACGTCAGATCACTTGCCTATCCTCTTAGAGGTCAGAGAGAAAAGGAAGCGGAAAAAGAGGAGAAAAAAAAGGTTCAAATTTGAAGAGTTTTGGCTTAGGGAAGAGTCCTGTAGAGAAGTTGTTACGCAAGGATGGATTAATGCAGCTGGACCTGATCCTTTCCTCAACATTTGGAACAAAATAAAGAACACAAGAAGGGAACTTGAAACCTGGAGCGTCGAGTTACTTGGGAAGGTTAAGCAAGAAATTGAGAAGATAAGAGCTCAGCTTGCCATATTTTACGATTCCTCTTTAGCTGTGGCGGGGGATGTGGATAGGTCAACATTGGAGGCTAGACTGAACGAGTTGTTACGGCTAGAGCATGACTTCTGGAAACAGCGTGCAAAAGTCTTTTGGTTGTCTGATGGTGATCTAAATACAAGTTTTTTCCATCAAAGGGTCCGTAACAGAAGGAAGAAGAACTGGATTTTAGGTCTATATAATGATGAAGGTGTTTGGTGTATGGATGACAATGATTTGGAAAATATTGTCCTTTCTTACTTTCGTGATTTGTTCTCTTCTTCACTCCCGGAGAATTTCCAGAATGTTATAGAAGCCCTTCCTCAAGTCATTTCTGATGCTGACAACAGTGAGTTGACGAAGGAGCTTGGAGAGGGGGAGATTTATGTAGCGATTAAGTGTATGCATCCCTATAAGTCCCCCGGTCCGGATGTTTTTTCCCCATGCTTTTATCAAATCTTCTGGGATTTGGTTGGTGTGGATGTCATAGCAGCTGTTCGAAGTCTTATCGGCTCGGAGGAGCGACTCAAGGTTATTAATAATACTGTTGTGTCCTTGATTCCGAAAGTCAAAACACCACAGCAGATGGGTGATCTGCGGCCAATTAGTTTATGCAATGTTCTGTACAAGATTGGGTCAAAAGTGCTTGCAAACCGGTTGAAACCTTTTTTGGATGGGATGATTTCCCCATTTCAGAGTGCTTTCGTCCCTGGGAGGTTGATATCAGATAACTCTCTGGTTGCTTTTGAAATTTCACACTGCTTGAAAAGACGAAGAAGTGGTAAGATAGGCTATGGTGCATTGAAGCTTGATATGAGTAAGGCTTATGACAGGGTAGAGTGGGGCTTTCTAGAAGCGGTTATGATAAGGATGGGCTTCTGCATGGAATGGGTTAGGTGGATTATGGGTTGTGTGCGTACAGTATCCTACTCATTCATTGTCAATGGGGTGCCAAGGGGTAGAGTGGTTCCGACTAGAGGGTTGAGACAAGGTGATGCTATCTCACCATATTTGTTTTTATTGTGTGCTGAGGCCCTGTCACGATTGATACAACATGCTGAAGGGGCTGGTAGGCTGCATGGTATTAAGATATGTCTTGGTGCTCCTAGTGTGAGTCATTTATTCTTTGCTGATGACTCATTCATTTTCTTCCAAGCAACAAAGGAGGATTGTACTTCGTTGAAAGGTATCTTGCAGGATTATGAAAGTGCTTCTGGGCAACAAGTTAATTATCAAAAGAGCTGTGTTGCTTTCAGTAAAAACGTTGAGATTGAGTTCCAAGAGGAGCTAGCAGAAACTCTGGGGGTTAATAGAGTTGAAAAGCATGACAAGTATCTTGGTTTACCAACTGAGATTAGCTATTCAAAGGTGGAGGTTTTCGCGTTTCTAAATGAAAAGGTACGTGCTAGAACTCAAGGATGGAGAGAGACGACTCTTAGCGTTGCCGGGAAAGAGGTGTTAATTAAAGCAGTAGCCCAAGCTATCCCTTCTTATGTCATGGGGTGTTTTGAGATTCCGAAGCATTTATGTCAAGTGATGCACCAACTAATGGCGAGGTTTTGGTGGGGTGATGTGGAGAATGGAAGGAAGATCCACTGGTTATCTTGGGAGAAGATGTGTAGCCCAAAGAGTGAAGGTAGAATGGGCTTTCGAAACATGCATGCTTTCAACTTAGCGTTGCTAGCCAAGCAAGGTTGGCGGTTAATTCAAAAGCCGGATTCCTTAATTGCCTGTCTCCTGAAAGCTAAGTATTTTCCGAGTAGTTCTTTTGTGGAGGCTAATCTCAAAAGTGGTGCATCTTATACTTGGAGAAGTATCATTGCGGGCAGAGCTGTGTTACAGAAAGGCTTACGCTACCAAGTTGGCGATGGGAGGAATATTTCTTTGTGGAGAGATCCGTGGTTGCCAGTCCCGCATTTGTTTAGGCCTTTCTCACCCATCATGGAAGGGACGGAGGAATGGCTAGTGGCAGATATAATTGATGAGAACAACAAAGAGTGGTTGTTGGAGGTGGTAAACGAACTTTTTTCGGAGGAAGAAGTCAGAAGGATTGCTTCAACCCCTTTGAGTCTGAGGCCAGCTGAAGATAGACTAGTGTGGCACTTTGACAACAAAGGGCTATATAATGTGAAAAGTGGCTACTATGTGTACCAAAATTCAGTCAATATGTTAGATAAAGCTTCGACTTCCGCTGCTGGTGAGGGAGGGAGGATGCGCAAGGTGTGGAACAAGATTTGGAAGGCTAGAGTGCCGCCTAAAGTTCGACTTTTTTTCTGGAAGTTGGTAAGAGGCATCCTACCTACTCGTGCTGCTTTGAGGTCTCGTAAGGTTCTTCTCCCTGATTATTCCTGTTTGTTGTGTGGTCATGGTGATGAGACTGATATACATGTGTTTAAAAACTGTAAAGCTTTGCATTGCTTTTGGTTATTGGGCCCCTTAAAGCTGAAAGCAAAAGAGCACCCTTCTCACATATTGAATGAGTGGCTGTTTGATATGATGGACGTTCTATCTACTGAGCTTGTGGATGTATTTTTTATTTCTCTTTGGTCCATTTGGACAGAGAGAAATAATATTCTTTGGAGGAATAGTTCTTTCCAACCCACGCATTTGATTCAATGGAGTGTTAGGCAGCTACAAGATTTCCAGCAGGTTCATCCCAAAAGGGGAAAGCAGAAGAAGAGATCGATTACAAAGTGGGAGAACCCCCCAGCGGGTAGACTGAAAATTAATATTAATGGGGTTTTCAGACCGGAAAGTGGTTGTGGAGGCATTGGAGTGGTTGTTAGAGATGATTTGGGTAGGGGCATTGCGGCTATTGCTAGACCATTTGCACATGCACACTCAGCTCTGAATATGGAAGCTGAGGCGTGTAGAGCTGATCTTCTTCTTGGTATTCACCAAGGATGGTCTGAAATTAATATTGAAAGTGACTCCACCCTTTTAGTTGTAGCTCTCCAAAGTGGGGAGAAGAATTTGTCGGAGATGGGTCGGGTTTTAGATGACTGCAAGGATTACCGGTGTGATTTTCAGTCAGTTAAGATTCGACATATCTACCGTGAAGCAAACAGTGTTGCACTTAGACTTGCACACTTTGCTAGCATGTTTGTCATTGATGATGTTTGGTTAGACGAGACTCCTGCTATTATTCAGGATGTTCTCTACGAGGATTATTCTCACTGTTCTTATCATTGTATTACTAGTGTACGGGGTCCAGGTTTTACGTCCCCCCCGATGCAAATTTCTGTTATTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

1239

Amino Acids

142.08

Weight (kDa)

8.96

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 343 - 582 1.6e-27 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 893 - 963 3.5e-14 zinc-binding in reverse transcriptase
RVT_3 PF13456 1065 - 1187 3.1e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2681
Acc36I ACCTGC 1 cut(s) 3103
AccB1I GGYRCC 1 cut(s) 1414
AccB7I CCANNNNNTGG 1 cut(s) 2014
AccI GTMKAC 1 cut(s) 3181
AccII CGCG 1 cut(s) 1847
AccIII TCCGGA 1 cut(s) 892
AclI AACGTT 1 cut(s) 1728
AclWI GGATC 3 cut(s) 335, 2050, 2354
AcoI YGGCCR 1 cut(s) 1064
AcsI RAATTY 7 cut(s) 65, 263, 760, 1215, 2620, 3436, 3702
AcuI CTGAAG 2 cut(s) 1545, 2568
AfaI GTAC 7 cut(s) 130, 1091, 1384, 1639, 1866, 2615, 3669
AflIII ACRYGT 1 cut(s) 2851
AgeI ACCGGT 2 cut(s) 1119, 3480
AhlI ACTAGT 2 cut(s) 2557, 3662
AjnI CCWGG 3 cut(s) 395, 1174, 3676
AjuI GAANNNNNNNTTGG 2 cut(s) 1118, 1150
AloI GAACNNNNNNTCC 2 cut(s) 3037, 3069
Alw21I GWGCWC 3 cut(s) 451, 1570, 2925
Alw26I GTCTC 6 cut(s) 1444, 1886, 2204, 2790, 2834, 3590
AlwI GGATC 3 cut(s) 335, 2050, 2354
Aor13HI TCCGGA 1 cut(s) 892
AoxI GGCC 6 cut(s) 58, 1064, 1497, 2390, 2540, 2896
ApaI GGGCCC 2 cut(s) 62, 2900
ApeKI GCWGC 6 cut(s) 329, 956, 1540, 2657, 2774, 3094
ApoI RAATTY 7 cut(s) 65, 263, 760, 1215, 2620, 3436, 3702
AseI ATTAAT 5 cut(s) 324, 1002, 3192, 3198, 3381
AsiGI ACCGGT 2 cut(s) 1119, 3480
Asp700I GAANNNNTTC 1 cut(s) 783
AspLEI GCGC 1 cut(s) 2682
AsuC2I CCSGG 3 cut(s) 755, 888, 1912
AsuHPI GGTGA 9 cut(s) 605, 1067, 1461, 1469, 2045, 2391, 2675, 2846, 3353
AsuII TTCGAA 2 cut(s) 964, 2116
AsuNHI GCTAGC 3 cut(s) 1753, 2146, 3560
AvaII GGWCC 5 cut(s) 335, 625, 890, 3012, 3674
BaeGI GKGCMC 2 cut(s) 62, 2900
BanI GGYRCC 1 cut(s) 1414
BanII GRGCYC 3 cut(s) 62, 451, 2900
BauI CACGAG 1 cut(s) 2769
Bbv12I GWGCWC 3 cut(s) 451, 1570, 2925
BbvCI CCTCAGC 2 cut(s) 1494, 3327
BbvI GCAGC 6 cut(s) 341, 968, 1527, 2644, 2761, 3106
BceAI ACGGC 1 cut(s) 554
BcgI CGANNNNNNTGC 2 cut(s) 3584, 3618
BciT130I CCWGG 3 cut(s) 397, 1176, 3678
BciVI GTATCC 1 cut(s) 1399
BcnI CCSGG 3 cut(s) 755, 888, 1912
BcoDI GTCTC 6 cut(s) 1444, 1886, 2204, 2790, 2834, 3590
BcuI ACTAGT 2 cut(s) 2557, 3662
BfmI CTRYAG 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 3103
BfuI GTATCC 1 cut(s) 1399
BisI GCNGC 9 cut(s) 330, 957, 1064, 1541, 2658, 2717, 2775, 3095, 3276
BlpI GCTNAGC 1 cut(s) 450
BlsI GCNGC 9 cut(s) 331, 958, 1065, 1542, 2659, 2718, 2776, 3096, 3277
Bme1390I CCNGG 6 cut(s) 397, 755, 888, 1176, 1912, 3678
Bme18I GGWCC 5 cut(s) 335, 625, 890, 3012, 3674
BmiI GGNNCC 7 cut(s) 60, 626, 1416, 1434, 2898, 2899, 3675
BmrFI CCNGG 6 cut(s) 397, 755, 888, 1176, 1912, 3678
BmsI GCATC 8 cut(s) 793, 880, 1450, 1992, 2270, 2667, 2766, 3687
BmtI GCTAGC 3 cut(s) 1757, 2150, 3564
BpmI CTGGAG 1 cut(s) 418
Bpu10I CCTNAGC 3 cut(s) 281, 1494, 3327
Bpu1102I GCTNAGC 1 cut(s) 450
Bpu14I TTCGAA 2 cut(s) 964, 2116
BpuEI CTTGAG 3 cut(s) 774, 977, 1863
BpuMI CCSGG 3 cut(s) 755, 888, 1912
Bsa29I ATCGAT 1 cut(s) 3149
BsaAI YACGTR 1 cut(s) 1868
BsaBI GATNNNNATC 2 cut(s) 104, 594
BsaI GGTCTC 1 cut(s) 2790
BsaJI CCNNGG 6 cut(s) 886, 1174, 1175, 1418, 2363, 3364
BsaWI WCCGGW 5 cut(s) 108, 892, 1119, 3214, 3480
BsaXI ACNNNNNCTCC 8 cut(s) 35, 65, 2066, 2096, 3037, 3067, 3231, 3261
Bse118I RCCGGY 2 cut(s) 1119, 3480
Bse1I ACTGG 3 cut(s) 653, 2066, 2372
Bse3DI GCAATG 4 cut(s) 1087, 2283, 2878, 3270
Bse8I GATNNNNATC 2 cut(s) 104, 594
BseAI TCCGGA 1 cut(s) 892
BseBI CCWGG 3 cut(s) 397, 1176, 3678
BseCI ATCGAT 1 cut(s) 3149
BseDI CCNNGG 6 cut(s) 886, 1174, 1175, 1418, 2363, 3364
BseJI GATNNNNATC 2 cut(s) 104, 594
BseMI GCAATG 4 cut(s) 1087, 2283, 2878, 3270
BseMII CTCAG 7 cut(s) 464, 1485, 1806, 2528, 2970, 3318, 3321
BseNI ACTGG 3 cut(s) 653, 2066, 2372
BseRI GAGGAG 4 cut(s) 56, 259, 998, 1763
BseSI GKGCMC 2 cut(s) 62, 2900
BseXI GCAGC 6 cut(s) 341, 968, 1527, 2644, 2761, 3106
BseYI CCCAGC 1 cut(s) 3172
Bsh1236I CGCG 1 cut(s) 1847
BshFI GGCC 6 cut(s) 60, 1066, 1499, 2392, 2542, 2898
BshNI GGYRCC 1 cut(s) 1414
BshTI ACCGGT 2 cut(s) 1119, 3480
BshVI ATCGAT 1 cut(s) 3149
BsiHKAI GWGCWC 3 cut(s) 451, 1570, 2925
BsiSI CCGG 9 cut(s) 109, 755, 888, 893, 1120, 1911, 2180, 3215, 3481
BslFI GGGAC 5 cut(s) 868, 1157, 2360, 2428, 3673
BsmAI GTCTC 6 cut(s) 1444, 1886, 2204, 2790, 2834, 3590
BsmBI CGTCTC 1 cut(s) 1886
BsmFI GGGAC 5 cut(s) 868, 1157, 2360, 2428, 3673
BsnI GGCC 6 cut(s) 60, 1066, 1499, 2392, 2542, 2898
Bso31I GGTCTC 1 cut(s) 2790
Bsp119I TTCGAA 2 cut(s) 964, 2116
Bsp120I GGGCCC 2 cut(s) 58, 2896
Bsp1286I GDGCHC 5 cut(s) 62, 451, 1570, 2900, 2925
Bsp13I TCCGGA 1 cut(s) 892
Bsp1407I TGTACA 1 cut(s) 1089
Bsp143I GATC 8 cut(s) 193, 340, 595, 1057, 2055, 2359, 3146, 3343
Bsp1720I GCTNAGC 1 cut(s) 450
BspANI GGCC 6 cut(s) 60, 1066, 1499, 2392, 2542, 2898
BspCNI CTCAG 7 cut(s) 463, 1486, 1807, 2529, 2971, 3319, 3320
BspDI ATCGAT 1 cut(s) 3149
BspEI TCCGGA 1 cut(s) 892
BspFNI CGCG 1 cut(s) 1847
BspLI GGNNCC 7 cut(s) 60, 626, 1416, 1434, 2898, 2899, 3675
BspMI ACCTGC 1 cut(s) 3103
BspOI GCTAGC 3 cut(s) 1757, 2150, 3564
BspPI GGATC 3 cut(s) 335, 2050, 2354
BspT104I TTCGAA 2 cut(s) 964, 2116
BspT107I GGYRCC 1 cut(s) 1414
BspTNI GGTCTC 1 cut(s) 2790
BsrDI GCAATG 4 cut(s) 1087, 2283, 2878, 3270
BsrFI RCCGGY 2 cut(s) 1119, 3480
BsrGI TGTACA 1 cut(s) 1089
BsrI ACTGG 3 cut(s) 653, 2066, 2372
BssAI RCCGGY 2 cut(s) 1119, 3480
BssECI CCNNGG 6 cut(s) 886, 1174, 1175, 1418, 2363, 3364
BssMI GATC 8 cut(s) 193, 340, 595, 1057, 2055, 2359, 3146, 3343
BssSI CACGAG 1 cut(s) 2769
BssT1I CCWWGG 2 cut(s) 1418, 3364
Bst2BI CACGAG 1 cut(s) 2769
Bst2UI CCWGG 3 cut(s) 397, 1176, 3678
Bst4CI ACNGT 8 cut(s) 133, 815, 1012, 1387, 2867, 3521, 3533, 3644
Bst6I CTCTTC 4 cut(s) 264, 282, 748, 3137
BstAPI GCANNNNNTGC 1 cut(s) 3557
BstAUI TGTACA 1 cut(s) 1089
BstBAI YACGTR 1 cut(s) 1868
BstBI TTCGAA 2 cut(s) 964, 2116
BstC8I GCNNGC 9 cut(s) 456, 567, 1113, 1755, 2127, 2148, 2290, 2544, 3562
BstDSI CCRYGG 1 cut(s) 2363
BstENI CCTNNNNNAGG 1 cut(s) 212
BstFNI CGCG 1 cut(s) 1847
BstHHI GCGC 1 cut(s) 2682
BstKTI GATC 8 cut(s) 196, 343, 598, 1060, 2058, 2362, 3149, 3346
BstMAI GTCTC 6 cut(s) 1444, 1886, 2204, 2790, 2834, 3590
BstMBI GATC 8 cut(s) 193, 340, 595, 1057, 2055, 2359, 3146, 3343
BstNI CCWGG 3 cut(s) 397, 1176, 3678
BstNSI RCATGY 6 cut(s) 1523, 2125, 2129, 2855, 3302, 3568
BstSCI CCNGG 6 cut(s) 395, 753, 886, 1174, 1910, 3676
BstSFI CTRYAG 1 cut(s) 295
BstSLI GKGCMC 2 cut(s) 62, 2900
BstUI CGCG 1 cut(s) 1847
BstV1I GCAGC 6 cut(s) 341, 968, 1527, 2644, 2761, 3106
BstX2I RGATCY 2 cut(s) 2055, 2359
BstYI RGATCY 2 cut(s) 2055, 2359
Bsu15I ATCGAT 1 cut(s) 3149
BsuI GTATCC 1 cut(s) 1399
BsuRI GGCC 6 cut(s) 60, 1066, 1499, 2392, 2542, 2898
BsuTUI ATCGAT 1 cut(s) 3149
BtgI CCRYGG 1 cut(s) 2363
BtgZI GCGATG 1 cut(s) 2346
BtsI GCAGTG 1 cut(s) 1222
BtsIMutI CAGTG 5 cut(s) 820, 1222, 2059, 3538, 3640
BveI ACCTGC 1 cut(s) 3103
Cac8I GCNNGC 9 cut(s) 456, 567, 1113, 1755, 2127, 2148, 2290, 2544, 3562
CfoI GCGC 1 cut(s) 2682
Cfr10I RCCGGY 2 cut(s) 1119, 3480
ClaI ATCGAT 1 cut(s) 3149
CpoI CGGWCCG 1 cut(s) 890
CseI GACGC 1 cut(s) 391
Csp6I GTAC 7 cut(s) 129, 1090, 1383, 1638, 1865, 2614, 3668
CspAI ACCGGT 2 cut(s) 1119, 3480
CspI CGGWCCG 1 cut(s) 890
CviQI GTAC 7 cut(s) 129, 1090, 1383, 1638, 1865, 2614, 3668
DpnI GATC 8 cut(s) 195, 342, 597, 1059, 2057, 2361, 3148, 3345
DpnII GATC 8 cut(s) 193, 340, 595, 1057, 2055, 2359, 3146, 3343
DraI TTTAAA 1 cut(s) 2860
EaeI YGGCCR 1 cut(s) 1064
Eam1104I CTCTTC 4 cut(s) 264, 282, 748, 3137
EarI CTCTTC 4 cut(s) 264, 282, 748, 3137
Ecl136II GAGCTC 1 cut(s) 449
Eco130I CCWWGG 2 cut(s) 1418, 3364
Eco147I AGGCCT 1 cut(s) 2392
Eco24I GRGCYC 3 cut(s) 62, 451, 2900
Eco31I GGTCTC 1 cut(s) 2790
Eco32I GATATC 1 cut(s) 1188
Eco47I GGWCC 5 cut(s) 335, 625, 890, 3012, 3674
Eco53kI GAGCTC 1 cut(s) 449
Eco57I CTGAAG 2 cut(s) 1545, 2568
EcoICRI GAGCTC 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoO109I RGGNCCY 2 cut(s) 1498, 2897
EcoRII CCWGG 3 cut(s) 395, 1174, 3676
EcoRV GATATC 1 cut(s) 1188
EcoT14I CCWWGG 2 cut(s) 1418, 3364
EcoT22I ATGCAT 2 cut(s) 873, 2127
EcoT38I GRGCYC 3 cut(s) 62, 451, 2900
ErhI CCWWGG 2 cut(s) 1418, 3364
Esp3I CGTCTC 1 cut(s) 1886
FalI AAGNNNNNCTT 4 cut(s) 2503, 2535, 2715, 2747
FaqI GGGAC 5 cut(s) 868, 1157, 2360, 2428, 3673
FauI CCCGC 4 cut(s) 481, 2281, 2385, 3169
FblI GTMKAC 1 cut(s) 3181
Fnu4HI GCNGC 9 cut(s) 330, 957, 1064, 1541, 2658, 2717, 2775, 3095, 3276
FriOI GRGCYC 3 cut(s) 62, 451, 2900
Fsp4HI GCNGC 9 cut(s) 330, 957, 1064, 1541, 2658, 2717, 2775, 3095, 3276
FspI TGCGCA 1 cut(s) 2681
GlaI GCGC 1 cut(s) 2681
GluI GCNGC 9 cut(s) 330, 957, 1064, 1541, 2658, 2717, 2775, 3095, 3276
GsaI CCCAGC 1 cut(s) 3176
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 6 cut(s) 60, 1066, 1499, 2392, 2542, 2898
HapII CCGG 9 cut(s) 109, 755, 888, 893, 1120, 1911, 2180, 3215, 3481
HgaI GACGC 1 cut(s) 391
HhaI GCGC 1 cut(s) 2682
Hin6I GCGC 1 cut(s) 2680
HinP1I GCGC 1 cut(s) 2680
HincII GTYRAC 2 cut(s) 507, 822
HindII GTYRAC 2 cut(s) 507, 822
HindIII AAGCTT 3 cut(s) 1271, 2643, 2871
HpaII CCGG 9 cut(s) 109, 755, 888, 893, 1120, 1911, 2180, 3215, 3481
HphI GGTGA 9 cut(s) 605, 1067, 1461, 1469, 2045, 2391, 2675, 2846, 3353
Hpy166II GTNNAC 7 cut(s) 507, 822, 1808, 2482, 2614, 3182, 3668
Hpy8I GTNNAC 7 cut(s) 507, 822, 1808, 2482, 2614, 3182, 3668
Hpy99I CGWCG 1 cut(s) 407
HpyCH4III ACNGT 8 cut(s) 133, 815, 1012, 1387, 2867, 3521, 3533, 3644
HpyCH4IV ACGT 5 cut(s) 188, 1728, 1867, 2967, 3686
HpySE526I ACGT 5 cut(s) 188, 1728, 1867, 2967, 3686
HspAI GCGC 1 cut(s) 2680
Kpn2I TCCGGA 1 cut(s) 892
Kzo9I GATC 8 cut(s) 193, 340, 595, 1057, 2055, 2359, 3146, 3343
LmnI GCTCC 5 cut(s) 399, 829, 985, 1573, 1750
Lsp1109I GCAGC 6 cut(s) 341, 968, 1527, 2644, 2761, 3106
LweI GCATC 8 cut(s) 793, 880, 1450, 1992, 2270, 2667, 2766, 3687
MaeII ACGT 5 cut(s) 188, 1728, 1867, 2967, 3686
MaeIII GTNAC 8 cut(s) 21, 307, 408, 534, 629, 1503, 2301, 3392
MalI GATC 8 cut(s) 195, 342, 597, 1059, 2057, 2361, 3148, 3345
MboI GATC 8 cut(s) 193, 340, 595, 1057, 2055, 2359, 3146, 3343
MflI RGATCY 2 cut(s) 2055, 2359
MhlI GDGCHC 5 cut(s) 62, 451, 1570, 2900, 2925
MlyI GAGTC 8 cut(s) 299, 984, 1588, 1595, 1891, 2542, 3389, 3592
MmeI TCCRAC 5 cut(s) 93, 1460, 2451, 3085, 3423
Mph1103I ATGCAT 2 cut(s) 873, 2127
MroI TCCGGA 1 cut(s) 892
MroXI GAANNNNTTC 1 cut(s) 783
MslI CAYNNNNRTG 2 cut(s) 2835, 3239
MspA1I CMGCKG 5 cut(s) 332, 959, 2546, 2657, 3176
MspI CCGG 9 cut(s) 109, 755, 888, 893, 1120, 1911, 2180, 3215, 3481
MspR9I CCNGG 6 cut(s) 397, 755, 888, 1176, 1912, 3678
MvaI CCWGG 3 cut(s) 397, 1176, 3678
MvnI CGCG 1 cut(s) 1847
NciI CCSGG 3 cut(s) 755, 888, 1912
NdeII GATC 8 cut(s) 193, 340, 595, 1057, 2055, 2359, 3146, 3343
NheI GCTAGC 3 cut(s) 1753, 2146, 3560
NlaIV GGNNCC 7 cut(s) 60, 626, 1416, 1434, 2898, 2899, 3675
NmuCI GTSAC 2 cut(s) 1503, 3392
NsbI TGCGCA 1 cut(s) 2681
NsiI ATGCAT 2 cut(s) 873, 2127
NspI RCATGY 6 cut(s) 1523, 2125, 2129, 2855, 3302, 3568
NspV TTCGAA 2 cut(s) 964, 2116
PacI TTAATTAA 1 cut(s) 1929
PaeI GCATGC 1 cut(s) 2129
PasI CCCWGGG 1 cut(s) 1175
PceI AGGCCT 1 cut(s) 2392
PciI ACATGT 1 cut(s) 2851
PcsI WCGNNNNNNNCGW 1 cut(s) 3692
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 7 cut(s) 145, 470, 1024, 1978, 2183, 3076, 3505
PflMI CCANNNNNTGG 1 cut(s) 2014
PfoI TCCNGGA 1 cut(s) 753
PinAI ACCGGT 2 cut(s) 1119, 3480
PkrI GCNGC 9 cut(s) 331, 958, 1065, 1542, 2659, 2718, 2776, 3096, 3277
PleI GAGTC 8 cut(s) 298, 984, 1587, 1595, 1891, 2541, 3389, 3592
PpsI GAGTC 8 cut(s) 298, 984, 1587, 1595, 1891, 2541, 3389, 3592
Ppu21I YACGTR 1 cut(s) 1868
PscI ACATGT 1 cut(s) 2851
PshBI ATTAAT 5 cut(s) 324, 1002, 3192, 3198, 3381
Psp124BI GAGCTC 1 cut(s) 451
Psp1406I AACGTT 1 cut(s) 1728
Psp6I CCWGG 3 cut(s) 395, 1174, 3676
PspFI CCCAGC 1 cut(s) 3172
PspGI CCWGG 3 cut(s) 395, 1174, 3676
PspN4I GGNNCC 7 cut(s) 60, 626, 1416, 1434, 2898, 2899, 3675
PspOMI GGGCCC 2 cut(s) 58, 2896
PsuI RGATCY 2 cut(s) 2055, 2359
PvuII CAGCTG 3 cut(s) 332, 959, 2546
RsaI GTAC 7 cut(s) 130, 1091, 1384, 1639, 1866, 2615, 3669
RsaNI GTAC 7 cut(s) 129, 1090, 1383, 1638, 1865, 2614, 3668
RseI CAYNNNNRTG 2 cut(s) 2835, 3239
Rsr2I CGGWCCG 1 cut(s) 890
RsrII CGGWCCG 1 cut(s) 890
SacI GAGCTC 1 cut(s) 451
SatI GCNGC 9 cut(s) 330, 957, 1064, 1541, 2658, 2717, 2775, 3095, 3276
Sau3AI GATC 8 cut(s) 193, 340, 595, 1057, 2055, 2359, 3146, 3343
SchI GAGTC 8 cut(s) 299, 984, 1588, 1595, 1891, 2542, 3389, 3592
ScrFI CCNGG 6 cut(s) 397, 755, 888, 1176, 1912, 3678
SduI GDGCHC 5 cut(s) 62, 451, 1570, 2900, 2925
SfaNI GCATC 8 cut(s) 793, 880, 1450, 1992, 2270, 2667, 2766, 3687
SfcI CTRYAG 1 cut(s) 295
SfuI TTCGAA 2 cut(s) 964, 2116
SinI GGWCC 5 cut(s) 335, 625, 890, 3012, 3674
SmiMI CAYNNNNRTG 2 cut(s) 2835, 3239
SmlI CTYRAG 3 cut(s) 789, 992, 1878
SmoI CTYRAG 3 cut(s) 789, 992, 1878
SpeI ACTAGT 2 cut(s) 2557, 3662
SphI GCATGC 1 cut(s) 2129
SseBI AGGCCT 1 cut(s) 2392
SspI AATATT 5 cut(s) 712, 2344, 3037, 3196, 3385
SstI GAGCTC 1 cut(s) 451
StuI AGGCCT 1 cut(s) 2392
StyD4I CCNGG 6 cut(s) 395, 753, 886, 1174, 1910, 3676
StyI CCWWGG 2 cut(s) 1418, 3364
TaaI ACNGT 8 cut(s) 133, 815, 1012, 1387, 2867, 3521, 3533, 3644
TaiI ACGT 5 cut(s) 191, 1731, 1870, 2970, 3689
TaqI TCGA 7 cut(s) 405, 964, 2116, 2648, 2728, 3149, 3508
TatI WGTACW 2 cut(s) 1089, 1637
TauI GCSGC 3 cut(s) 1066, 2719, 3278
TfiI GAWTC 7 cut(s) 145, 470, 1024, 1978, 2183, 3076, 3505
TscAI CASTG 5 cut(s) 820, 1229, 2066, 3538, 3647
TseFI GTSAC 2 cut(s) 1503, 3392
TseI GCWGC 6 cut(s) 329, 956, 1540, 2657, 2774, 3094
Tsp45I GTSAC 2 cut(s) 1503, 3392
TspDTI ATGAA 7 cut(s) 62, 687, 1390, 1597, 1683, 1872, 3107
TspGWI ACGGA 3 cut(s) 617, 2352, 2432
TspRI CASTG 5 cut(s) 820, 1229, 2066, 3538, 3647
Van91I CCANNNNNTGG 1 cut(s) 2014
VpaK11BI GGWCC 5 cut(s) 335, 625, 890, 3012, 3674
VspI ATTAAT 5 cut(s) 324, 1002, 3192, 3198, 3381
XagI CCTNNNNNAGG 1 cut(s) 212
XapI RAATTY 7 cut(s) 65, 263, 760, 1215, 2620, 3436, 3702
XbaI TCTAGA 1 cut(s) 1315
XceI RCATGY 6 cut(s) 1523, 2125, 2129, 2855, 3302, 3568
XcmI CCANNNNNNNNNTGG 2 cut(s) 69, 2330
XmiI GTMKAC 1 cut(s) 3181
XmnI GAANNNNTTC 1 cut(s) 783
Zsp2I ATGCAT 2 cut(s) 873, 2127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.