Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002773

Physical Location & Seq

Genomic Coordinates Reverse (-)

23160468 .. 23164147

Gene Structure 3680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028467

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCACGGCAGAGAACATTTTATGTCTAATCTCTACTTGTTGCTACAGTGGTCTCCATATTCAACAGAGGCTGAGCTACTGAAACAATTTAATGACATTGGAGCTCATGGGACAAAAGTTATGATTTATAACTTATGGTTCAATGATGATGGGAGTGCAGAGCTGGACTTCTATACTGATCCCGAGTTAGCTAGACTTGGATGGAAAGAAGTCAATGAACAGCACATTGCTAATCGTTTCCATCACTCTCTCCGTGTTTACTTGTCTATCTTGTACTTGCGTATACCAGCAACCTTTCAAATAATACTGCGTGGGAGAGTTGTTGAGCATCATAACATTGCTGATGACCTAAAATTTCAAGAATATATCTTGCATAGACCTCAAACTGGGGGTACTGTGGAGCCGTATTGGCAAGTTGTGAGCTATTTAGACAGCAGGGGTCGTGGAGTTGTTGGTGTTTTGGAAGCAAATTTTGTTGAGCCGAGTATTAACAAACAAGATTTTGAGAGAACTTCTCTTTTTCAGAAACTTGAAGTCCGTTTGAAGGAGATGACGTGGGAATACTGGGATTATCACTGTGGACTAATTGGTAAAAACACAGTACTTGGAAAATCTGGGCCCTCAATTTCAAGCACCTTAAGGAAATCTGTACAAGGAACGATGAAGAGGAAAGAACATGATGATATTCTGCCGGTTGAAAATGTGAAAGGGGCCAAGGTGATCAATACTGGGAAAAGTCAGTCTGTACAGCTGGGGAATCCTACTGGAAATCAGCTGAAAGATCAAGAGGCTAAAAATCTGATGCAAGAGAACAACAGGCTGCGATCTAAATGCTTGGAATATGAGAAGAGGGAGGAGGAACTAAATCTTAAGGTGGCACAGCTTAAGAAGGAAATGAAAGCCGTTGATGATGAATACTCTCTAATGTTGGCTGAATTAGAAGCGTTGGGGGATGTCAAGGAAGAAAAGGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

326

Amino Acids

37.56

Weight (kDa)

6.16

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Morc6_S5	PF17942	82 - 130	2.2e-14	Morc6 ribosomal protein S5 domain 2-like
Morc6_S5	PF17942	133 - 189	6.3e-21	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19100
fragaria_vesca	FvH4_5g28960 FvH4_5g28960 FvH4_5g28960 FvH4_5g28960
malus_domestica	MD07G1122300.v1.1
prunus_persica	Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1
pyrus_communis	pycom07g11070
rosa_chinensis	RchiOBHm_Chr1g0350621 RchiOBHm_Chr5g0042471
rosa_laevigata	RLG00000028467 RLG00000034131
rosa_multiflora	Rmu_co8440237.1_g000001 Rmu_sc0017081.1_g000007 Rmu_ssc0000343.1_g000032
rosa_roxburghii	Rroxscaffold_1G00038160 Rroxscaffold_4G00304660
rosa_rugosa	Rorug01G0212800 Rorug01G0212900 Rorug05G0200600 Rorug05G0200700.1 Rorug05G0200800 Rorug05G0200900
rosa_samantha	Rh1BG195900 Rh1BG196200 Rh1DG223900 Rh1DG224200 Rh5AG286700 Rh5BG291300 Rh5CG323400 Rh5DG301000
rosa_wichuraiana	Rw1G019660 Rw5G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	283
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	353, 469
AfaI	GTAC	6 cut(s)	275, 394, 603, 651, 747, 973
AfiI	CCNNNNNNNGG	2 cut(s)	386, 544
AflII	CTTAAG	3 cut(s)	637, 869, 884
AgsI	TTSAA	8 cut(s)	63, 142, 299, 359, 533, 544, 630, 698
AjiI	CACGTC	1 cut(s)	555
AluBI	AGCT	8 cut(s)	76, 104, 163, 191, 423, 751, 775, 883
AluI	AGCT	8 cut(s)	76, 104, 163, 191, 423, 751, 775, 883
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	2 cut(s)	617, 711
ApaI	GGGCCC	1 cut(s)	621
ApeKI	GCWGC	1 cut(s)	820
ApoI	RAATTY	2 cut(s)	353, 469
AspS9I	GGNCC	3 cut(s)	617, 618, 711
AsuHPI	GGTGA	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	621
BanII	GRGCYC	2 cut(s)	106, 621
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	807
BccI	CCATC	3 cut(s)	143, 195, 249
BceAI	ACGGC	3 cut(s)	22, 388, 887
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BclI	TGATCA	1 cut(s)	720
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	44
BfrI	CTTAAG	3 cut(s)	637, 869, 884
BglI	GCCNNNNNGGC	1 cut(s)	409
BisI	GCNGC	1 cut(s)	821
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	822
BmcAI	AGTACT	1 cut(s)	603
BmeT110I	CYCGRG	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	555
BmgT120I	GGNCC	3 cut(s)	617, 618, 711
BmiI	GGNNCC	3 cut(s)	402, 619, 712
BmrI	ACTGGG	3 cut(s)	396, 574, 738
BmsI	GCATC	2 cut(s)	337, 792
BmuI	ACTGGG	3 cut(s)	396, 574, 738
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
Bpu1102I	GCTNAGC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	714
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 544
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	4 cut(s)	391, 569, 733, 769
Bse3DI	GCAATG	2 cut(s)	225, 336
BseDI	CCNNGG	1 cut(s)	714
BseGI	GGATG	2 cut(s)	206, 958
BseLI	CCNNNNNNNGG	2 cut(s)	386, 544
BseMI	GCAATG	2 cut(s)	225, 336
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	4 cut(s)	391, 569, 733, 769
BseRI	GAGGAG	1 cut(s)	869
BseSI	GKGCMC	1 cut(s)	621
BseXI	GCAGC	1 cut(s)	807
BseYI	CCCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	619, 713
BsiHKAI	GWGCWC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	692
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	386, 544
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	619, 713
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	182
Bsp120I	GGGCCC	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	106, 621
Bsp1407I	TGTACA	2 cut(s)	649, 745
Bsp143I	GATC	4 cut(s)	178, 720, 781, 824
Bsp1720I	GCTNAGC	1 cut(s)	72
BspANI	GGCC	2 cut(s)	619, 713
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	3 cut(s)	402, 619, 712
BspPI	GGATC	1 cut(s)	173
BspTI	CTTAAG	3 cut(s)	637, 869, 884
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	225, 336
BsrFI	RCCGGY	1 cut(s)	691
BsrGI	TGTACA	2 cut(s)	649, 745
BsrI	ACTGG	4 cut(s)	391, 569, 733, 769
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	1 cut(s)	714
BssMI	GATC	4 cut(s)	178, 720, 781, 824
BssNAI	GTATAC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	714
Bst1107I	GTATAC	1 cut(s)	284
Bst4CI	ACNGT	4 cut(s)	48, 397, 578, 601
Bst6I	CTCTTC	2 cut(s)	659, 842
BstAFI	CTTAAG	3 cut(s)	637, 869, 884
BstAUI	TGTACA	2 cut(s)	649, 745
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	206, 958
BstKTI	GATC	4 cut(s)	181, 723, 784, 827
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	4 cut(s)	178, 720, 781, 824
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	621
BstV1I	GCAGC	1 cut(s)	807
BstZ17I	GTATAC	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	619, 713
BtrI	CACGTC	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	206, 958
BtsIMutI	CAGTG	2 cut(s)	53, 574
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	3 cut(s)	617, 618, 711
Csp6I	GTAC	6 cut(s)	274, 393, 602, 650, 746, 972
CviAII	CATG	2 cut(s)	107, 677
CviQI	GTAC	6 cut(s)	274, 393, 602, 650, 746, 972
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	4 cut(s)	180, 722, 783, 826
DpnII	GATC	4 cut(s)	178, 720, 781, 824
Eam1104I	CTCTTC	2 cut(s)	659, 842
EarI	CTCTTC	2 cut(s)	659, 842
Ecl136II	GAGCTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	714
Eco24I	GRGCYC	2 cut(s)	106, 621
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	2 cut(s)	106, 621
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	2 cut(s)	110, 680
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	106, 676
FbaI	TGATCA	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	821
FokI	GGATG	2 cut(s)	213, 965
FriOI	GRGCYC	2 cut(s)	106, 621
Fsp4HI	GCNGC	1 cut(s)	821
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	1 cut(s)	821
GsaI	CCCAGC	1 cut(s)	755
HaeIII	GGCC	2 cut(s)	619, 713
HapII	CCGG	1 cut(s)	692
Hin1II	CATG	2 cut(s)	110, 680
HinfI	GANTC	1 cut(s)	757
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	3 cut(s)	259, 284, 581
Hpy188I	TCNGA	2 cut(s)	525, 801
Hpy188III	TCNNGA	3 cut(s)	182, 359, 785
Hpy8I	GTNNAC	3 cut(s)	259, 284, 581
HpyAV	CCTTC	2 cut(s)	538, 883
HpyCH4III	ACNGT	4 cut(s)	48, 397, 578, 601
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	4 cut(s)	4, 158, 373, 805
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	2 cut(s)	110, 680
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	4 cut(s)	178, 720, 781, 824
LmnI	GCTCC	2 cut(s)	101, 400
Lsp1109I	GCAGC	1 cut(s)	807
LweI	GCATC	2 cut(s)	337, 792
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	554
MalI	GATC	4 cut(s)	180, 722, 783, 826
MboI	GATC	4 cut(s)	178, 720, 781, 824
MboII	GAAGA	3 cut(s)	676, 859, 974
MhlI	GDGCHC	2 cut(s)	106, 621
MluCI	AATT	6 cut(s)	86, 353, 469, 585, 624, 935
MnlI	CCTC	8 cut(s)	61, 390, 631, 660, 781, 843, 847, 850
MseI	TTAA	5 cut(s)	90, 489, 638, 870, 885
MspA1I	CMGCKG	2 cut(s)	751, 775
MspCI	CTTAAG	3 cut(s)	637, 869, 884
MspI	CCGG	1 cut(s)	692
MwoI	GCNNNNNNNGC	1 cut(s)	409
NdeII	GATC	4 cut(s)	178, 720, 781, 824
NlaIII	CATG	2 cut(s)	110, 680
NlaIV	GGNNCC	3 cut(s)	402, 619, 712
NmeAIII	GCCGAG	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	757
PkrI	GCNGC	1 cut(s)	822
PsiI	TTATAA	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	402, 619, 712
PspOMI	GGGCCC	1 cut(s)	617
PspPI	GGNCC	3 cut(s)	617, 618, 711
PstNI	CAGNNNCTG	1 cut(s)	71
PvuII	CAGCTG	2 cut(s)	751, 775
RsaI	GTAC	6 cut(s)	275, 394, 603, 651, 747, 973
RsaNI	GTAC	6 cut(s)	274, 393, 602, 650, 746, 972
SacI	GAGCTC	1 cut(s)	106
SaqAI	TTAA	5 cut(s)	90, 489, 638, 870, 885
SatI	GCNGC	1 cut(s)	821
Sau3AI	GATC	4 cut(s)	178, 720, 781, 824
Sau96I	GGNCC	3 cut(s)	617, 618, 711
ScaI	AGTACT	1 cut(s)	603
SduI	GDGCHC	2 cut(s)	106, 621
SfaNI	GCATC	2 cut(s)	337, 792
SfcI	CTRYAG	1 cut(s)	44
SmlI	CTYRAG	3 cut(s)	637, 869, 884
SmoI	CTYRAG	3 cut(s)	637, 869, 884
Sse9I	AATT	6 cut(s)	86, 353, 469, 585, 624, 935
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	4 cut(s)	48, 397, 578, 601
TaiI	ACGT	1 cut(s)	557
TasI	AATT	6 cut(s)	86, 353, 469, 585, 624, 935
TatI	WGTACW	4 cut(s)	273, 601, 649, 745
TfiI	GAWTC	1 cut(s)	757
Tru1I	TTAA	5 cut(s)	90, 489, 638, 870, 885
Tru9I	TTAA	5 cut(s)	90, 489, 638, 870, 885
TscAI	CASTG	2 cut(s)	53, 581
TseI	GCWGC	1 cut(s)	820
TspDTI	ATGAA	4 cut(s)	231, 677, 911, 927
TspGWI	ACGGA	2 cut(s)	242, 527
TspRI	CASTG	2 cut(s)	53, 581
Vha464I	CTTAAG	3 cut(s)	637, 869, 884
XapI	RAATTY	2 cut(s)	353, 469
XmiI	GTMKAC	1 cut(s)	283
XspI	CTAG	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.