RchiOBHm_Chr1g0350881

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012482
Physical Location & Seq
Forward (+)
44033357 .. 44035877
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1335 bp
ATGGACGACACCCAAGTCGTGAAGGTCAAGCATGAGGATGATGAAGGATCGCCGCCGCCGTCGATCAAGCTCGGTCTTTCGATCGGCGGTGATGGTGGTGATTGTGAGGTAGTGGGGAAGAGGAGGAGGAGTGAGTTTACGGTGGCTCAGTTGGATGAGTTGGAGCATCAGAGGCTTGTTTATAAGTACATAGCAGCTGGGTTGCCTGCTCCTTTTCAGCTTGTGCTTCCCATTTGGAAGAGTGTGGCTGCCGGTTTTTCTAATGCTGCTTTCTACCAGCAATATCCCAGCTTTCTAGGATATGGGGGTTTCGACTACAGGAGTAAAATGGATACTGAGCCAGGAAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGTAGTAGGGATGTAGTGCCTGATGAGAAGTACTGTGAGAAACACATGCACAGAGGGCGCCATCGTTCAAGAAAGCCTGTGGAAACTTCTCAAGTCACTTCTCCTCCCAGCACAAAGCTACTGAAGAATTCAGATGGCGAACTGTTGAATTCAAAGAAAAACCTTCAGATTCAAACCCCCAAAGGCCTTCAACTTATGGCGCAACCCTCCAATAATGGTAGTGTCAGCCACAGTCAAACCACCTTCTCTAGTGGCTATCATGAGTTACCTAAGAACATTAGTACAGTTGCACACACTACCAGCACACCTTCATACAGAACCGCTGTTACCCCTGCTGCTGTAGCCCCTTCCACCACTGCTGGACAAGTGATCGCAACCGCCAGCACTTGCAATGACAATAACATCTGGATCGGTGTGAAAGACTACGGTTGCAACTATCATGCTGGTAATTATGGCATTATCAGAGGAAGCAGAAACAACATCAATGTTGGCAGTAATATATCGTCCGGATCAGGCTTCTCCCCAAAAAGTGTTCTTCAGGCAGGACATATGATTCTTGTAAATTGCAATGGCTTATACTTTGACAACAGACGTGGCGAAGAACTTGAACCAGGCAGGTGTAGGAGGACAGATGGAAAGAAGTGGCGGTGCAAAAGGGAAGTTCTTCCTGATCAGAAGTACTGTGACCGGCATATCCACAGAGGAGTAAAGCAAATGAGAACATCTGGCCCTGTTACTGCTGCTTCTACCTTGGCCACTGCAATGAATTCTACTCGGCCCTCTCAGACCACAGGCATAGCTGGAGAAACTGATTGTGCAATCCCTAATACAAATCTCACCATGTCCATCCCAGCTAGATCACCACTGATGCAAAATGATGAAAAAAGTGATTCCACTAGCGACAGTGACGCAACCATTACAGACACCAGCCTTGCTGCTTATGAACAGCTGATTTAG

Protein Analysis

444

Amino Acids

48.61

Weight (kDa)

9.05

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 46 - 79 1.8e-10 QLQ
WRC PF08879 113 - 154 3e-21 WRC
WRC PF08879 329 - 367 3.8e-19 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45480 AT2G45480 AT2G45480
fragaria_vesca FvH4_7g12130 FvH4_7g12130
malus_domestica MD02G1201000.v1.1
prunus_persica Prupe.2G148100_v2.0.a1
pyrus_communis pycom02g16430
rosa_chinensis RchiOBHm_Chr1g0350881
rosa_laevigata RLG00000028446
rosa_multiflora Rmu_sc0014584.1_g000012
rosa_roxburghii Rroxscaffold_4G00304440
rosa_rugosa Rorug01G0214900 Rorug01G0215000
rosa_samantha Rh1AG229300 Rh1BG199300 Rh1CG214100 Rh1DG227200
rosa_wichuraiana Rw1G019870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AarI CACCTGC 1 cut(s) 984
AasI GACNNNNNNGTC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 984
AccB1I GGYRCC 1 cut(s) 435
AccIII TCCGGA 1 cut(s) 884
AciI CCGC 6 cut(s) 53, 56, 87, 699, 756, 1024
AclWI GGATC 3 cut(s) 55, 794, 895
AcoI YGGCCR 1 cut(s) 1131
AcsI RAATTY 3 cut(s) 505, 526, 1144
AcuI CTGAAG 3 cut(s) 521, 527, 899
AcyI GRCGYC 1 cut(s) 436
AfaI GTAC 4 cut(s) 188, 410, 661, 1058
AgsI TTSAA 6 cut(s) 447, 526, 531, 551, 569, 986
AjiI CACGTC 1 cut(s) 971
AjnI CCWGG 2 cut(s) 340, 988
AluBI AGCT 8 cut(s) 70, 197, 220, 291, 496, 1178, 1232, 1327
AluI AGCT 8 cut(s) 70, 197, 220, 291, 496, 1178, 1232, 1327
AlwI GGATC 3 cut(s) 55, 794, 895
Aor13HI TCCGGA 1 cut(s) 884
AoxI GGCC 4 cut(s) 562, 1105, 1131, 1154
ApeKI GCWGC 6 cut(s) 194, 248, 266, 713, 1118, 1313
ApoI RAATTY 3 cut(s) 505, 526, 1144
Asp700I GAANNNNTTC 1 cut(s) 1041
AspLEI GCGC 2 cut(s) 438, 580
AspS9I GGNCC 2 cut(s) 1106, 1155
AsuHPI GGTGA 4 cut(s) 101, 110, 1207, 1230
BalI TGGCCA 1 cut(s) 1133
BanI GGYRCC 1 cut(s) 435
BbvI GCAGC 6 cut(s) 206, 235, 253, 700, 1105, 1300
BccI CCATC 6 cut(s) 86, 356, 447, 506, 1004, 1232
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 2 cut(s) 342, 990
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 1048
BfaI CTAG 4 cut(s) 296, 627, 1233, 1275
BfmI CTRYAG 2 cut(s) 316, 717
BfoI RGCGCY 1 cut(s) 439
BfuAI ACCTGC 1 cut(s) 984
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 8 cut(s) 53, 56, 195, 249, 267, 714, 1119, 1314
BlsI GCNGC 8 cut(s) 54, 57, 196, 250, 268, 715, 1120, 1315
BmcAI AGTACT 2 cut(s) 410, 1058
Bme1390I CCNGG 2 cut(s) 342, 990
BmgBI CACGTC 1 cut(s) 971
BmgT120I GGNCC 2 cut(s) 1106, 1155
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 342, 990
BmsI GCATC 2 cut(s) 175, 1236
BpmI CTGGAG 1 cut(s) 1200
BpuEI CTTGAG 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 1128
BsaWI WCCGGW 1 cut(s) 884
BsaXI ACNNNNNCTCC 6 cut(s) 115, 145, 367, 397, 466, 496
Bse118I RCCGGY 2 cut(s) 251, 1065
Bse3DI GCAATG 3 cut(s) 775, 952, 1146
BseAI TCCGGA 1 cut(s) 884
BseBI CCWGG 2 cut(s) 342, 990
BseDI CCNNGG 1 cut(s) 1128
BseGI GGATG 4 cut(s) 43, 160, 394, 1224
BseMI GCAATG 3 cut(s) 775, 952, 1146
BseMII CTCAG 3 cut(s) 161, 327, 1175
BseRI GAGGAG 5 cut(s) 136, 139, 142, 471, 1095
BseXI GCAGC 6 cut(s) 206, 235, 253, 700, 1105, 1300
BseYI CCCAGC 4 cut(s) 197, 287, 485, 1228
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 4 cut(s) 564, 1107, 1133, 1156
BshNI GGYRCC 1 cut(s) 435
BsiEI CGRYCG 1 cut(s) 84
BsiSI CCGG 3 cut(s) 252, 885, 1066
BsnI GGCC 4 cut(s) 564, 1107, 1133, 1156
Bsp13I TCCGGA 1 cut(s) 884
Bsp143I GATC 8 cut(s) 47, 63, 81, 747, 786, 887, 1048, 1235
BspACI CCGC 6 cut(s) 53, 56, 87, 699, 756, 1024
BspANI GGCC 4 cut(s) 564, 1107, 1133, 1156
BspCNI CTCAG 3 cut(s) 160, 328, 1174
BspEI TCCGGA 1 cut(s) 884
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 437
BspMI ACCTGC 1 cut(s) 984
BspPI GGATC 3 cut(s) 55, 794, 895
BspT107I GGYRCC 1 cut(s) 435
BsrDI GCAATG 3 cut(s) 775, 952, 1146
BsrFI RCCGGY 2 cut(s) 251, 1065
BssAI RCCGGY 2 cut(s) 251, 1065
BssECI CCNNGG 1 cut(s) 1128
BssMI GATC 8 cut(s) 47, 63, 81, 747, 786, 887, 1048, 1235
BssNI GRCGYC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 1128
Bst2UI CCWGG 2 cut(s) 342, 990
Bst4CI ACNGT 8 cut(s) 142, 413, 522, 611, 664, 806, 1061, 1283
Bst6I CTCTTC 2 cut(s) 113, 233
BstACI GRCGYC 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 207, 760
BstDEI CTNAG 4 cut(s) 147, 336, 648, 1161
BstF5I GGATG 4 cut(s) 43, 160, 394, 1224
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 2 cut(s) 438, 580
BstKTI GATC 8 cut(s) 50, 66, 84, 750, 789, 890, 1051, 1238
BstMBI GATC 8 cut(s) 47, 63, 81, 747, 786, 887, 1048, 1235
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 3 cut(s) 172, 433, 719
BstNI CCWGG 2 cut(s) 342, 990
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 340, 988
BstSFI CTRYAG 2 cut(s) 316, 717
BstV1I GCAGC 6 cut(s) 206, 235, 253, 700, 1105, 1300
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 4 cut(s) 564, 1107, 1133, 1156
BtrI CACGTC 1 cut(s) 971
BtsCI GGATG 4 cut(s) 43, 160, 394, 1224
BtsI GCAGTG 2 cut(s) 732, 1134
BtsIMutI CAGTG 4 cut(s) 732, 1134, 1241, 1288
BveI ACCTGC 1 cut(s) 984
Cac8I GCNNGC 2 cut(s) 207, 760
CciI TCATGA 1 cut(s) 637
CfoI GCGC 2 cut(s) 438, 580
Cfr10I RCCGGY 2 cut(s) 251, 1065
Cfr13I GGNCC 2 cut(s) 1106, 1155
CseI GACGC 1 cut(s) 1295
Csp6I GTAC 4 cut(s) 187, 409, 660, 1057
CspCI CAANNNNNGTGG 2 cut(s) 952, 987
CviAII CATG 5 cut(s) 32, 424, 638, 818, 1219
CviQI GTAC 4 cut(s) 187, 409, 660, 1057
DdeI CTNAG 4 cut(s) 147, 336, 648, 1161
DinI GGCGCC 1 cut(s) 437
DpnI GATC 8 cut(s) 49, 65, 83, 749, 788, 889, 1050, 1237
DpnII GATC 8 cut(s) 47, 63, 81, 747, 786, 887, 1048, 1235
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 1131
Eam1104I CTCTTC 2 cut(s) 113, 233
EarI CTCTTC 2 cut(s) 113, 233
Eco130I CCWWGG 1 cut(s) 1128
Eco147I AGGCCT 1 cut(s) 564
Eco57I CTGAAG 3 cut(s) 521, 527, 899
EcoRI GAATTC 3 cut(s) 505, 526, 1144
EcoRII CCWGG 2 cut(s) 340, 988
EcoT14I CCWWGG 1 cut(s) 1128
EgeI GGCGCC 1 cut(s) 437
EheI GGCGCC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 1128
FaeI CATG 5 cut(s) 35, 427, 641, 821, 1222
FatI CATG 5 cut(s) 31, 423, 637, 817, 1218
FauNDI CATATG 1 cut(s) 927
FbaI TGATCA 1 cut(s) 1048
Fnu4HI GCNGC 8 cut(s) 53, 56, 195, 249, 267, 714, 1119, 1314
FokI GGATG 4 cut(s) 50, 167, 401, 1211
Fsp4HI GCNGC 8 cut(s) 53, 56, 195, 249, 267, 714, 1119, 1314
FspBI CTAG 4 cut(s) 296, 627, 1233, 1275
GlaI GCGC 2 cut(s) 437, 579
GluI GCNGC 8 cut(s) 53, 56, 195, 249, 267, 714, 1119, 1314
GsaI CCCAGC 4 cut(s) 201, 291, 489, 1232
GsuI CTGGAG 1 cut(s) 1200
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 4 cut(s) 564, 1107, 1133, 1156
HapII CCGG 3 cut(s) 252, 885, 1066
HgaI GACGC 1 cut(s) 1295
HhaI GCGC 2 cut(s) 438, 580
Hin1I GRCGYC 1 cut(s) 436
Hin1II CATG 5 cut(s) 35, 427, 641, 821, 1222
Hin6I GCGC 2 cut(s) 436, 578
HinP1I GCGC 2 cut(s) 436, 578
HinfI GANTC 3 cut(s) 547, 931, 1268
HpaII CCGG 3 cut(s) 252, 885, 1066
HphI GGTGA 4 cut(s) 101, 110, 1207, 1230
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 6 cut(s) 171, 511, 546, 842, 1053, 1164
Hpy188III TCNNGA 6 cut(s) 19, 447, 638, 784, 885, 1046
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 8 cut(s) 16, 38, 339, 551, 575, 631, 696, 735
HpyCH4III ACNGT 8 cut(s) 142, 413, 522, 611, 664, 806, 1061, 1283
HpyCH4IV ACGT 1 cut(s) 970
HpyCH4V TGCA 9 cut(s) 427, 668, 768, 810, 945, 1029, 1139, 1196, 1249
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 433, 719
HpyF3I CTNAG 4 cut(s) 147, 336, 648, 1161
HpySE526I ACGT 1 cut(s) 970
Hsp92I GRCGYC 1 cut(s) 436
Hsp92II CATG 5 cut(s) 35, 427, 641, 821, 1222
HspAI GCGC 2 cut(s) 436, 578
KasI GGCGCC 1 cut(s) 435
Kpn2I TCCGGA 1 cut(s) 884
Ksp22I TGATCA 1 cut(s) 1048
Kzo9I GATC 8 cut(s) 47, 63, 81, 747, 786, 887, 1048, 1235
LmnI GCTCC 2 cut(s) 163, 214
Lsp1109I GCAGC 6 cut(s) 206, 235, 253, 700, 1105, 1300
LweI GCATC 2 cut(s) 175, 1236
MaeI CTAG 4 cut(s) 296, 627, 1233, 1275
MaeII ACGT 1 cut(s) 970
MaeIII GTNAC 6 cut(s) 472, 642, 703, 1061, 1111, 1283
MalI GATC 8 cut(s) 49, 65, 83, 749, 788, 889, 1050, 1237
MboI GATC 8 cut(s) 47, 63, 81, 747, 786, 887, 1048, 1235
MboII GAAGA 7 cut(s) 130, 250, 366, 514, 905, 989, 1034
MlsI TGGCCA 1 cut(s) 1133
MluCI AATT 5 cut(s) 505, 526, 826, 940, 1144
MluNI TGGCCA 1 cut(s) 1133
Mly113I GGCGCC 1 cut(s) 436
MmeI TCCRAC 2 cut(s) 132, 141
Mox20I TGGCCA 1 cut(s) 1133
MroI TCCGGA 1 cut(s) 884
MroXI GAANNNNTTC 1 cut(s) 1041
MscI TGGCCA 1 cut(s) 1133
MslI CAYNNNNRTG 2 cut(s) 36, 1139
Msp20I TGGCCA 1 cut(s) 1133
MspA1I CMGCKG 3 cut(s) 197, 701, 1327
MspI CCGG 3 cut(s) 252, 885, 1066
MspR9I CCNGG 2 cut(s) 342, 990
MvaI CCWGG 2 cut(s) 342, 990
MwoI GCNNNNNNNGC 3 cut(s) 172, 433, 719
NarI GGCGCC 1 cut(s) 436
NdeI CATATG 1 cut(s) 927
NdeII GATC 8 cut(s) 47, 63, 81, 747, 786, 887, 1048, 1235
NlaIII CATG 5 cut(s) 35, 427, 641, 821, 1222
NlaIV GGNNCC 1 cut(s) 437
NmeAIII GCCGAG 1 cut(s) 1132
NmuCI GTSAC 3 cut(s) 472, 1061, 1283
NspI RCATGY 1 cut(s) 427
PagI TCATGA 1 cut(s) 637
PaqCI CACCTGC 1 cut(s) 984
PceI AGGCCT 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 1041
PfeI GAWTC 3 cut(s) 547, 931, 1268
PkrI GCNGC 8 cut(s) 54, 57, 196, 250, 268, 715, 1120, 1315
Ple19I CGATCG 1 cut(s) 84
PluTI GGCGCC 1 cut(s) 439
PsiI TTATAA 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 340, 988
PspFI CCCAGC 4 cut(s) 197, 287, 485, 1228
PspGI CCWGG 2 cut(s) 340, 988
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 2 cut(s) 1106, 1155
PsrI GAACNNNNNNTAC 2 cut(s) 688, 720
PvuI CGATCG 1 cut(s) 84
PvuII CAGCTG 2 cut(s) 197, 1327
RsaI GTAC 4 cut(s) 188, 410, 661, 1058
RsaNI GTAC 4 cut(s) 187, 409, 660, 1057
RseI CAYNNNNRTG 2 cut(s) 36, 1139
SatI GCNGC 8 cut(s) 53, 56, 195, 249, 267, 714, 1119, 1314
Sau3AI GATC 8 cut(s) 47, 63, 81, 747, 786, 887, 1048, 1235
Sau96I GGNCC 2 cut(s) 1106, 1155
ScaI AGTACT 2 cut(s) 410, 1058
ScrFI CCNGG 2 cut(s) 342, 990
SfaNI GCATC 2 cut(s) 175, 1236
SfcI CTRYAG 2 cut(s) 316, 717
SfoI GGCGCC 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 36, 1139
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 5 cut(s) 505, 526, 826, 940, 1144
SseBI AGGCCT 1 cut(s) 564
SsiI CCGC 6 cut(s) 53, 56, 87, 699, 756, 1024
SspDI GGCGCC 1 cut(s) 435
SspMI CTAG 4 cut(s) 296, 627, 1233, 1275
StuI AGGCCT 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 340, 988
StyI CCWWGG 1 cut(s) 1128
TaaI ACNGT 8 cut(s) 142, 413, 522, 611, 664, 806, 1061, 1283
TaiI ACGT 1 cut(s) 973
TaqI TCGA 3 cut(s) 62, 80, 312
TaqII GACCGA 1 cut(s) 62
TasI AATT 5 cut(s) 505, 526, 826, 940, 1144
TatI WGTACW 4 cut(s) 186, 408, 659, 1056
TauI GCSGC 2 cut(s) 55, 58
TfiI GAWTC 3 cut(s) 547, 931, 1268
TscAI CASTG 4 cut(s) 739, 1141, 1248, 1288
TseFI GTSAC 3 cut(s) 472, 1061, 1283
TseI GCWGC 6 cut(s) 194, 248, 266, 713, 1118, 1313
Tsp45I GTSAC 3 cut(s) 472, 1061, 1283
TspDTI ATGAA 5 cut(s) 57, 678, 1157, 1272, 1335
TspRI CASTG 4 cut(s) 739, 1141, 1248, 1288
XapI RAATTY 3 cut(s) 505, 526, 1144
XceI RCATGY 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 1041
XspI CTAG 4 cut(s) 296, 627, 1233, 1275
ZrmI AGTACT 2 cut(s) 410, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.