Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Reverse (-)

48900752 .. 48902963

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCAAGATGGAGATTGTGGTGGAGAGCAATTCGGGGATTTTCCAGGCCCAAGAGGGTTGGGGATAGGCAGGTGGTGTGGATGAGCCATGGGGATGAGGTGGCTAAGTTGCCCCAGGGGTTCCGGGTGATGGCGCAGAGCCAGCAGGGAGTGGTGGCCGCCAGGGAGTGGAGGTTCTATGGGCTGCAGTACCACCCTGAGAGCCAATGCTTTGCTCACCTTCGCAGTCACAATTCTCGCCCTCATGTGCGCCATGGCCTCCATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

89

Amino Acids

10.62

Weight (kDa)

11.66

Isoelectric Point (pI)

71.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	19 - 70	8.4e-10	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AccB7I	CCANNNNNTGG	1 cut(s)	168
AciI	CCGC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	130, 168
AjnI	CCWGG	3 cut(s)	44, 114, 161
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AoxI	GGCC	3 cut(s)	47, 156, 256
ApeKI	GCWGC	1 cut(s)	184
AspLEI	GCGC	2 cut(s)	136, 252
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	139, 209
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	3, 124
BciT130I	CCWGG	3 cut(s)	46, 116, 163
BcnI	CCSGG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	159, 185
BlsI	GCNGC	2 cut(s)	160, 186
Bme1390I	CCNGG	4 cut(s)	46, 116, 125, 163
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	4 cut(s)	46, 116, 125, 163
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	5 cut(s)	88, 114, 115, 162, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 168
BseBI	CCWGG	3 cut(s)	46, 116, 163
BseDI	CCNNGG	5 cut(s)	88, 114, 115, 162, 253
BseGI	GGATG	2 cut(s)	87, 100
BseLI	CCNNNNNNNGG	2 cut(s)	130, 168
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	171
BshFI	GGCC	3 cut(s)	49, 158, 258
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	130, 168
BsnI	GGCC	3 cut(s)	49, 158, 258
Bsp19I	CCATGG	2 cut(s)	88, 253
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	3 cut(s)	49, 158, 258
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	122
BspMAI	CTGCAG	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	61
BssECI	CCNNGG	5 cut(s)	88, 114, 115, 162, 253
BssT1I	CCWWGG	2 cut(s)	88, 253
Bst2UI	CCWGG	3 cut(s)	46, 116, 163
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	105, 198
BstDSI	CCRYGG	2 cut(s)	88, 253
BstF5I	GGATG	2 cut(s)	87, 100
BstHHI	GCGC	2 cut(s)	136, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	3 cut(s)	46, 116, 163
BstSCI	CCNGG	4 cut(s)	44, 114, 123, 161
BstSFI	CTRYAG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	49, 158, 258
BtgI	CCRYGG	2 cut(s)	88, 253
BtsCI	GGATG	2 cut(s)	87, 100
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	2 cut(s)	136, 252
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	4 cut(s)	89, 245, 254, 263
CviJI	RGCY	8 cut(s)	49, 87, 104, 141, 158, 184, 204, 258
CviKI_1	RGCY	8 cut(s)	49, 87, 104, 141, 158, 184, 204, 258
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	105, 198
EaeI	YGGCCR	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	88, 253
EcoRII	CCWGG	3 cut(s)	44, 114, 161
EcoT14I	CCWWGG	2 cut(s)	88, 253
ErhI	CCWWGG	2 cut(s)	88, 253
FaeI	CATG	4 cut(s)	92, 248, 257, 266
FaiI	YATR	5 cut(s)	90, 180, 246, 255, 264
FatI	CATG	4 cut(s)	88, 244, 253, 262
Fnu4HI	GCNGC	2 cut(s)	159, 185
FokI	GGATG	2 cut(s)	94, 107
Fsp4HI	GCNGC	2 cut(s)	159, 185
GlaI	GCGC	2 cut(s)	135, 251
GluI	GCNGC	2 cut(s)	159, 185
HaeIII	GGCC	3 cut(s)	49, 158, 258
HapII	CCGG	1 cut(s)	124
HhaI	GCGC	2 cut(s)	136, 252
Hin1II	CATG	4 cut(s)	92, 248, 257, 266
Hin6I	GCGC	2 cut(s)	134, 250
HinP1I	GCGC	2 cut(s)	134, 250
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	2 cut(s)	139, 209
Hpy188I	TCNGA	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	2 cut(s)	105, 198
Hsp92II	CATG	4 cut(s)	92, 248, 257, 266
HspAI	GCGC	2 cut(s)	134, 250
Lsp1109I	GCAGC	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	227
MluCI	AATT	2 cut(s)	30, 232
MnlI	CCTC	5 cut(s)	48, 91, 165, 252, 269
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	4 cut(s)	46, 116, 125, 163
MvaI	CCWGG	3 cut(s)	46, 116, 163
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	2 cut(s)	88, 253
NlaIII	CATG	4 cut(s)	92, 248, 257, 266
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	227
PaqCI	CACCTGC	1 cut(s)	61
PasI	CCCWGGG	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	160, 186
Psp6I	CCWGG	3 cut(s)	44, 114, 161
PspGI	CCWGG	3 cut(s)	44, 114, 161
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	189
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	2 cut(s)	159, 185
Sau96I	GGNCC	1 cut(s)	48
ScrFI	CCNGG	4 cut(s)	46, 116, 125, 163
SetI	ASST	4 cut(s)	75, 102, 176, 222
SfcI	CTRYAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	2 cut(s)	30, 232
SsiI	CCGC	1 cut(s)	159
StyD4I	CCNGG	4 cut(s)	44, 114, 123, 161
StyI	CCWWGG	2 cut(s)	88, 253
TasI	AATT	2 cut(s)	30, 232
TauI	GCSGC	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.