RchiOBHm_Chr1g0359581

Aspartic proteinase CDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013789
Physical Location & Seq
Forward (+)
51502792 .. 51503722
931 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGATTTTCGGGTGCCGTCACTCTAATGTAGACCCGAGATCAGGTTACAATCCACCCGGAATTGTGGGACTAAGCAGAGAACCTTCTTCCCTGGTAGGCCAAATTTCGTATCCTCATGTTTCGTATTGCACATCAGCTAATAATGAAGGCAACCATAGCTCTGTTAAGTTCGGCTCTGTAGCAGTCATCACTGAGAATACTACTCAAACCCCATTGTTAACTGGTCCAATTGATTTTTACTCTGTAAGCCTAGAAGGCATTAGTGTTGATGGTACAATGTTGGACATTCCGAAATCAGTGTTCAATATGACGCCAGAAGGAGAAGGAGGGGTCTTCATGGATACAGGAACAGATCATACTCAGCTGGTACTGCCAGCATTTTATGCAGTCACCAATAAAATAGAGGATATCTTGTCGGATTTCAAATCCTTACCAGATGTGGATGGCAGGTTTCCAGTGTGTTACAACGATACGAATTTTAGATTGGATTCGACAGAAATAGTATTCCAATTTACAGGACTGGAGTTTCCGTTGAGTGCCAATAACACTTGGGATCAGAACTCTCTGGGATACCATTGTTTGGCTATATTGCCAGCATTTAGGGGTCATTCTGTTCTTGGAATGTACCAGCAAAGGAACGTAAATGTTGGATATGACTTCAATAACAACATTGTATCTTTGAAGTATAGCGACAATAACAGCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

235

Amino Acids

25.74

Weight (kDa)

4.68

Isoelectric Point (pI)

27.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 80 - 225 9.8e-23 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42980
malus_domestica MD01G1081400.v1.1 MD01G1081500.v1.1 MD01G1081600.v1.1 MD01G1081900.v1.1
prunus_persica Prupe.2G189100_v2.0.a1
pyrus_communis pycom07g14880
rosa_chinensis RchiOBHm_Chr1g0359581
rosa_laevigata RLG00000027860
rosa_multiflora Rmu_sc0002556.1_g000022
rosa_roxburghii Rroxscaffold_4G00296910
rosa_samantha Rh1AG285600 Rh1BG251700 Rh1BG251800 Rh1DG280900 Rh1DG281000
rosa_wichuraiana Rw1G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 12
AccB7I CCANNNNNTGG 1 cut(s) 580
AccI GTMKAC 1 cut(s) 30
AclWI GGATC 1 cut(s) 561
AcsI RAATTY 2 cut(s) 102, 475
AcyI GRCGYC 1 cut(s) 311
AfaI GTAC 3 cut(s) 274, 369, 626
AfiI CCNNNNNNNGG 2 cut(s) 41, 580
AgsI TTSAA 4 cut(s) 304, 424, 661, 682
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 3 cut(s) 137, 159, 364
AluI AGCT 3 cut(s) 137, 159, 364
AlwI GGATC 1 cut(s) 561
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 1 cut(s) 97
ApoI RAATTY 2 cut(s) 102, 475
AspLEI GCGC 1 cut(s) 704
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 1 cut(s) 224
BaeI ACNNNNGTAYC 2 cut(s) 562, 595
BanI GGYRCC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 325
BccI CCATC 2 cut(s) 263, 437
BciT130I CCWGG 1 cut(s) 92
BciVI GTATCC 3 cut(s) 120, 334, 563
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 705
BfuAI ACCTGC 1 cut(s) 438
BfuI GTATCC 3 cut(s) 120, 334, 563
BglI GCCNNNNNGGC 1 cut(s) 255
Bme1390I CCNGG 2 cut(s) 57, 92
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 2 cut(s) 57, 92
BpiI GAAGAC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 580
Bse1I ACTGG 3 cut(s) 226, 455, 525
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 2 cut(s) 41, 580
BseMII CTCAG 2 cut(s) 183, 374
BseNI ACTGG 3 cut(s) 226, 455, 525
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 41, 580
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 34
Bsp143I GATC 3 cut(s) 38, 352, 553
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 2 cut(s) 184, 373
BspLI GGNNCC 1 cut(s) 14
BspMI ACCTGC 1 cut(s) 438
BspPI GGATC 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 12
BsrI ACTGG 3 cut(s) 226, 455, 525
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 38, 352, 553
BssNI GRCGYC 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 375, 594
BstDEI CTNAG 3 cut(s) 71, 192, 360
BstF5I GGATG 1 cut(s) 448
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 1 cut(s) 704
BstKTI GATC 3 cut(s) 41, 355, 556
BstMBI GATC 3 cut(s) 38, 352, 553
BstMWI GCNNNNNNNGC 4 cut(s) 156, 255, 370, 383
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 55, 90
BstSFI CTRYAG 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 325
BsuI GTATCC 3 cut(s) 120, 334, 563
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 448
BtsIMutI CAGTG 3 cut(s) 189, 303, 462
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 2 cut(s) 375, 594
CfoI GCGC 1 cut(s) 704
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 319
Csp6I GTAC 3 cut(s) 273, 368, 625
CviAII CATG 2 cut(s) 116, 337
CviJI RGCY 7 cut(s) 99, 137, 159, 174, 249, 364, 584
CviKI_1 RGCY 7 cut(s) 99, 137, 159, 174, 249, 364, 584
CviQI GTAC 3 cut(s) 273, 368, 625
DdeI CTNAG 3 cut(s) 71, 192, 360
DpnI GATC 3 cut(s) 40, 354, 555
DpnII GATC 3 cut(s) 38, 352, 553
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 409
FaeI CATG 2 cut(s) 119, 340
FaiI YATR 9 cut(s) 117, 156, 308, 338, 357, 384, 587, 654, 687
FaqI GGGAC 1 cut(s) 81
FatI CATG 2 cut(s) 115, 336
FblI GTMKAC 1 cut(s) 30
FokI GGATG 1 cut(s) 455
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 703
GsuI CTGGAG 1 cut(s) 542
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 704
Hin1I GRCGYC 1 cut(s) 311
Hin1II CATG 2 cut(s) 119, 340
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 1 cut(s) 488
HpaI GTTAAC 1 cut(s) 219
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 31, 219
Hpy188I TCNGA 3 cut(s) 291, 418, 558
Hpy8I GTNNAC 2 cut(s) 31, 219
HpyAV CCTTC 5 cut(s) 93, 140, 248, 311, 317
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 2 cut(s) 129, 386
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 255, 370, 383
HpyF3I CTNAG 3 cut(s) 71, 192, 360
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 1 cut(s) 311
Hsp92II CATG 2 cut(s) 119, 340
HspAI GCGC 1 cut(s) 702
KspAI GTTAAC 1 cut(s) 219
Kzo9I GATC 3 cut(s) 38, 352, 553
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 4 cut(s) 17, 44, 388, 461
MalI GATC 3 cut(s) 40, 354, 555
MboI GATC 3 cut(s) 38, 352, 553
MboII GAAGA 2 cut(s) 78, 325
MfeI CAATTG 1 cut(s) 228
MluCI AATT 5 cut(s) 60, 102, 228, 475, 509
MmeI TCCRAC 3 cut(s) 261, 396, 628
MnlI CCTC 3 cut(s) 123, 320, 397
MseI TTAA 2 cut(s) 165, 218
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 57, 92
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 156, 255, 370, 383
NciI CCSGG 1 cut(s) 57
NdeII GATC 3 cut(s) 38, 352, 553
NlaIII CATG 2 cut(s) 119, 340
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 2 cut(s) 17, 388
PfeI GAWTC 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 1 cut(s) 224
PsrI GAACNNNNNNTAC 2 cut(s) 340, 372
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 3 cut(s) 274, 369, 626
RsaNI GTAC 3 cut(s) 273, 368, 625
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 2 cut(s) 165, 218
Sau3AI GATC 3 cut(s) 38, 352, 553
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 57, 92
SetI ASST 7 cut(s) 46, 85, 139, 161, 366, 452, 642
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 5 cut(s) 60, 102, 228, 475, 509
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 55, 90
TaiI ACGT 1 cut(s) 642
TaqI TCGA 1 cut(s) 491
TasI AATT 5 cut(s) 60, 102, 228, 475, 509
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 2 cut(s) 165, 218
Tru9I TTAA 2 cut(s) 165, 218
TscAI CASTG 3 cut(s) 196, 303, 462
TseFI GTSAC 2 cut(s) 17, 388
Tsp45I GTSAC 2 cut(s) 17, 388
TspDTI ATGAA 2 cut(s) 159, 325
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 3 cut(s) 196, 303, 462
Van91I CCANNNNNTGG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 2 cut(s) 102, 475
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.