RchiOBHm_Chr1g0360851

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004169
Physical Location & Seq
Forward (+)
52722934 .. 52727007
4074 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
ATGGAGATTAATCTTTTCCGGCTGTGTTCCGGCCTCAAAGTCATCGGCTACTTCATGATCTTATTGGTCGCTGCCATCGTTGCTGTTTCCTACTACGCCGTCGTCGTGCTGACGTGGGGACCCGAGCTGCGAACCGGTGGCCTCCACTCTTTCTTGGCCATCTCCATTATCGTTGTCTTCCATTTTCTGCTTATAATGTTGTTGTGGTGTTACTTTATGGTAGTCTTTAGAGACCCTGGTTCTGTTCCGGAAAATTGGAAACCTCGTACACAGGAGGAAATTTTGGAGGCTGGTAGTTCTCTAACTTCGACGGAAATCACAGCACCCGAGGTTTTCAATTCCACGCAGTCTACAGATGGTCAAGAAAGAAGACCAGAAGTAGGCTATTGTAGTCGGTGCCAAAATGCCAAGCCACCACGATGCCATCATTGCTCTGTGTGTCAAAGATGTGTACTTAAGATGGATCACCATTGTGTTTGGGTGGTGAATTGCGTTGGTGCCACCAACTACAAGTCTTTTCTGCTTTTCTTGCTTTATACATTTTTGGAGACGACAATGGACACCTTAGTTTTGCTGCCGAATTTCATCAATTTTTTTTCTGAAGCCAAGAGTCATTCCACATCTCCTGGCAATCTAGCAGTTGTTTTTGTGACTTTTGTGCTTAATTTGGCCTTCTCATTGAGTCTTCTCTGTTTCGTGGTTATGCACATATCCCTTTTGTCAAGCAATACCACTTCAGTAGAGGTTCATGAGAAGAGAAGAGCAACCAGATGGAAGTATGATTTAGGCAGGAAGAAAAACTTTGAGCAGGTTTTTGGCACAAAGAAAGCACTGTGGTTCTTCCCATTGTTGTCAAAGGAGGATTTAGACAACATACCTGCACTTCGGGGCCTGGAATTTCCCACAGTATCAGATAGCGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

308

Amino Acids

34.9

Weight (kDa)

7.56

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 129 - 251 1e-34 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
Acc36I ACCTGC 2 cut(s) 799, 886
AccB1I GGYRCC 2 cut(s) 396, 497
AccI GTMKAC 1 cut(s) 350
AccIII TCCGGA 1 cut(s) 247
AclWI GGATC 1 cut(s) 471
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 3 cut(s) 279, 580, 896
AcuI CTGAAG 2 cut(s) 621, 720
AfaI GTAC 2 cut(s) 268, 453
AfiI CCNNNNNNNGG 1 cut(s) 380
AflII CTTAAG 1 cut(s) 455
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 114
AjnI CCWGG 3 cut(s) 235, 625, 891
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 225, 542
AlwI GGATC 1 cut(s) 471
Ama87I CYCGRG 2 cut(s) 122, 326
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 5 cut(s) 31, 139, 156, 669, 889
ApeKI GCWGC 3 cut(s) 71, 127, 574
ApoI RAATTY 3 cut(s) 279, 580, 896
AseI ATTAAT 1 cut(s) 9
AsiGI ACCGGT 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 119, 889
AsuHPI GGTGA 2 cut(s) 458, 496
AvaI CYCGRG 2 cut(s) 122, 326
AvaII GGWCC 1 cut(s) 119
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 2 cut(s) 396, 497
BbsI GAAGAC 3 cut(s) 169, 376, 677
BbvI GCAGC 3 cut(s) 58, 114, 561
BccI CCATC 6 cut(s) 83, 167, 350, 432, 454, 765
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 3 cut(s) 237, 627, 893
BcoDI GTCTC 2 cut(s) 225, 542
BfaI CTAG 1 cut(s) 635
BfmI CTRYAG 1 cut(s) 351
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 2 cut(s) 799, 886
BisI GCNGC 3 cut(s) 72, 128, 575
BlsI GCNGC 3 cut(s) 73, 129, 576
Bme1390I CCNGG 3 cut(s) 237, 627, 893
Bme18I GGWCC 1 cut(s) 119
BmeT110I CYCGRG 2 cut(s) 122, 326
BmgBI CACGTC 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 119, 889
BmiI GGNNCC 5 cut(s) 120, 121, 398, 499, 890
BmrFI CCNGG 3 cut(s) 237, 627, 893
BmsI GCATC 1 cut(s) 410
BpiI GAAGAC 3 cut(s) 169, 376, 677
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 235, 327
BsaWI WCCGGW 2 cut(s) 134, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 427
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 3 cut(s) 237, 627, 893
BseDI CCNNGG 2 cut(s) 235, 327
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 427
BseXI GCAGC 3 cut(s) 58, 114, 561
BsgI GTGCAG 1 cut(s) 864
BshFI GGCC 5 cut(s) 33, 141, 158, 671, 891
BshNI GGYRCC 2 cut(s) 396, 497
BshTI ACCGGT 1 cut(s) 134
BsiHKCI CYCGRG 2 cut(s) 122, 326
BsiSI CCGG 4 cut(s) 19, 30, 135, 248
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 2 cut(s) 225, 542
BsmBI CGTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 5 cut(s) 33, 141, 158, 671, 891
Bso31I GGTCTC 1 cut(s) 225
BsoBI CYCGRG 2 cut(s) 122, 326
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 2 cut(s) 57, 463
BspANI GGCC 5 cut(s) 33, 141, 158, 671, 891
BspEI TCCGGA 1 cut(s) 247
BspHI TCATGA 2 cut(s) 54, 748
BspLI GGNNCC 5 cut(s) 120, 121, 398, 499, 890
BspMI ACCTGC 2 cut(s) 799, 886
BspPI GGATC 1 cut(s) 471
BspQI GCTCTTC 1 cut(s) 754
BspT107I GGYRCC 2 cut(s) 396, 497
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 235, 327
BssMI GATC 2 cut(s) 57, 463
Bst2UI CCWGG 3 cut(s) 237, 627, 893
Bst4CI ACNGT 2 cut(s) 834, 907
Bst6I CTCTTC 2 cut(s) 749, 754
BstAFI CTTAAG 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 565
BstKTI GATC 2 cut(s) 60, 466
BstMAI GTCTC 2 cut(s) 225, 542
BstMBI GATC 2 cut(s) 57, 463
BstMWI GCNNNNNNNGC 3 cut(s) 80, 429, 529
BstNI CCWGG 3 cut(s) 237, 627, 893
BstSCI CCNGG 3 cut(s) 235, 625, 891
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 3 cut(s) 58, 114, 561
BstV2I GAAGAC 3 cut(s) 169, 376, 677
BsuRI GGCC 5 cut(s) 33, 141, 158, 671, 891
BtrI CACGTC 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 830
BveI ACCTGC 2 cut(s) 799, 886
CciI TCATGA 2 cut(s) 54, 748
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 119, 889
Csp6I GTAC 2 cut(s) 267, 452
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 2 cut(s) 55, 749
CviQI GTAC 2 cut(s) 267, 452
DdeI CTNAG 1 cut(s) 565
DpnI GATC 2 cut(s) 59, 465
DpnII GATC 2 cut(s) 57, 463
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 2 cut(s) 749, 754
EarI CTCTTC 2 cut(s) 749, 754
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 2 cut(s) 621, 720
Eco88I CYCGRG 2 cut(s) 122, 326
EcoO109I RGGNCCY 2 cut(s) 119, 889
EcoRII CCWGG 3 cut(s) 235, 625, 891
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 2 cut(s) 58, 752
FaiI YATR 9 cut(s) 56, 194, 218, 537, 704, 710, 750, 780, 875
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 54, 748
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 3 cut(s) 72, 128, 575
Fsp4HI GCNGC 3 cut(s) 72, 128, 575
FspBI CTAG 1 cut(s) 635
GluI GCNGC 3 cut(s) 72, 128, 575
HaeIII GGCC 5 cut(s) 33, 141, 158, 671, 891
HapII CCGG 4 cut(s) 19, 30, 135, 248
Hin1II CATG 2 cut(s) 58, 752
HinfI GANTC 2 cut(s) 610, 682
HpaII CCGG 4 cut(s) 19, 30, 135, 248
HphI GGTGA 2 cut(s) 458, 496
Hpy166II GTNNAC 3 cut(s) 269, 351, 452
Hpy188I TCNGA 2 cut(s) 601, 913
Hpy188III TCNNGA 4 cut(s) 55, 248, 362, 749
Hpy8I GTNNAC 3 cut(s) 269, 351, 452
Hpy99I CGWCG 3 cut(s) 104, 107, 313
HpyAV CCTTC 1 cut(s) 682
HpyCH4III ACNGT 2 cut(s) 834, 907
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 706, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 429, 529
HpyF3I CTNAG 1 cut(s) 565
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 2 cut(s) 58, 752
KflI GGGWCCC 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 57, 463
LguI GCTCTTC 1 cut(s) 754
Lsp1109I GCAGC 3 cut(s) 58, 114, 561
LweI GCATC 1 cut(s) 410
MaeI CTAG 1 cut(s) 635
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 209, 649
MalI GATC 2 cut(s) 59, 465
MboI GATC 2 cut(s) 57, 463
MboII GAAGA 7 cut(s) 169, 381, 677, 766, 771, 805, 832
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 8 cut(s) 253, 279, 337, 487, 580, 589, 664, 896
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 2 cut(s) 619, 691
MnlI CCTC 9 cut(s) 44, 152, 268, 273, 280, 322, 736, 853, 913
Mox20I TGGCCA 1 cut(s) 158
MroI TCCGGA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 158
MseI TTAA 3 cut(s) 9, 456, 663
MslI CAYNNNNRTG 2 cut(s) 418, 471
Msp20I TGGCCA 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 4 cut(s) 19, 30, 135, 248
MspR9I CCNGG 3 cut(s) 237, 627, 893
MvaI CCWGG 3 cut(s) 237, 627, 893
MwoI GCNNNNNNNGC 3 cut(s) 80, 429, 529
NdeII GATC 2 cut(s) 57, 463
NlaIII CATG 2 cut(s) 58, 752
NlaIV GGNNCC 5 cut(s) 120, 121, 398, 499, 890
NmuCI GTSAC 1 cut(s) 649
OliI CACNNNNGTG 1 cut(s) 471
PagI TCATGA 2 cut(s) 54, 748
PciSI GCTCTTC 1 cut(s) 754
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 102
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 3 cut(s) 73, 129, 576
PleI GAGTC 2 cut(s) 618, 690
PpsI GAGTC 2 cut(s) 618, 690
PpuMI RGGWCCY 1 cut(s) 119
PshBI ATTAAT 1 cut(s) 9
PsiI TTATAA 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 235, 625, 891
PspGI CCWGG 3 cut(s) 235, 625, 891
PspN4I GGNNCC 5 cut(s) 120, 121, 398, 499, 890
PspPI GGNCC 2 cut(s) 119, 889
PspPPI RGGWCCY 1 cut(s) 119
RsaI GTAC 2 cut(s) 268, 453
RsaNI GTAC 2 cut(s) 267, 452
RseI CAYNNNNRTG 2 cut(s) 418, 471
SapI GCTCTTC 1 cut(s) 754
SaqAI TTAA 3 cut(s) 9, 456, 663
SatI GCNGC 3 cut(s) 72, 128, 575
Sau3AI GATC 2 cut(s) 57, 463
Sau96I GGNCC 2 cut(s) 119, 889
SchI GAGTC 2 cut(s) 619, 691
ScrFI CCNGG 3 cut(s) 237, 627, 893
SetI ASST 8 cut(s) 116, 129, 265, 333, 566, 747, 813, 880
SfaNI GCATC 1 cut(s) 410
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 418, 471
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 8 cut(s) 253, 279, 337, 487, 580, 589, 664, 896
SspMI CTAG 1 cut(s) 635
StyD4I CCNGG 3 cut(s) 235, 625, 891
TaaI ACNGT 2 cut(s) 834, 907
TaiI ACGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 308
TasI AATT 8 cut(s) 253, 279, 337, 487, 580, 589, 664, 896
TatI WGTACW 1 cut(s) 451
Tru1I TTAA 3 cut(s) 9, 456, 663
Tru9I TTAA 3 cut(s) 9, 456, 663
TscAI CASTG 1 cut(s) 837
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 3 cut(s) 71, 127, 574
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 43, 574, 737
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 837
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 119
VspI ATTAAT 1 cut(s) 9
XapI RAATTY 3 cut(s) 279, 580, 896
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.