RchiOBHm_Chr1g0362861

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005498
Physical Location & Seq
Reverse (-)
54455267 .. 54459494
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1098 bp
ATGTTATACAAGAACATGGCAAATTGGAACCTTGATCAGGATGTTGTTCGTTGGGGTTTGCATCATCTCTTGGATTGTACCCTTTCGAATGATTTTTCTCGAAGTACTGTTACTGAATATCAATGGGACTCTAGTCAAGTAGAGTGTGTAAACGAAGGTTATGTTGAGCCTTGTAGTGTGGAGAACGATGAGGTTTTAGCTCGTGCGTTGCAAGAAGAGCTATCTAGACTTGCAAAGGAAGAGGCCGCGGGAGTTTCTAGTTACGGAGATGCGCCTTTGCAAGCGTCGATTCTTGCACAGGATTGGCTCGGTCCTTCAAGCAGACACAATGGTTCTGGGCTTGAAAATGTTCAGGATGCAGTGTTAGATTTTGGCAGGATGATGGACAACGATGATTATAGAAATCAGGAAAATGAGGGGGATGGTCCTAGGAGAAATGGAAATGGGGAAGCATATGAAAACAGTGATGGAGAGCACTCGGTGGATGGGGAAGACTTTTTGCATCCGTGGGATATAACAGATGAGTATGCTCTTGATGGTGAAGTAGGGAGAAGATTGAATCAGATGGTTCCTGTTCCTCATATTCCTAAAACGAATGAGAAAATACCCACAGTTGATGAAGAGATATCAGATCATCAGAGGCTTATTGAAAGACTGAAGTTGTATGAGTTGGTGGAGTGTAAGATCTCGGGAGATGGGAACTGTCAGTTTCGCGCTTTATCAGATCAACTATATCGTTCTTCTGAATACCATGGCCTTGTAAGAGATCAAATTATTCAACAGCTCAAGAATCACCCCGAAATATATGATGGTTATGTTCCGATGGGTTATGTTGATTACATAAAGAAAATGAGCAAGAGTGGTGAATGGGGCGACCATGTCACGTTGCAGGCTGCTGCAGATTCGTATGGTGTCAAGATATTTGTTATCACTTCTTTCAAGGATACATGCTATATTGAGATCCTTCCACATGTTTCAAAATCTAGTAGAGTTATCTGCTTGAGCTTTTGGGCTGAGGTGCACTACAATTCTATCTATCCTGAAGGAGAACTTCCTCCGCCCAGCTTACAGAAAAAGAAGCATTGGTGGAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

365

Amino Acids

41.7

Weight (kDa)

4.71

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 231 - 318 9.5e-11 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 248, 714
AciI CCGC 3 cut(s) 246, 248, 1058
AclWI GGATC 1 cut(s) 955
AcuI CTGAAG 2 cut(s) 677, 1062
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 2 cut(s) 79, 106
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 970
AgsI TTSAA 7 cut(s) 318, 344, 559, 650, 779, 940, 978
AluBI AGCT 5 cut(s) 200, 220, 784, 1005, 1065
AluI AGCT 5 cut(s) 200, 220, 784, 1005, 1065
Alw21I GWGCWC 2 cut(s) 477, 1023
Alw44I GTGCAC 1 cut(s) 1019
AlwI GGATC 1 cut(s) 955
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 2 cut(s) 243, 754
ApaLI GTGCAC 1 cut(s) 1019
ApeKI GCWGC 2 cut(s) 893, 896
Asp700I GAANNNNTTC 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 2 cut(s) 274, 716
AspS9I GGNCC 2 cut(s) 311, 425
AsuHPI GGTGA 3 cut(s) 551, 785, 875
AsuII TTCGAA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 2 cut(s) 311, 425
AvrII CCTAGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 1023
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BauI CACGAG 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 477, 1023
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 2 cut(s) 880, 883
BccI CCATC 9 cut(s) 376, 416, 461, 479, 530, 559, 689, 803, 817
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 1 cut(s) 34
BfaI CTAG 5 cut(s) 132, 225, 258, 429, 984
BfmI CTRYAG 1 cut(s) 897
BfuI GTATCC 1 cut(s) 937
BglII AGATCT 1 cut(s) 684
BisI GCNGC 3 cut(s) 246, 894, 897
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 3 cut(s) 247, 895, 898
BmcAI AGTACT 1 cut(s) 106
Bme18I GGWCC 2 cut(s) 311, 425
BmeT110I CYCGRG 1 cut(s) 688
BmgT120I GGNCC 2 cut(s) 311, 425
BmiI GGNNCC 2 cut(s) 29, 570
BmsI GCATC 4 cut(s) 70, 259, 346, 511
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 1014
Bpu14I TTCGAA 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 770, 1021
BsaJI CCNNGG 4 cut(s) 246, 428, 506, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseDI CCNNGG 4 cut(s) 246, 428, 506, 751
BseGI GGATG 6 cut(s) 46, 361, 384, 427, 490, 502
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 1005
BseSI GKGCMC 1 cut(s) 1023
BseXI GCAGC 2 cut(s) 880, 883
BseYI CCCAGC 1 cut(s) 1061
Bsh1236I CGCG 2 cut(s) 248, 714
BshFI GGCC 2 cut(s) 245, 756
BsiHKAI GWGCWC 2 cut(s) 477, 1023
BsiHKCI CYCGRG 1 cut(s) 688
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 245, 756
BsoBI CYCGRG 1 cut(s) 688
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 477, 1023
Bsp143I GATC 6 cut(s) 34, 631, 684, 724, 766, 960
Bsp19I CCATGG 1 cut(s) 751
BspACI CCGC 3 cut(s) 246, 248, 1058
BspANI GGCC 2 cut(s) 245, 756
BspCNI CTCAG 1 cut(s) 1006
BspFNI CGCG 2 cut(s) 248, 714
BspLI GGNNCC 2 cut(s) 29, 570
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 1 cut(s) 955
BspQI GCTCTTC 1 cut(s) 210
BspT104I TTCGAA 1 cut(s) 86
BssECI CCNNGG 4 cut(s) 246, 428, 506, 751
BssMI GATC 6 cut(s) 34, 631, 684, 724, 766, 960
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 428, 751
Bst2BI CACGAG 1 cut(s) 201
Bst4CI ACNGT 4 cut(s) 109, 464, 613, 704
Bst6I CTCTTC 3 cut(s) 210, 234, 615
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 282, 891
BstDEI CTNAG 1 cut(s) 1014
BstDSI CCRYGG 3 cut(s) 246, 506, 751
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 6 cut(s) 46, 361, 384, 427, 490, 502
BstFNI CGCG 2 cut(s) 248, 714
BstHHI GCGC 2 cut(s) 274, 716
BstKTI GATC 6 cut(s) 37, 634, 687, 727, 769, 963
BstMBI GATC 6 cut(s) 34, 631, 684, 724, 766, 960
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNSI RCATGY 2 cut(s) 951, 974
BstPAI GACNNNNGTC 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 1023
BstUI CGCG 2 cut(s) 248, 714
BstV1I GCAGC 2 cut(s) 880, 883
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 684, 960
BstYI RGATCY 2 cut(s) 684, 960
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 2 cut(s) 245, 756
BtgI CCRYGG 3 cut(s) 246, 506, 751
BtsCI GGATG 6 cut(s) 46, 361, 384, 427, 490, 502
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 469
Cac8I GCNNGC 2 cut(s) 282, 891
CfoI GCGC 2 cut(s) 274, 716
Cfr13I GGNCC 2 cut(s) 311, 425
Cfr42I CCGCGG 1 cut(s) 249
CseI GACGC 1 cut(s) 273
Csp6I GTAC 2 cut(s) 78, 105
CviAII CATG 5 cut(s) 16, 752, 878, 948, 971
CviQI GTAC 2 cut(s) 78, 105
DdeI CTNAG 1 cut(s) 1014
DpnI GATC 6 cut(s) 36, 633, 686, 726, 768, 962
DpnII GATC 6 cut(s) 34, 631, 684, 724, 766, 960
DraIII CACNNNGTG 1 cut(s) 481
Eam1104I CTCTTC 3 cut(s) 210, 234, 615
EarI CTCTTC 3 cut(s) 210, 234, 615
EciI GGCGGA 1 cut(s) 1047
Eco130I CCWWGG 2 cut(s) 428, 751
Eco32I GATATC 1 cut(s) 627
Eco47I GGWCC 2 cut(s) 311, 425
Eco57I CTGAAG 2 cut(s) 677, 1062
Eco88I CYCGRG 1 cut(s) 688
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRV GATATC 1 cut(s) 627
EcoT14I CCWWGG 2 cut(s) 428, 751
ErhI CCWWGG 2 cut(s) 428, 751
FaeI CATG 5 cut(s) 19, 755, 881, 951, 974
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 15, 751, 877, 947, 970
FauI CCCGC 1 cut(s) 241
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 246, 894, 897
FokI GGATG 6 cut(s) 53, 368, 391, 434, 489, 497
Fsp4HI GCNGC 3 cut(s) 246, 894, 897
FspBI CTAG 5 cut(s) 132, 225, 258, 429, 984
GlaI GCGC 2 cut(s) 273, 715
GluI GCNGC 3 cut(s) 246, 894, 897
GsaI CCCAGC 1 cut(s) 1065
HaeIII GGCC 2 cut(s) 245, 756
HgaI GACGC 1 cut(s) 273
HhaI GCGC 2 cut(s) 274, 716
Hin1II CATG 5 cut(s) 19, 755, 881, 951, 974
Hin6I GCGC 2 cut(s) 272, 714
HinP1I GCGC 2 cut(s) 272, 714
HinfI GANTC 5 cut(s) 128, 289, 559, 790, 902
HphI GGTGA 3 cut(s) 551, 785, 875
Hpy166II GTNNAC 2 cut(s) 151, 1021
Hpy188I TCNGA 6 cut(s) 564, 631, 639, 724, 745, 822
Hpy8I GTNNAC 2 cut(s) 151, 1021
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 4 cut(s) 149, 324, 974, 1037
HpyCH4III ACNGT 4 cut(s) 109, 464, 613, 704
HpyCH4IV ACGT 1 cut(s) 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 1014
HpySE526I ACGT 1 cut(s) 884
Hsp92II CATG 5 cut(s) 19, 755, 881, 951, 974
HspAI GCGC 2 cut(s) 272, 714
Ksp22I TGATCA 1 cut(s) 34
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 6 cut(s) 34, 631, 684, 724, 766, 960
LguI GCTCTTC 1 cut(s) 210
Lsp1109I GCAGC 2 cut(s) 880, 883
LweI GCATC 4 cut(s) 70, 259, 346, 511
MaeI CTAG 5 cut(s) 132, 225, 258, 429, 984
MaeII ACGT 1 cut(s) 884
MaeIII GTNAC 3 cut(s) 109, 260, 880
MalI GATC 6 cut(s) 36, 633, 686, 726, 768, 962
MboI GATC 6 cut(s) 34, 631, 684, 724, 766, 960
MboII GAAGA 6 cut(s) 227, 251, 503, 564, 632, 732
MflI RGATCY 2 cut(s) 684, 960
MhlI GDGCHC 2 cut(s) 477, 1023
MluCI AATT 3 cut(s) 22, 771, 1027
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 7 cut(s) 184, 235, 409, 588, 633, 1009, 1065
MroXI GAANNNNTTC 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 248
MvnI CGCG 2 cut(s) 248, 714
MwoI GCNNNNNNNGC 1 cut(s) 217
NcoI CCATGG 1 cut(s) 751
NdeI CATATG 1 cut(s) 454
NdeII GATC 6 cut(s) 34, 631, 684, 724, 766, 960
NlaIII CATG 5 cut(s) 19, 755, 881, 951, 974
NlaIV GGNNCC 2 cut(s) 29, 570
NmuCI GTSAC 1 cut(s) 880
NspI RCATGY 2 cut(s) 951, 974
NspV TTCGAA 1 cut(s) 86
PciI ACATGT 1 cut(s) 970
PciSI GCTCTTC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 4 cut(s) 289, 559, 790, 902
PflFI GACNNNGTC 1 cut(s) 878
PkrI GCNGC 3 cut(s) 247, 895, 898
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PscI ACATGT 1 cut(s) 970
PshAI GACNNNNGTC 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 1061
PspN4I GGNNCC 2 cut(s) 29, 570
PspPI GGNCC 2 cut(s) 311, 425
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 684, 960
PsyI GACNNNGTC 1 cut(s) 878
RsaI GTAC 2 cut(s) 79, 106
RsaNI GTAC 2 cut(s) 78, 105
SacII CCGCGG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 210
SatI GCNGC 3 cut(s) 246, 894, 897
Sau3AI GATC 6 cut(s) 34, 631, 684, 724, 766, 960
Sau96I GGNCC 2 cut(s) 311, 425
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 2 cut(s) 477, 1023
SfaNI GCATC 4 cut(s) 70, 259, 346, 511
SfcI CTRYAG 1 cut(s) 897
Sfr303I CCGCGG 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 86
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 2 cut(s) 311, 425
SmlI CTYRAG 2 cut(s) 785, 1000
SmoI CTYRAG 2 cut(s) 785, 1000
Sse9I AATT 3 cut(s) 22, 771, 1027
SsiI CCGC 3 cut(s) 246, 248, 1058
SspMI CTAG 5 cut(s) 132, 225, 258, 429, 984
StyI CCWWGG 2 cut(s) 428, 751
TaaI ACNGT 4 cut(s) 109, 464, 613, 704
TaiI ACGT 1 cut(s) 887
TaqI TCGA 3 cut(s) 86, 100, 287
TaqII GACCGA 1 cut(s) 299
TasI AATT 3 cut(s) 22, 771, 1027
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 4 cut(s) 289, 559, 790, 902
TscAI CASTG 2 cut(s) 366, 469
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 2 cut(s) 893, 896
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 2 cut(s) 471, 633
TspGWI ACGGA 2 cut(s) 279, 495
TspRI CASTG 2 cut(s) 366, 469
Tth111I GACNNNGTC 1 cut(s) 878
VneI GTGCAC 1 cut(s) 1019
VpaK11BI GGWCC 2 cut(s) 311, 425
XagI CCTNNNNNAGG 1 cut(s) 35
XbaI TCTAGA 1 cut(s) 224
XceI RCATGY 2 cut(s) 951, 974
XmaJI CCTAGG 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 5 cut(s) 132, 225, 258, 429, 984
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.