RchiOBHm_Chr1g0366511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009308
Physical Location & Seq
Forward (+)
56999717 .. 57002825
3109 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
ATGAAGACGAACAAGGCGACGGTTTTGACGTTTGCTGAGAAGTGCAAGAGTATATTGTCTTCGAATTGGCAAGGGCAGCTCAATACTATCAAGGCTGATGCTAAAGGAAGCAAGGAGGATATTTACACATCGAAGATCAAGTACATATGCAAAAGAGGGAAGCCGTACATTTGGGTACCCGAGAAGGAGTTGCATAATGTGAACTTAATTGTTGATGAACGGAGTTCTTTTTCTGTGGCCAATCCCATCCCAGGGCCGCTGGCAAGTTTACTTAGATCAATAAAGAAGTTACCAGCTCGAGTTGCTCTGACTGGGGATGTTGTACCTTTAACCGATGAAAAGGCTCAGTCTGCAACAAAAGTCCTTAGAGAAGTCATGCTATCGGAACAGACAGCAATCAGCGCGTCTAGTTATACAGTTTCAGGTGTATTAAGTTCTTCTGACCATAGTCGTACATCGCGGAGTGAAAACCTTAAGGATCTCTTGGAAGGGGATGAAAAGTACATAGTTTATAAGTTCAACCAAAGATCATGCACGTACATTGATGGCAATGGAAGCACTCATGACATTGACCAAGAAGATATAGGTGGATCTAAAGCAGATCCGTTAGCTCCTTTATCTGCTAAGCTTATTGATGGGATAAATCAGAGTGTAGCAAGACGCAGAGCCCTGATGCTTTTTTGTTTGACATACAAGAATGCCAATGCTAAGGATGCATACATGCTGTCTGTCGATCGCAAGGGATTTGACATATTGAGCAAGGTTGCCGGTCCGTTGTTGAAGGATGGCATTGGTCAGTACCAGTGGAAGGAGTTTAGATTTACTTTGAAGGAAGAGGCACGTGATGTTGAATCATTCTGCAGTCAACTGGTAGAAATGGAAGAGGATGCTGTTAAGGAGGTTTCAAGCCATAGTGGTTTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2470 Pyrid_oxidase_2

Protein Analysis

308

Amino Acids

34.08

Weight (kDa)

8.42

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
Acc65I GGTACC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 175
AccII CGCG 2 cut(s) 404, 460
AciI CCGC 2 cut(s) 257, 460
AclWI GGATC 3 cut(s) 486, 596, 598
AcoI YGGCCR 1 cut(s) 237
AcvI CACGTG 1 cut(s) 842
AfaI GTAC 8 cut(s) 143, 167, 177, 324, 454, 503, 539, 800
AfiI CCNNNNNNNGG 3 cut(s) 251, 252, 808
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 5 cut(s) 520, 781, 829, 851, 906
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 79, 296, 611, 628
AluI AGCT 4 cut(s) 79, 296, 611, 628
AlwI GGATC 3 cut(s) 486, 596, 598
Ama87I CYCGRG 2 cut(s) 179, 297
AoxI GGCC 2 cut(s) 237, 254
ApeKI GCWGC 1 cut(s) 76
Asp718I GGTACC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 2 cut(s) 254, 770
AsuII TTCGAA 1 cut(s) 62
AvaI CYCGRG 2 cut(s) 179, 297
AvaII GGWCC 1 cut(s) 770
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 670
BarI GAAGNNNNNNTAC 4 cut(s) 43, 75, 125, 157
BbrPI CACGTG 1 cut(s) 842
BbsI GAAGAC 2 cut(s) 11, 51
BbvI GCAGC 1 cut(s) 88
BccI CCATC 4 cut(s) 254, 539, 629, 779
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 252
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 859
BfrI CTTAAG 1 cut(s) 473
BisI GCNGC 2 cut(s) 77, 257
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 2 cut(s) 78, 258
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 2 cut(s) 179, 297
BmgT120I GGNCC 2 cut(s) 254, 770
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 252
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 4 cut(s) 88, 663, 703, 877
BmuI ACTGGG 1 cut(s) 321
BoxI GACNNNNGTC 1 cut(s) 447
BpiI GAAGAC 2 cut(s) 11, 51
Bpu10I CCTNAGC 1 cut(s) 708
Bpu1102I GCTNAGC 1 cut(s) 624
Bpu14I TTCGAA 1 cut(s) 62
BsaAI YACGTR 2 cut(s) 537, 842
BsaJI CCNNGG 2 cut(s) 250, 251
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 252, 808
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 3 cut(s) 316, 802, 873
Bse3DI GCAATG 1 cut(s) 556
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 250, 251
BseGI GGATG 6 cut(s) 246, 322, 499, 718, 790, 892
BseLI CCNNNNNNNGG 3 cut(s) 251, 252, 808
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 2 cut(s) 27, 359
BseNI ACTGG 3 cut(s) 316, 802, 873
BseXI GCAGC 1 cut(s) 88
Bsh1236I CGCG 2 cut(s) 404, 460
Bsh1285I CGRYCG 1 cut(s) 736
BshFI GGCC 2 cut(s) 239, 256
BshNI GGYRCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 736
BsiHKCI CYCGRG 2 cut(s) 179, 297
BsiSI CCGG 1 cut(s) 768
BslI CCNNNNNNNGG 3 cut(s) 251, 252, 808
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 2 cut(s) 239, 256
BsoBI CYCGRG 2 cut(s) 179, 297
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 7 cut(s) 135, 275, 478, 527, 590, 601, 733
Bsp1720I GCTNAGC 1 cut(s) 624
BspACI CCGC 2 cut(s) 257, 460
BspANI GGCC 2 cut(s) 239, 256
BspCNI CTCAG 2 cut(s) 28, 358
BspFNI CGCG 2 cut(s) 404, 460
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 863
BspPI GGATC 3 cut(s) 486, 596, 598
BspT104I TTCGAA 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 175
BspTI CTTAAG 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 556
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 3 cut(s) 316, 802, 873
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 2 cut(s) 250, 251
BssMI GATC 7 cut(s) 135, 275, 478, 527, 590, 601, 733
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 22, 418
Bst6I CTCTTC 2 cut(s) 828, 876
BstAFI CTTAAG 1 cut(s) 473
BstBAI YACGTR 2 cut(s) 537, 842
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 6 cut(s) 36, 272, 345, 365, 624, 708
BstF5I GGATG 6 cut(s) 246, 322, 499, 718, 790, 892
BstFNI CGCG 2 cut(s) 404, 460
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 7 cut(s) 138, 278, 481, 530, 593, 604, 736
BstMBI GATC 7 cut(s) 135, 275, 478, 527, 590, 601, 733
BstMCI CGRYCG 1 cut(s) 736
BstMWI GCNNNNNNNGC 6 cut(s) 76, 302, 350, 401, 555, 713
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 724
BstPAI GACNNNNGTC 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 859
BstUI CGCG 2 cut(s) 404, 460
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 2 cut(s) 11, 51
BstX2I RGATCY 3 cut(s) 478, 590, 601
BstYI RGATCY 3 cut(s) 478, 590, 601
BsuRI GGCC 2 cut(s) 239, 256
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 6 cut(s) 246, 322, 499, 718, 790, 892
BtsIMutI CAGTG 1 cut(s) 809
Cac8I GCNNGC 1 cut(s) 261
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 2 cut(s) 254, 770
CpoI CGGWCCG 1 cut(s) 770
CseI GACGC 2 cut(s) 393, 669
Csp6I GTAC 8 cut(s) 142, 166, 176, 323, 453, 502, 538, 799
CspI CGGWCCG 1 cut(s) 770
CviAII CATG 5 cut(s) 376, 531, 563, 721, 924
CviQI GTAC 8 cut(s) 142, 166, 176, 323, 453, 502, 538, 799
DdeI CTNAG 6 cut(s) 36, 272, 345, 365, 624, 708
DpnI GATC 7 cut(s) 137, 277, 480, 529, 592, 603, 735
DpnII GATC 7 cut(s) 135, 275, 478, 527, 590, 601, 733
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 828, 876
EarI CTCTTC 2 cut(s) 828, 876
Eco24I GRGCYC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 770
Eco72I CACGTG 1 cut(s) 842
Eco88I CYCGRG 2 cut(s) 179, 297
EcoRII CCWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 670
FaeI CATG 5 cut(s) 379, 534, 566, 724, 927
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 5 cut(s) 375, 530, 562, 720, 923
FauNDI CATATG 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 77, 257
FokI GGATG 6 cut(s) 233, 329, 506, 725, 797, 899
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 2 cut(s) 77, 257
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 403
GluI GCNGC 2 cut(s) 77, 257
HaeIII GGCC 2 cut(s) 239, 256
HapII CCGG 1 cut(s) 768
HgaI GACGC 2 cut(s) 393, 669
HhaI GCGC 1 cut(s) 404
Hin1II CATG 5 cut(s) 379, 534, 566, 724, 927
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HincII GTYRAC 1 cut(s) 866
HindII GTYRAC 1 cut(s) 866
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 1 cut(s) 851
HpaII CCGG 1 cut(s) 768
Hpy166II GTNNAC 3 cut(s) 202, 269, 866
Hpy188I TCNGA 4 cut(s) 309, 385, 442, 648
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 3 cut(s) 202, 269, 866
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 5 cut(s) 178, 482, 775, 802, 823
HpyCH4III ACNGT 2 cut(s) 22, 418
HpyCH4IV ACGT 3 cut(s) 29, 536, 841
HpyCH4V TGCA 7 cut(s) 45, 150, 193, 353, 534, 716, 861
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 302, 350, 401, 555, 713
HpyF3I CTNAG 6 cut(s) 36, 272, 345, 365, 624, 708
HpySE526I ACGT 3 cut(s) 29, 536, 841
Hsp92II CATG 5 cut(s) 379, 534, 566, 724, 927
HspAI GCGC 1 cut(s) 402
KpnI GGTACC 1 cut(s) 179
Kzo9I GATC 7 cut(s) 135, 275, 478, 527, 590, 601, 733
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 4 cut(s) 88, 663, 703, 877
MaeI CTAG 1 cut(s) 408
MaeII ACGT 3 cut(s) 29, 536, 841
MaeIII GTNAC 1 cut(s) 288
MalI GATC 7 cut(s) 137, 277, 480, 529, 592, 603, 735
MboI GATC 7 cut(s) 135, 275, 478, 527, 590, 601, 733
MboII GAAGA 7 cut(s) 16, 51, 145, 429, 590, 845, 893
MflI RGATCY 3 cut(s) 478, 590, 601
MhlI GDGCHC 1 cut(s) 670
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 2 cut(s) 64, 207
MluNI TGGCCA 1 cut(s) 239
MnlI CCTC 5 cut(s) 109, 149, 829, 877, 892
Mox20I TGGCCA 1 cut(s) 239
Mph1103I ATGCAT 1 cut(s) 718
MscI TGGCCA 1 cut(s) 239
MseI TTAA 5 cut(s) 206, 329, 431, 474, 894
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 259
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 1 cut(s) 768
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 2 cut(s) 404, 460
MwoI GCNNNNNNNGC 6 cut(s) 76, 302, 350, 401, 555, 713
NdeI CATATG 1 cut(s) 146
NdeII GATC 7 cut(s) 135, 275, 478, 527, 590, 601, 733
NlaIII CATG 5 cut(s) 379, 534, 566, 724, 927
NlaIV GGNNCC 1 cut(s) 177
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 1 cut(s) 724
NspV TTCGAA 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 297
PagI TCATGA 1 cut(s) 562
PasI CCCWGGG 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 26
PctI GAATGC 1 cut(s) 703
PfeI GAWTC 1 cut(s) 851
PkrI GCNGC 2 cut(s) 78, 258
Ple19I CGATCG 1 cut(s) 736
PmaCI CACGTG 1 cut(s) 842
PmlI CACGTG 1 cut(s) 842
Ppu21I YACGTR 2 cut(s) 537, 842
PshAI GACNNNNGTC 1 cut(s) 447
PsiI TTATAA 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 250
PspCI CACGTG 1 cut(s) 842
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 254, 770
PspXI VCTCGAGB 1 cut(s) 297
PstI CTGCAG 1 cut(s) 863
PsuI RGATCY 3 cut(s) 478, 590, 601
PvuI CGATCG 1 cut(s) 736
RsaI GTAC 8 cut(s) 143, 167, 177, 324, 454, 503, 539, 800
RsaNI GTAC 8 cut(s) 142, 166, 176, 323, 453, 502, 538, 799
Rsr2I CGGWCCG 1 cut(s) 770
RsrII CGGWCCG 1 cut(s) 770
SaqAI TTAA 5 cut(s) 206, 329, 431, 474, 894
SatI GCNGC 2 cut(s) 77, 257
Sau3AI GATC 7 cut(s) 135, 275, 478, 527, 590, 601, 733
Sau96I GGNCC 2 cut(s) 254, 770
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 4 cut(s) 88, 663, 703, 877
SfcI CTRYAG 1 cut(s) 859
Sfr274I CTCGAG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 1 cut(s) 770
SlaI CTCGAG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 297, 473
SmoI CTYRAG 2 cut(s) 297, 473
Sse9I AATT 2 cut(s) 64, 207
SsiI CCGC 2 cut(s) 257, 460
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 22, 418
TaiI ACGT 3 cut(s) 32, 539, 844
TaqI TCGA 4 cut(s) 62, 131, 298, 732
TasI AATT 2 cut(s) 64, 207
TatI WGTACW 2 cut(s) 141, 501
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 1 cut(s) 851
Tru1I TTAA 5 cut(s) 206, 329, 431, 474, 894
Tru9I TTAA 5 cut(s) 206, 329, 431, 474, 894
TscAI CASTG 1 cut(s) 809
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 4 cut(s) 17, 231, 351, 510
TspGWI ACGGA 3 cut(s) 235, 594, 762
TspRI CASTG 1 cut(s) 809
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 770
XceI RCATGY 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 297
XspI CTAG 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.