RchiOBHm_Chr1g0366541

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007025
Physical Location & Seq
Forward (+)
57019271 .. 57021057
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1104 bp
ATGGTTTTCTCATCCATTCCCGGCTATCTGGATCCACCCAACTGGCAGCAACAGCAATCCACTCATCATCATCAACAACAAGGAGGTGGCACGGATCAGAATCCCCATCTTCTTCCACCGCCACCACCACCTTCCGGAGGACCTGGAGATGCTGGTAACGGCGGAGCAGGCACGATTAGACCTGGATCGATGTCTGATCTTGCCAGACAGGCCAAGTTGCCGCAGCCCGAGACAGCCCTAAAATGCCCTCGATGCGAATCCACAAACACCAAATTTTGCTACTTCAACAATTACAGCTTGACGCAGCCGCGCCACTTCTGCAAGACCTGTCGGCGCTACTGGACCCGAGGAGGAGCGCTGAGAAGTGTGCCGGTCGGAGGAGGCTGCAGAAGGAACAAAAGGAGCAAAAGGTCAAAGTCACCAGCGTCGGCATCAGCAGCAGATCATCATCATCAGCGCCAAGGCGGAGCTGGTTCGAGCTCCAGCACAGTTTCCAACTCCAACAGCTGCAGTACTAGTGAAAATATCTTAGGCCATTTGGCTCCTCCACCACATCAGTTTCCCTTTCTGCCCTCTTTACATCATCTAAGTGATTATAGTTCCGGCGGCTTAAGTTTCGGGGGGATTCAACAACCTTCTGGTGTTGAATTCCATAGTCAGAATATTGGTGCTAGTGGAAATAGTGGTGGTGTTGGGTCTATCTTGTCAACTGGGATGGCTGAGCATTGGAGATCATCACTTCAGCATCATCAAGTTCAACAAGGCCAGCAATTTCCTTTCTTGGCTAATTTGGAGCCACCAAGTAGTCATGGCTTATACCAGTTTGACGATAATCAAAATAATGCTCACGATACAGCAAGCTATGGAAAGGGAGCTGGTCAGCTCCTTTCTAAGCCATTAGTGGATTCAAGCATTGGGGCTACTCAGGTTGCTAATGTGAAAATGGAAGAAAGCCAAGCATTGAATATGTCAAGAAATTTTTTGGGTAGTCTTGGAAATGATCATCATCAGCAATACTGGGGTAGTACTACTGCTGCTGGTGGCATTAATAATGCTTGGACTGATCTTTCAGGTTTCACTTCTTCTACCAGTCATCTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

367

Amino Acids

39.09

Weight (kDa)

8.84

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 79 - 134 4.2e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1102
AccII CGCG 1 cut(s) 310
AccIII TCCGGA 1 cut(s) 134
AciI CCGC 6 cut(s) 119, 162, 221, 308, 465, 606
AclWI GGATC 4 cut(s) 26, 39, 102, 193
AcsI RAATTY 3 cut(s) 272, 647, 976
AcuI CTGAAG 1 cut(s) 725
AfaI GTAC 2 cut(s) 514, 1027
AfeI AGCGCT 1 cut(s) 357
AfiI CCNNNNNNNGG 3 cut(s) 134, 137, 377
AflII CTTAAG 1 cut(s) 610
AgsI TTSAA 6 cut(s) 286, 629, 647, 758, 909, 964
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 2 cut(s) 142, 181
AluBI AGCT 7 cut(s) 297, 470, 480, 507, 861, 875, 883
AluI AGCT 7 cut(s) 297, 470, 480, 507, 861, 875, 883
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 4 cut(s) 26, 39, 102, 193
Ama87I CYCGRG 2 cut(s) 227, 345
Aor13HI TCCGGA 1 cut(s) 134
Aor51HI AGCGCT 1 cut(s) 357
AoxI GGCC 3 cut(s) 210, 532, 763
ApeKI GCWGC 7 cut(s) 46, 223, 304, 384, 437, 507, 1034
ApoI RAATTY 3 cut(s) 272, 647, 976
AseI ATTAAT 1 cut(s) 1047
AspLEI GCGC 4 cut(s) 312, 336, 358, 459
AspS9I GGNCC 2 cut(s) 140, 342
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 411
AvaI CYCGRG 2 cut(s) 227, 345
AvaII GGWCC 2 cut(s) 140, 342
BamHI GGATCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 7 cut(s) 58, 235, 316, 371, 449, 494, 1021
BccI CCATC 2 cut(s) 114, 709
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 2 cut(s) 144, 183
BclI TGATCA 1 cut(s) 1000
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 224
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 2 cut(s) 516, 672
BfmI CTRYAG 2 cut(s) 385, 508
BfoI RGCGCY 3 cut(s) 337, 359, 460
BfrI CTTAAG 1 cut(s) 610
BglI GCCNNNNNGGC 1 cut(s) 209
BlpI GCTNAGC 1 cut(s) 720
BmcAI AGTACT 2 cut(s) 514, 1027
Bme1390I CCNGG 3 cut(s) 21, 144, 183
Bme18I GGWCC 2 cut(s) 140, 342
BmeT110I CYCGRG 2 cut(s) 227, 345
BmgT120I GGNCC 2 cut(s) 140, 342
BmiI GGNNCC 4 cut(s) 33, 344, 543, 795
BmrFI CCNGG 3 cut(s) 21, 144, 183
BmrI ACTGGG 2 cut(s) 720, 1027
BmsI GCATC 4 cut(s) 139, 242, 440, 754
BmuI ACTGGG 2 cut(s) 720, 1027
BpmI CTGGAG 2 cut(s) 165, 466
Bpu1102I GCTNAGC 1 cut(s) 720
BpuMI CCSGG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 188
BsaBI GATNNNNATC 4 cut(s) 99, 256, 447, 1005
BsaJI CCNNGG 2 cut(s) 346, 460
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 137, 377
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 6 cut(s) 47, 344, 715, 820, 1022, 1089
Bse8I GATNNNNATC 4 cut(s) 99, 256, 447, 1005
BseAI TCCGGA 1 cut(s) 134
BseBI CCWGG 2 cut(s) 144, 183
BseCI ATCGAT 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 346, 460
BseGI GGATG 2 cut(s) 11, 720
BseJI GATNNNNATC 4 cut(s) 99, 256, 447, 1005
BseLI CCNNNNNNNGG 3 cut(s) 134, 137, 377
BseMII CTCAG 3 cut(s) 350, 711, 938
BseNI ACTGG 6 cut(s) 47, 344, 715, 820, 1022, 1089
BseRI GAGGAG 4 cut(s) 363, 366, 393, 534
BseXI GCAGC 7 cut(s) 58, 235, 316, 371, 449, 494, 1021
Bsh1236I CGCG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 3 cut(s) 212, 534, 765
BshVI ATCGAT 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 482
BsiHKCI CYCGRG 2 cut(s) 227, 345
BsiSI CCGG 4 cut(s) 21, 135, 371, 603
BslI CCNNNNNNNGG 3 cut(s) 134, 137, 377
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 3 cut(s) 212, 534, 765
BsoBI CYCGRG 2 cut(s) 227, 345
Bsp1286I GDGCHC 1 cut(s) 482
Bsp13I TCCGGA 1 cut(s) 134
Bsp143I GATC 8 cut(s) 31, 94, 185, 196, 442, 731, 1000, 1063
Bsp1720I GCTNAGC 1 cut(s) 720
BspACI CCGC 6 cut(s) 119, 162, 221, 308, 465, 606
BspANI GGCC 3 cut(s) 212, 534, 765
BspCNI CTCAG 3 cut(s) 351, 712, 937
BspDI ATCGAT 1 cut(s) 188
BspEI TCCGGA 1 cut(s) 134
BspFNI CGCG 1 cut(s) 310
BspLI GGNNCC 4 cut(s) 33, 344, 543, 795
BspMAI CTGCAG 2 cut(s) 389, 512
BspPI GGATC 4 cut(s) 26, 39, 102, 193
BspTI CTTAAG 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 6 cut(s) 47, 344, 715, 820, 1022, 1089
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 346, 460
BssMI GATC 8 cut(s) 31, 94, 185, 196, 442, 731, 1000, 1063
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 2 cut(s) 144, 183
Bst4CI ACNGT 1 cut(s) 490
BstAFI CTTAAG 1 cut(s) 610
BstC8I GCNNGC 3 cut(s) 169, 767, 859
BstDEI CTNAG 6 cut(s) 359, 529, 587, 720, 891, 924
BstENI CCTNNNNNAGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 11, 720
BstFNI CGCG 1 cut(s) 310
BstH2I RGCGCY 3 cut(s) 337, 359, 460
BstHHI GCGC 4 cut(s) 312, 336, 358, 459
BstKTI GATC 8 cut(s) 34, 97, 188, 199, 445, 734, 1003, 1066
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 8 cut(s) 31, 94, 185, 196, 442, 731, 1000, 1063
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 6 cut(s) 52, 168, 209, 252, 318, 437
BstNI CCWGG 2 cut(s) 144, 183
BstSCI CCNGG 3 cut(s) 19, 142, 181
BstSFI CTRYAG 2 cut(s) 385, 508
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 7 cut(s) 58, 235, 316, 371, 449, 494, 1021
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 188
BsuRI GGCC 3 cut(s) 212, 534, 765
BsuTUI ATCGAT 1 cut(s) 188
BtsCI GGATG 2 cut(s) 11, 720
Cac8I GCNNGC 3 cut(s) 169, 767, 859
CfoI GCGC 4 cut(s) 312, 336, 358, 459
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 140, 342
ClaI ATCGAT 1 cut(s) 188
CseI GACGC 2 cut(s) 310, 414
Csp6I GTAC 2 cut(s) 513, 1026
CviAII CATG 1 cut(s) 809
CviQI GTAC 2 cut(s) 513, 1026
DdeI CTNAG 6 cut(s) 359, 529, 587, 720, 891, 924
DpnI GATC 8 cut(s) 33, 96, 187, 198, 444, 733, 1002, 1065
DpnII GATC 8 cut(s) 31, 94, 185, 196, 442, 731, 1000, 1063
EciI GGCGGA 2 cut(s) 177, 480
Ecl136II GAGCTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 482
Eco47I GGWCC 2 cut(s) 140, 342
Eco47III AGCGCT 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 725
Eco88I CYCGRG 2 cut(s) 227, 345
EcoICRI GAGCTC 1 cut(s) 480
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 142, 181
EcoT14I CCWWGG 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 1 cut(s) 812
FaiI YATR 7 cut(s) 597, 654, 810, 817, 864, 968, 1102
FatI CATG 1 cut(s) 808
FbaI TGATCA 1 cut(s) 1000
FokI GGATG 1 cut(s) 727
FriOI GRGCYC 1 cut(s) 482
FspBI CTAG 2 cut(s) 516, 672
GlaI GCGC 4 cut(s) 311, 335, 357, 458
GsuI CTGGAG 2 cut(s) 165, 466
HaeII RGCGCY 3 cut(s) 337, 359, 460
HaeIII GGCC 3 cut(s) 212, 534, 765
HapII CCGG 4 cut(s) 21, 135, 371, 603
HgaI GACGC 2 cut(s) 310, 414
HhaI GCGC 4 cut(s) 312, 336, 358, 459
Hin1II CATG 1 cut(s) 812
Hin6I GCGC 4 cut(s) 310, 334, 356, 457
HinP1I GCGC 4 cut(s) 310, 334, 356, 457
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HinfI GANTC 4 cut(s) 100, 257, 625, 905
HpaII CCGG 4 cut(s) 21, 135, 371, 603
HphI GGTGA 1 cut(s) 411
Hpy166II GTNNAC 1 cut(s) 708
Hpy188I TCNGA 4 cut(s) 99, 196, 377, 660
Hpy188III TCNNGA 4 cut(s) 29, 135, 848, 972
Hpy8I GTNNAC 1 cut(s) 708
Hpy99I CGWCG 1 cut(s) 430
HpyAV CCTTC 3 cut(s) 141, 384, 645
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4V TGCA 3 cut(s) 321, 387, 510
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 168, 209, 252, 318, 437
HpyF3I CTNAG 6 cut(s) 359, 529, 587, 720, 891, 924
Hsp92II CATG 1 cut(s) 812
HspAI GCGC 4 cut(s) 310, 334, 356, 457
Kpn2I TCCGGA 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 1000
Kzo9I GATC 8 cut(s) 31, 94, 185, 196, 442, 731, 1000, 1063
LmnI GCTCC 9 cut(s) 164, 353, 402, 467, 485, 547, 793, 872, 888
Lsp1109I GCAGC 7 cut(s) 58, 235, 316, 371, 449, 494, 1021
LweI GCATC 4 cut(s) 139, 242, 440, 754
MaeI CTAG 2 cut(s) 516, 672
MaeIII GTNAC 2 cut(s) 155, 417
MalI GATC 8 cut(s) 33, 96, 187, 198, 444, 733, 1002, 1065
MboI GATC 8 cut(s) 31, 94, 185, 196, 442, 731, 1000, 1063
MboII GAAGA 4 cut(s) 101, 104, 959, 1074
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 6 cut(s) 272, 289, 647, 770, 787, 976
MmeI TCCRAC 3 cut(s) 355, 519, 525
MnlI CCTC 9 cut(s) 77, 131, 258, 341, 344, 371, 374, 555, 583
MroI TCCGGA 1 cut(s) 134
MseI TTAA 2 cut(s) 611, 1047
MslI CAYNNNNRTG 1 cut(s) 588
MspA1I CMGCKG 1 cut(s) 507
MspCI CTTAAG 1 cut(s) 610
MspI CCGG 4 cut(s) 21, 135, 371, 603
MspR9I CCNGG 3 cut(s) 21, 144, 183
MvaI CCWGG 2 cut(s) 144, 183
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 6 cut(s) 52, 168, 209, 252, 318, 437
NciI CCSGG 1 cut(s) 21
NdeII GATC 8 cut(s) 31, 94, 185, 196, 442, 731, 1000, 1063
NlaIII CATG 1 cut(s) 812
NlaIV GGNNCC 4 cut(s) 33, 344, 543, 795
NmuCI GTSAC 1 cut(s) 417
PfeI GAWTC 4 cut(s) 100, 257, 625, 905
PpuMI RGGWCCY 1 cut(s) 140
PshBI ATTAAT 1 cut(s) 1047
PsiI TTATAA 1 cut(s) 1102
Psp124BI GAGCTC 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 142, 181
PspGI CCWGG 2 cut(s) 142, 181
PspN4I GGNNCC 4 cut(s) 33, 344, 543, 795
PspPI GGNCC 2 cut(s) 140, 342
PspPPI RGGWCCY 1 cut(s) 140
PstI CTGCAG 2 cut(s) 389, 512
PsuI RGATCY 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 507
RsaI GTAC 2 cut(s) 514, 1027
RsaNI GTAC 2 cut(s) 513, 1026
RseI CAYNNNNRTG 1 cut(s) 588
SacI GAGCTC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 611, 1047
Sau3AI GATC 8 cut(s) 31, 94, 185, 196, 442, 731, 1000, 1063
Sau96I GGNCC 2 cut(s) 140, 342
ScaI AGTACT 2 cut(s) 514, 1027
ScrFI CCNGG 3 cut(s) 21, 144, 183
SduI GDGCHC 1 cut(s) 482
SfaNI GCATC 4 cut(s) 139, 242, 440, 754
SfcI CTRYAG 2 cut(s) 385, 508
SinI GGWCC 2 cut(s) 140, 342
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 6 cut(s) 272, 289, 647, 770, 787, 976
SsiI CCGC 6 cut(s) 119, 162, 221, 308, 465, 606
SspI AATATT 1 cut(s) 664
SspMI CTAG 2 cut(s) 516, 672
SstI GAGCTC 1 cut(s) 482
StyD4I CCNGG 3 cut(s) 19, 142, 181
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 1 cut(s) 490
TaqI TCGA 3 cut(s) 188, 250, 476
TasI AATT 6 cut(s) 272, 289, 647, 770, 787, 976
TatI WGTACW 2 cut(s) 512, 1025
TauI GCSGC 3 cut(s) 223, 310, 609
TfiI GAWTC 4 cut(s) 100, 257, 625, 905
Tru1I TTAA 2 cut(s) 611, 1047
Tru9I TTAA 2 cut(s) 611, 1047
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 7 cut(s) 46, 223, 304, 384, 437, 507, 1034
Tsp45I GTSAC 1 cut(s) 417
TspGWI ACGGA 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 610
VpaK11BI GGWCC 2 cut(s) 140, 342
VspI ATTAAT 1 cut(s) 1047
XagI CCTNNNNNAGG 1 cut(s) 135
XapI RAATTY 3 cut(s) 272, 647, 976
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XspI CTAG 2 cut(s) 516, 672
ZrmI AGTACT 2 cut(s) 514, 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.