Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Forward (+)

58006137 .. 58009382

Gene Structure 3246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGGAGGTACAGCCCAGAGTACTACAGTCCTCCGAGGAGAGGCTACGGCGGCGGCGGTGGTGGCCGGGGAAGAAGCCCGCCGAGGAAGCGCAGGGAGCAGAATAACGGAAGCCTTTTGGTCCGGAACATTCCTCTGGATTGCAGGCCGGAAGAGCTGAGGGTTCCCTTTGAGAGATTTGGGCTTGTTCGGGATGTCTACATCCCCAAGGATTACTATACTGGGGAACCTCGGGGATTTGCATTCGTGCAATTTGTGGATTCTTATGAAGCTGCAGAGGCTCAGTATCATATGAATGGGAAAATTTTTGCTGGGAGGGAGATATCTGTGGTTCTTGCTGCAGAGACAAGGAAAAGACCAGAGGAGATGCGCCAAAGAACTAGGGTCAGAGGGCCATCATCAGGCTATGGGGACAGAAGATCATCTCATTATGGACGTTCTCGTTCTCGTTCACGCTCTCCACACTATCCATCAGGTTCAAGAAGTCGGTACCGCTCAAGGTCTTATTCTCCTGCTCCAAGACGACGAGGTGAATCTGTTTCGCCAGTTAGAAGGCGTGGTGACCACCCAAGGTCACCTCGTGACCATCCACGTTCACCACTTGACCACCCAAGGTCATCAAGGGATTCTCCCCTTGAGAGAGGTGGTGATCATGATCGAAGGCCATATTCTCCAGGTTATGACAATGGTGCTGGGCAAGCTGAAAATGGAGAAGGGTATGACAAGAAATCGAGGTATGATGAGGAGATTGAACCACGAGGCAATTGGAGATCTCCTGATAAAGCATCAAGATCACCATCTGGTTCTAGGTCCAGATCTGCTGAGTTATCACCTAGGCGCAGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

282

Amino Acids

32.38

Weight (kDa)

10.81

Isoelectric Point (pI)

106.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	39 - 108	7.4e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	489
AccBSI	CCGCTC	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	5 cut(s)	51, 54, 57, 80, 493
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	581
AfaI	GTAC	3 cut(s)	11, 23, 491
AfiI	CCNNNNNNNGG	2 cut(s)	41, 401
AgsI	TTSAA	2 cut(s)	480, 752
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	3 cut(s)	157, 272, 701
AluI	AGCT	3 cut(s)	157, 272, 701
Alw26I	GTCTC	1 cut(s)	338
Ama87I	CYCGRG	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	4 cut(s)	64, 146, 392, 662
ApeKI	GCWGC	3 cut(s)	272, 338, 840
ApoI	RAATTY	1 cut(s)	303
Asp718I	GGTACC	1 cut(s)	489
AspA2I	CCTAGG	1 cut(s)	833
AspLEI	GCGC	3 cut(s)	93, 372, 840
AspS9I	GGNCC	3 cut(s)	121, 392, 810
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	7 cut(s)	542, 567, 572, 588, 659, 786, 822
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	2 cut(s)	121, 810
AvrII	CCTAGG	1 cut(s)	833
BanI	GGYRCC	1 cut(s)	489
BauI	CACGAG	2 cut(s)	579, 756
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	259, 325
BccI	CCATC	4 cut(s)	403, 478, 594, 805
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	3 cut(s)	381, 807, 834
BfmI	CTRYAG	3 cut(s)	25, 273, 339
BglII	AGATCT	2 cut(s)	770, 815
BisI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
BlnI	CCTAGG	1 cut(s)	833
BlsI	GCNGC	5 cut(s)	53, 56, 274, 340, 842
BmcAI	AGTACT	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	68, 675
Bme18I	GGWCC	2 cut(s)	121, 810
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	3 cut(s)	121, 392, 810
BmiI	GGNNCC	3 cut(s)	165, 228, 491
BmrFI	CCNGG	2 cut(s)	68, 675
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	357, 794
BmuI	ACTGGG	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	2 cut(s)	481, 656
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	2 cut(s)	654, 796
BsaJI	CCNNGG	8 cut(s)	35, 67, 83, 207, 230, 569, 611, 833
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 401
Bse1I	ACTGG	2 cut(s)	226, 545
Bse8I	GATNNNNATC	2 cut(s)	654, 796
BseAI	TCCGGA	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	8 cut(s)	35, 67, 83, 207, 230, 569, 611, 833
BseGI	GGATG	3 cut(s)	199, 201, 586
BseJI	GATNNNNATC	2 cut(s)	654, 796
BseLI	CCNNNNNNNGG	2 cut(s)	41, 401
BseMII	CTCAG	3 cut(s)	149, 296, 813
BseNI	ACTGG	2 cut(s)	226, 545
BseRI	GAGGAG	4 cut(s)	19, 52, 377, 758
BseXI	GCAGC	2 cut(s)	259, 325
BseYI	CCCAGC	2 cut(s)	311, 692
BshFI	GGCC	4 cut(s)	66, 148, 394, 664
BshNI	GGYRCC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	67, 124, 149
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	41, 401
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	66, 148, 394, 664
BsoBI	CYCGRG	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
BspACI	CCGC	5 cut(s)	51, 54, 57, 80, 493
BspANI	GGCC	4 cut(s)	66, 148, 394, 664
BspCNI	CTCAG	3 cut(s)	150, 295, 814
BspEI	TCCGGA	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	3 cut(s)	165, 228, 491
BspMAI	CTGCAG	2 cut(s)	277, 343
BspQI	GCTCTTC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	489
BsrBI	CCGCTC	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	226, 545
BssECI	CCNNGG	8 cut(s)	35, 67, 83, 207, 230, 569, 611, 833
BssMI	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
BssSI	CACGAG	2 cut(s)	579, 756
BssT1I	CCWWGG	4 cut(s)	207, 569, 611, 833
Bst2BI	CACGAG	2 cut(s)	579, 756
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	80, 146, 699
BstDEI	CTNAG	3 cut(s)	158, 282, 822
BstEII	GGTNACC	2 cut(s)	560, 573
BstF5I	GGATG	3 cut(s)	199, 201, 586
BstHHI	GCGC	3 cut(s)	93, 372, 840
BstKTI	GATC	6 cut(s)	422, 652, 658, 773, 794, 818
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 63, 88, 97, 154, 278, 698
BstNI	CCWGG	1 cut(s)	675
BstPI	GGTNACC	2 cut(s)	560, 573
BstSCI	CCNGG	2 cut(s)	66, 673
BstSFI	CTRYAG	3 cut(s)	25, 273, 339
BstV1I	GCAGC	2 cut(s)	259, 325
BstX2I	RGATCY	2 cut(s)	770, 815
BstYI	RGATCY	2 cut(s)	770, 815
BsuRI	GGCC	4 cut(s)	66, 148, 394, 664
BtsCI	GGATG	3 cut(s)	199, 201, 586
Cac8I	GCNNGC	3 cut(s)	80, 146, 699
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	3 cut(s)	93, 372, 840
Cfr13I	GGNCC	3 cut(s)	121, 392, 810
Csp6I	GTAC	3 cut(s)	10, 22, 490
CviAII	CATG	1 cut(s)	653
CviQI	GTAC	3 cut(s)	10, 22, 490
DdeI	CTNAG	3 cut(s)	158, 282, 822
DpnI	GATC	6 cut(s)	421, 651, 657, 772, 793, 817
DpnII	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
DraIII	CACNNNGTG	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	4 cut(s)	207, 569, 611, 833
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	121, 810
Eco88I	CYCGRG	1 cut(s)	231
Eco91I	GGTNACC	2 cut(s)	560, 573
EcoO65I	GGTNACC	2 cut(s)	560, 573
EcoRII	CCWGG	1 cut(s)	673
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	4 cut(s)	207, 569, 611, 833
ErhI	CCWWGG	4 cut(s)	207, 569, 611, 833
FaeI	CATG	1 cut(s)	656
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	1 cut(s)	652
FauI	CCCGC	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
FokI	GGATG	3 cut(s)	188, 206, 573
Fsp4HI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
FspBI	CTAG	3 cut(s)	381, 807, 834
GlaI	GCGC	3 cut(s)	92, 371, 839
GluI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
GsaI	CCCAGC	2 cut(s)	315, 696
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	4 cut(s)	66, 148, 394, 664
HapII	CCGG	3 cut(s)	67, 124, 149
HhaI	GCGC	3 cut(s)	93, 372, 840
Hin1II	CATG	1 cut(s)	656
Hin6I	GCGC	3 cut(s)	91, 370, 838
HinP1I	GCGC	3 cut(s)	91, 370, 838
HinfI	GANTC	3 cut(s)	260, 533, 626
HpaII	CCGG	3 cut(s)	67, 124, 149
HphI	GGTGA	7 cut(s)	542, 567, 572, 588, 659, 786, 822
Hpy166II	GTNNAC	3 cut(s)	199, 452, 596
Hpy188I	TCNGA	2 cut(s)	36, 389
Hpy188III	TCNNGA	9 cut(s)	124, 137, 191, 480, 581, 653, 776, 789, 813
Hpy8I	GTNNAC	3 cut(s)	199, 452, 596
Hpy99I	CGWCG	1 cut(s)	528
HpyAV	CCTTC	3 cut(s)	546, 654, 707
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	2 cut(s)	436, 592
HpyCH4V	TGCA	5 cut(s)	144, 242, 250, 275, 341
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 63, 88, 97, 154, 278, 698
HpyF3I	CTNAG	3 cut(s)	158, 282, 822
HpySE526I	ACGT	2 cut(s)	436, 592
Hsp92II	CATG	1 cut(s)	656
HspAI	GCGC	3 cut(s)	91, 370, 838
Kpn2I	TCCGGA	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	97, 520
Lsp1109I	GCAGC	2 cut(s)	259, 325
LweI	GCATC	2 cut(s)	357, 794
MaeI	CTAG	3 cut(s)	381, 807, 834
MaeII	ACGT	2 cut(s)	436, 592
MaeIII	GTNAC	3 cut(s)	560, 573, 581
MalI	GATC	6 cut(s)	421, 651, 657, 772, 793, 817
MbiI	CCGCTC	1 cut(s)	495
MboI	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
MboII	GAAGA	3 cut(s)	84, 164, 429
MfeI	CAATTG	1 cut(s)	763
MflI	RGATCY	2 cut(s)	770, 815
MluCI	AATT	3 cut(s)	251, 303, 763
MroI	TCCGGA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	3 cut(s)	67, 124, 149
MspR9I	CCNGG	2 cut(s)	68, 675
MunI	CAATTG	1 cut(s)	763
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	7 cut(s)	51, 63, 88, 97, 154, 278, 698
NciI	CCSGG	1 cut(s)	68
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
NlaIII	CATG	1 cut(s)	656
NlaIV	GGNNCC	3 cut(s)	165, 228, 491
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	3 cut(s)	560, 573, 581
PagI	TCATGA	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	260, 533, 626
PkrI	GCNGC	5 cut(s)	53, 56, 274, 340, 842
Psp6I	CCWGG	1 cut(s)	673
PspEI	GGTNACC	2 cut(s)	560, 573
PspFI	CCCAGC	2 cut(s)	311, 692
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	3 cut(s)	165, 228, 491
PspPI	GGNCC	3 cut(s)	121, 392, 810
PstI	CTGCAG	2 cut(s)	277, 343
PsuI	RGATCY	2 cut(s)	770, 815
RsaI	GTAC	3 cut(s)	11, 23, 491
RsaNI	GTAC	3 cut(s)	10, 22, 490
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	147
SatI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
Sau3AI	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
Sau96I	GGNCC	3 cut(s)	121, 392, 810
ScaI	AGTACT	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	68, 675
SfaNI	GCATC	2 cut(s)	357, 794
SfcI	CTRYAG	3 cut(s)	25, 273, 339
SinI	GGWCC	2 cut(s)	121, 810
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	2 cut(s)	496, 635
SmoI	CTYRAG	2 cut(s)	496, 635
Sse9I	AATT	3 cut(s)	251, 303, 763
SsiI	CCGC	5 cut(s)	51, 54, 57, 80, 493
SspMI	CTAG	3 cut(s)	381, 807, 834
StyD4I	CCNGG	2 cut(s)	66, 673
StyI	CCWWGG	4 cut(s)	207, 569, 611, 833
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	2 cut(s)	439, 595
TaqI	TCGA	2 cut(s)	658, 731
TasI	AATT	3 cut(s)	251, 303, 763
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	2 cut(s)	54, 57
TfiI	GAWTC	3 cut(s)	260, 533, 626
TseFI	GTSAC	3 cut(s)	560, 573, 581
TseI	GCWGC	3 cut(s)	272, 338, 840
Tsp45I	GTSAC	3 cut(s)	560, 573, 581
TspDTI	ATGAA	2 cut(s)	282, 308
TspGWI	ACGGA	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	121, 810
XapI	RAATTY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	762
XmaJI	CCTAGG	1 cut(s)	833
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	3 cut(s)	381, 807, 834
ZrmI	AGTACT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.