Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Forward (+)

59094293 .. 59096918

Gene Structure 2626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGAAGGGACGTCAAGGAGAGCGAGTCAGACTCTACGTCAGGGGAACTGTCCTCGGCTACAAGAGGTCCAAGTCGAACCAGTACCCAAACACCTCACTGATTCAGATCGAGGGAGTGAACACCAAGGAGGAAGTTGGGTGGTACGCCGGAAAGCGATTGGCTTATATCTACAAGGCTAAGGTGAAGCAGAACGGGAGCCACTACCGCTGCATTTGGGGAAAGGTTGCTAGGCCTCATGGTAACACCGGTGTTGTTCGGGCTAAGTTCACCTCCAATTTGCCCCCCAAGTCCATGGGTGCTCGAGTGAGGGTATTCATGTATCCCTGCAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

112

Amino Acids

12.77

Weight (kDa)

10.53

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	12 - 106	8.3e-44	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	16
AciI	CCGC	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	2 cut(s)	86, 146
AgeI	ACCGGT	1 cut(s)	248
AhdI	GACNNNNNGTC	1 cut(s)	38
Alw21I	GWGCWC	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	210
AsiGI	ACCGGT	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	3 cut(s)	16, 196, 262
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	333
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
Bpu10I	CCTNAGC	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	55, 126, 294
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	55, 126, 294
BseJI	GATNNNNATC	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	235
BshTI	ACCGGT	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	150, 249
BslFI	GGGAC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	55, 126, 294
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	2 cut(s)	126, 294
Bst4CI	ACNGT	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	180, 264
BstDSI	CCRYGG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	85, 145
CspAI	ACCGGT	1 cut(s)	248
CviAII	CATG	3 cut(s)	239, 295, 319
CviJI	RGCY	6 cut(s)	60, 164, 179, 201, 235, 263
CviKI_1	RGCY	6 cut(s)	60, 164, 179, 201, 235, 263
CviQI	GTAC	2 cut(s)	85, 145
DdeI	CTNAG	2 cut(s)	180, 264
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	126, 294
Eco147I	AGGCCT	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	126, 294
ErhI	CCWWGG	2 cut(s)	126, 294
FaeI	CATG	3 cut(s)	242, 298, 322
FaiI	YATR	6 cut(s)	168, 240, 296, 320, 335, 337
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	3 cut(s)	238, 294, 318
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	2 cut(s)	150, 249
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	242, 298, 322
HinfI	GANTC	3 cut(s)	27, 33, 103
HpaII	CCGG	2 cut(s)	150, 249
HphI	GGTGA	3 cut(s)	16, 196, 262
Hpy166II	GTNNAC	2 cut(s)	121, 270
Hpy188I	TCNGA	2 cut(s)	32, 108
Hpy8I	GTNNAC	2 cut(s)	121, 270
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	2 cut(s)	13, 39
HpyCH4V	TGCA	2 cut(s)	213, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	180, 264
HpySE526I	ACGT	2 cut(s)	13, 39
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	3 cut(s)	242, 298, 322
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	4 cut(s)	28, 95, 163, 262
Lsp1109I	GCAGC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	2 cut(s)	13, 39
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	1 cut(s)	277
MlyI	GAGTC	2 cut(s)	27, 36
MnlI	CCTC	8 cut(s)	60, 65, 106, 106, 124, 246, 283, 303
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	2 cut(s)	150, 249
MwoI	GCNNNNNNNGC	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	3 cut(s)	242, 298, 322
NlaIV	GGNNCC	1 cut(s)	200
NmeAIII	GCCGAG	1 cut(s)	36
PaeR7I	CTCGAG	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	103
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	2 cut(s)	27, 35
PpsI	GAGTC	2 cut(s)	27, 35
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	303
RsaI	GTAC	2 cut(s)	86, 146
RsaNI	GTAC	2 cut(s)	85, 145
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	2 cut(s)	27, 36
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	7 cut(s)	16, 42, 71, 98, 186, 228, 275
Sfr274I	CTCGAG	1 cut(s)	303
SgrAI	CRCCGGYG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	277
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	235
StyI	CCWWGG	2 cut(s)	126, 294
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	2 cut(s)	16, 42
TaqI	TCGA	3 cut(s)	77, 111, 304
TasI	AATT	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	103
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	69
XhoI	CTCGAG	1 cut(s)	303
XspI	CTAG	1 cut(s)	231
ZraI	GACGTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.