RchiOBHm_Chr1g0372781

Acetyltransferase (GNAT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009063
Physical Location & Seq
Reverse (-)
61317737 .. 61319759
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
ATGGTGATTATTCCCCCACACATTATCATCCCCACCTCATTGGAGAAACAGCCTTCAGAGGAAGAAATGGAGGCTGCGACGCCCATGAACATAGTAGAGGGTCAGTCATGCAAGGCTATGGAGTTAAAATGGGTAAGTTCCCGAGGCAAAACCCAACTGCAAAACATGAAAACACCTTCAAAATCAAAAGCACCAGCTACACTTCAAGCGTCAGTCCCTGTGTTCATATCCACAAACCCATCTCACGTAAAACCAGATGATCTCGTTGAGCTATACAGCGCCTGCAATCTCAACGGCCACCGATTCCCGGAGTACGTGGACGGCGGAGATGGCTTCCGTGTAGTTGAAGGTATTGATGTGAACAAGCTACGTGTGGCTCTCTCACACAGTCAAGTCGTGGTCTCCGTCTTCTGCAAAGCAAATGATGTAGTTAGCAAAACTTCATCATCATTTTCGCAAAAAAATCGACAGCAGCAGAAGATTACGGAGGGTTTAGGAGAATTGTTTGAGAGGGTGGTGATGCCGGTGACACCATTTAACAGTCAATTGGTGGGTTTTGGCCGAGCTGTTTCTGATCAAGGATTGACAGCCTCCATCTACGATGTTATGGTTATTCCTTCATTGCAGGGTATGGGAATTGGCAAGATGATAGTTAAAAGAATCACAAGAATACTCACAAGTAGAGACATTTATGACATAGCAGCCCTTTGCTCAGAGAGTGAGAGCTCATTCTTCGAAGCATGTGGTTTTGGAGATGACATTCTGTGCTCCACAGCAATGATGTATACAAGGACTGCTGGTGGTTCAACTAATAATCTCGAAGAACAACGGATGGTAACACGCGCAGGTCGAAAGCTATTGTTAGTCCCACCATTTTTGAAGACCTTACCGTACTCCAAGTCCAAGACCACACAATCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

307

Amino Acids

33.59

Weight (kDa)

8.46

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 176 - 250 2e-07 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 181 - 250 6.4e-06 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 836
AccI GTMKAC 1 cut(s) 785
AccII CGCG 1 cut(s) 843
AciI CCGC 1 cut(s) 324
AcoI YGGCCR 2 cut(s) 295, 559
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 2 cut(s) 314, 893
AfiI CCNNNNNNNGG 1 cut(s) 307
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 5 cut(s) 180, 206, 347, 807, 880
AluBI AGCT 6 cut(s) 197, 271, 367, 566, 726, 856
AluI AGCT 6 cut(s) 197, 271, 367, 566, 726, 856
Alw21I GWGCWC 2 cut(s) 728, 770
Alw26I GTCTC 2 cut(s) 406, 678
AlwNI CAGNNNCTG 2 cut(s) 218, 282
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 2 cut(s) 295, 559
ApeKI GCWGC 3 cut(s) 74, 472, 701
AspLEI GCGC 2 cut(s) 281, 845
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 3 cut(s) 16, 529, 538
AsuII TTCGAA 1 cut(s) 735
AvaI CYCGRG 1 cut(s) 141
BanII GRGCYC 1 cut(s) 728
BbsI GAAGAC 2 cut(s) 400, 887
Bbv12I GWGCWC 2 cut(s) 728, 770
BbvI GCAGC 3 cut(s) 61, 484, 713
BccI CCATC 4 cut(s) 247, 323, 602, 826
BceAI ACGGC 2 cut(s) 310, 337
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BclI TGATCA 1 cut(s) 574
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 406, 678
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 836
BisI GCNGC 3 cut(s) 75, 473, 702
BlsI GCNGC 3 cut(s) 76, 474, 703
Bme1390I CCNGG 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 510
BpiI GAAGAC 2 cut(s) 400, 887
Bpu14I TTCGAA 1 cut(s) 735
BpuMI CCSGG 1 cut(s) 308
BsaAI YACGTR 3 cut(s) 247, 316, 371
BsaHI GRCGYC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 523
Bse3DI GCAATG 2 cut(s) 620, 783
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 27, 837
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 2 cut(s) 620, 783
BseMII CTCAG 1 cut(s) 726
BseXI GCAGC 3 cut(s) 61, 484, 713
Bsh1236I CGCG 1 cut(s) 843
BshFI GGCC 2 cut(s) 297, 561
BsiHKAI GWGCWC 2 cut(s) 728, 770
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 2 cut(s) 308, 524
BslFI GGGAC 2 cut(s) 200, 851
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 2 cut(s) 406, 678
BsmFI GGGAC 2 cut(s) 200, 851
BsnI GGCC 2 cut(s) 297, 561
Bso31I GGTCTC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 141
Bsp119I TTCGAA 1 cut(s) 735
Bsp1286I GDGCHC 2 cut(s) 728, 770
Bsp143I GATC 2 cut(s) 259, 574
BspACI CCGC 1 cut(s) 324
BspANI GGCC 2 cut(s) 297, 561
BspCNI CTCAG 1 cut(s) 725
BspFNI CGCG 1 cut(s) 843
BspMI ACCTGC 1 cut(s) 836
BspT104I TTCGAA 1 cut(s) 735
BspTNI GGTCTC 1 cut(s) 406
BsrDI GCAATG 2 cut(s) 620, 783
BsrFI RCCGGY 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 259, 574
BssNAI GTATAC 1 cut(s) 786
BssNI GRCGYC 1 cut(s) 80
Bst1107I GTATAC 1 cut(s) 786
Bst4CI ACNGT 3 cut(s) 389, 542, 891
BstACI GRCGYC 1 cut(s) 80
BstBAI YACGTR 3 cut(s) 247, 316, 371
BstBI TTCGAA 1 cut(s) 735
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 712
BstF5I GGATG 2 cut(s) 27, 837
BstFNI CGCG 1 cut(s) 843
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 281, 845
BstKTI GATC 2 cut(s) 262, 577
BstMAI GTCTC 2 cut(s) 406, 678
BstMBI GATC 2 cut(s) 259, 574
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 744
BstSCI CCNGG 1 cut(s) 306
BstUI CGCG 1 cut(s) 843
BstV1I GCAGC 3 cut(s) 61, 484, 713
BstV2I GAAGAC 2 cut(s) 400, 887
BstXI CCANNNNNNTGG 1 cut(s) 40
BstZ17I GTATAC 1 cut(s) 786
BsuRI GGCC 2 cut(s) 297, 561
BtsCI GGATG 2 cut(s) 27, 837
BveI ACCTGC 1 cut(s) 836
Cac8I GCNNGC 1 cut(s) 283
CaiI CAGNNNCTG 2 cut(s) 218, 282
CfoI GCGC 2 cut(s) 281, 845
Cfr10I RCCGGY 1 cut(s) 523
CseI GACGC 2 cut(s) 88, 198
Csp6I GTAC 2 cut(s) 313, 892
CspCI CAANNNNNGTGG 2 cut(s) 858, 893
CviAII CATG 4 cut(s) 85, 108, 166, 741
CviQI GTAC 2 cut(s) 313, 892
DdeI CTNAG 1 cut(s) 712
DpnI GATC 2 cut(s) 261, 576
DpnII GATC 2 cut(s) 259, 574
EaeI YGGCCR 2 cut(s) 295, 559
EciI GGCGGA 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 726
Eco24I GRGCYC 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 406
Eco53kI GAGCTC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 728
FaeI CATG 4 cut(s) 88, 111, 169, 744
FaqI GGGAC 2 cut(s) 200, 851
FatI CATG 4 cut(s) 84, 107, 165, 740
FbaI TGATCA 1 cut(s) 574
FblI GTMKAC 1 cut(s) 785
Fnu4HI GCNGC 3 cut(s) 75, 473, 702
FokI GGATG 2 cut(s) 14, 844
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 3 cut(s) 75, 473, 702
GlaI GCGC 2 cut(s) 280, 844
GluI GCNGC 3 cut(s) 75, 473, 702
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 2 cut(s) 297, 561
HapII CCGG 2 cut(s) 308, 524
HgaI GACGC 2 cut(s) 88, 198
HhaI GCGC 2 cut(s) 281, 845
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 4 cut(s) 88, 111, 169, 744
Hin6I GCGC 2 cut(s) 279, 843
HinP1I GCGC 2 cut(s) 279, 843
HinfI GANTC 2 cut(s) 303, 660
HpaII CCGG 2 cut(s) 308, 524
HphI GGTGA 3 cut(s) 16, 529, 538
Hpy166II GTNNAC 3 cut(s) 319, 361, 786
Hpy188I TCNGA 3 cut(s) 58, 574, 715
Hpy188III TCNNGA 2 cut(s) 141, 818
Hpy8I GTNNAC 3 cut(s) 319, 361, 786
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 4 cut(s) 63, 186, 341, 627
HpyCH4III ACNGT 3 cut(s) 389, 542, 891
HpyCH4IV ACGT 3 cut(s) 246, 315, 370
HpyCH4V TGCA 5 cut(s) 111, 160, 285, 414, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 1 cut(s) 712
HpySE526I ACGT 3 cut(s) 246, 315, 370
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 4 cut(s) 88, 111, 169, 744
HspAI GCGC 2 cut(s) 279, 843
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 2 cut(s) 259, 574
LmnI GCTCC 1 cut(s) 773
LpnPI CCDG 9 cut(s) 207, 231, 267, 295, 321, 537, 611, 783, 831
Lsp1109I GCAGC 3 cut(s) 61, 484, 713
LweI GCATC 1 cut(s) 510
MaeII ACGT 3 cut(s) 246, 315, 370
MaeIII GTNAC 2 cut(s) 526, 835
MalI GATC 2 cut(s) 261, 576
MboI GATC 2 cut(s) 259, 574
MboII GAAGA 6 cut(s) 74, 400, 490, 724, 833, 892
MfeI CAATTG 1 cut(s) 545
MhlI GDGCHC 2 cut(s) 728, 770
MluCI AATT 3 cut(s) 500, 545, 636
MnlI CCTC 8 cut(s) 46, 52, 64, 91, 137, 481, 504, 601
MseI TTAA 4 cut(s) 125, 537, 654, 922
MslI CAYNNNNRTG 1 cut(s) 776
MspI CCGG 2 cut(s) 308, 524
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 545
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 1 cut(s) 330
NciI CCSGG 1 cut(s) 308
NdeII GATC 2 cut(s) 259, 574
NlaIII CATG 4 cut(s) 88, 111, 169, 744
NmeAIII GCCGAG 1 cut(s) 587
NmuCI GTSAC 1 cut(s) 526
NspI RCATGY 1 cut(s) 744
NspV TTCGAA 1 cut(s) 735
PcsI WCGNNNNNNNCGW 2 cut(s) 402, 847
PfeI GAWTC 2 cut(s) 303, 660
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 3 cut(s) 76, 474, 703
Ppu21I YACGTR 3 cut(s) 247, 316, 371
Psp124BI GAGCTC 1 cut(s) 728
PstNI CAGNNNCTG 2 cut(s) 218, 282
RsaI GTAC 2 cut(s) 314, 893
RsaNI GTAC 2 cut(s) 313, 892
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 1 cut(s) 728
SaqAI TTAA 4 cut(s) 125, 537, 654, 922
SatI GCNGC 3 cut(s) 75, 473, 702
Sau3AI GATC 2 cut(s) 259, 574
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 728, 770
SfaNI GCATC 1 cut(s) 510
SfuI TTCGAA 1 cut(s) 735
SmiMI CAYNNNNRTG 1 cut(s) 776
Sse9I AATT 3 cut(s) 500, 545, 636
SsiI CCGC 1 cut(s) 324
SstI GAGCTC 1 cut(s) 728
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 389, 542, 891
TaiI ACGT 3 cut(s) 249, 318, 373
TaqI TCGA 4 cut(s) 466, 735, 819, 850
TasI AATT 3 cut(s) 500, 545, 636
TfiI GAWTC 2 cut(s) 303, 660
Tru1I TTAA 4 cut(s) 125, 537, 654, 922
Tru9I TTAA 4 cut(s) 125, 537, 654, 922
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 3 cut(s) 74, 472, 701
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 5 cut(s) 101, 182, 214, 432, 609
TspGWI ACGGA 4 cut(s) 326, 394, 500, 844
XceI RCATGY 1 cut(s) 744
XmiI GTMKAC 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.