RchiOBHm_Chr1g0372951

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003479
Physical Location & Seq
Reverse (-)
61461931 .. 61462338
408 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGAGGCCAGGATTATTTGGTTTGATGGCATGCTTATTGTTCTTGGTGGGTGTTTGGGATGTGGTTCCGGTAGCAATGGGGGACACGACACCGAGCCAGTGTAAGGAGGAGAAAAAGCTTCTCGTTGATGCGTGCAAGGCAGTTGTTACAGGAAGTGATCCCTCTGCATACTGCTGCCAACGCCTTAGGGTCACTCATGTTGAGTGTGTATGCCCCTATGTTACTCCCAAGCTTGCCAATCTGCTCAACGTCCCACGTATCATTAAGCAAATTGAAGGTTGCGGAAGGACTGTTCCTCACAACTTCAAGTGTGGAAGTATCACCACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

110

Amino Acids

11.95

Weight (kDa)

8.62

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 29 - 104 2.4e-10 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 282
AclWI GGATC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 2 cut(s) 275, 307
AjnI CCWGG 1 cut(s) 7
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
AluBI AGCT 2 cut(s) 118, 232
AluI AGCT 2 cut(s) 118, 232
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 313
AxyI CCTNAGG 1 cut(s) 185
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 9
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 97
Bse21I CCTNAGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 2 cut(s) 95, 236
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 95, 236
BsnI GGCC 1 cut(s) 7
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 1 cut(s) 97
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 292
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 31, 133, 234
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 137, 180
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 3 cut(s) 31, 133, 234
CviAII CATG 3 cut(s) 30, 197, 330
CviJI RGCY 4 cut(s) 7, 96, 118, 232
CviKI_1 RGCY 4 cut(s) 7, 96, 118, 232
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco81I CCTNAGG 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 7
FaeI CATG 3 cut(s) 33, 200, 333
FaiI YATR 6 cut(s) 31, 169, 198, 211, 219, 331
FaqI GGGAC 2 cut(s) 95, 236
FatI CATG 3 cut(s) 29, 196, 329
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 7
HapII CCGG 1 cut(s) 68
Hin1II CATG 3 cut(s) 33, 200, 333
HindIII AAGCTT 2 cut(s) 116, 230
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 269, 279
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 249, 256
HpyCH4V TGCA 2 cut(s) 135, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 180
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 2 cut(s) 249, 256
Hsp92II CATG 3 cut(s) 33, 200, 333
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 21, 81, 110, 135
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 118
MaeII ACGT 2 cut(s) 249, 256
MaeIII GTNAC 3 cut(s) 145, 190, 220
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MluCI AATT 1 cut(s) 270
MnlI CCTC 3 cut(s) 100, 172, 306
MseI TTAA 1 cut(s) 264
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 137, 180
NdeII GATC 1 cut(s) 157
NlaIII CATG 3 cut(s) 33, 200, 333
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PkrI GCNGC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 9
SetI ASST 5 cut(s) 120, 234, 252, 259, 280
SfaNI GCATC 1 cut(s) 118
SphI GCATGC 1 cut(s) 33
Sse9I AATT 1 cut(s) 270
SsiI CCGC 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 2 cut(s) 252, 259
TasI AATT 1 cut(s) 270
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 104
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 190
TspRI CASTG 1 cut(s) 104
XceI RCATGY 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.