Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013825

Physical Location & Seq

Genomic Coordinates Forward (+)

65004707 .. 65005560

Gene Structure 854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTTCTTCTTCTTCATCCACAACCACCAAACCAATCCCAGTCTTCATCACCACCGATTCCTTACACTCAATCCTCTCTCACCAAACCCTAATCGACCACTTCCACTCTTCCCTCCCCACCGTCTCCTCCTCCCTCTGCTCCCCAATCCGCCAAAGCTACGCCGTTTCGCCCACCTCCTCCCTCCTCCTCATGCCCTCCTGGTCCTCTTCCCCCTCCCTCCCCTACCTCGGAGTCAAGCTCGTCACCTACTTCCCCCTCAACTCCGCCGTCAACTTGCCCGGAATCCACGGCAGCTACGTCCTCTTCAGCTCCACCTCCGGCCAAACCCTGGCCACCATGGACGGCACTGCTCTCACTCTCTACCGCACCGCCTGCGTCTCCGGCTTGGCTTCCAGAATTCTCTCCAGAAACGACAGTGAGGTTTTGGTCATGATCGGAGCCGGTGCTCTGGCGCCGCATTTGATCAGGGCGCATCTTGCGGCGAGGCCTGGCTTGAAGAGAGTGATCATATGGAACAGGACGGAGGTGAAGGCGAGAGCATTGGCGGAGGAGATGAGGGGAAGCGTGGGAGCTGCGCCACGAATTCGGAGGTGGCGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010112 GO:0016491 GO:0016638 GO:0016639 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0055114 GO:0065007 GO:0080134 GO:1901672

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OCD_Mu_crystall

Protein Analysis

201

Amino Acids

21.64

Weight (kDa)

10.46

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OCD_Mu_crystall	PF02423	58 - 188	9.1e-23	Ornithine cyclodeaminase/mu-crystallin family
Shikimate_DH	PF01488	130 - 189	3.3e-07	Shikimate / quinate 5-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52810
fragaria_vesca	FvH4_7g30420
malus_domestica	MD07G1279900.v1.1
prunus_persica	Prupe.2G302000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378551
rosa_laevigata	RLG00000026423
rosa_multiflora	Rmu_sc0002395.1_g000001 Rmu_sc0002395.1_g000005 Rmu_sc0008712.1_g000005 Rmu_sc0008712.1_g000006 Rmu_sc0008712.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280390
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431000 Rh1BG389300 Rh1DG420500
rosa_wichuraiana	Rw1G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	7 cut(s)	151, 267, 367, 372, 458, 482, 548
AcoI	YGGCCR	2 cut(s)	322, 333
AcsI	RAATTY	2 cut(s)	399, 585
AcuI	CTGAAG	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	455
AfiI	CCNNNNNNNGG	2 cut(s)	230, 331
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	3 cut(s)	200, 330, 490
AluBI	AGCT	5 cut(s)	159, 241, 297, 312, 575
AluI	AGCT	5 cut(s)	159, 241, 297, 312, 575
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	130, 385
AoxI	GGCC	3 cut(s)	322, 333, 488
ApeKI	GCWGC	2 cut(s)	294, 575
ApoI	RAATTY	2 cut(s)	399, 585
AspLEI	GCGC	4 cut(s)	457, 475, 580, 600
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	4 cut(s)	43, 74, 238, 541
AvaII	GGWCC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	2 cut(s)	306, 562
BceAI	ACGGC	4 cut(s)	149, 254, 307, 361
BciT130I	CCWGG	3 cut(s)	202, 332, 492
BclI	TGATCA	2 cut(s)	465, 507
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	130, 385
BfoI	RGCGCY	2 cut(s)	458, 601
BisI	GCNGC	4 cut(s)	295, 458, 483, 576
BlsI	GCNGC	4 cut(s)	296, 459, 484, 577
Bme1390I	CCNGG	4 cut(s)	202, 282, 332, 492
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	442, 456
BmrFI	CCNGG	4 cut(s)	202, 282, 332, 492
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpmI	CTGGAG	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	455
BsaJI	CCNNGG	4 cut(s)	229, 289, 330, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 331
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	3 cut(s)	202, 332, 492
BseDI	CCNNGG	4 cut(s)	229, 289, 330, 339
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	230, 331
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	6 cut(s)	118, 121, 169, 176, 179, 566
BseXI	GCAGC	2 cut(s)	306, 562
BshFI	GGCC	3 cut(s)	324, 335, 490
BshNI	GGYRCC	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	4 cut(s)	282, 321, 384, 444
BslI	CCNNNNNNNGG	2 cut(s)	230, 331
BsmAI	GTCTC	2 cut(s)	130, 385
BsmBI	CGTCTC	2 cut(s)	130, 385
BsnI	GGCC	3 cut(s)	324, 335, 490
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	3 cut(s)	435, 465, 507
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	7 cut(s)	151, 267, 367, 372, 458, 482, 548
BspANI	GGCC	3 cut(s)	324, 335, 490
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	442, 456
BspT107I	GGYRCC	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	4 cut(s)	229, 289, 330, 339
BssMI	GATC	3 cut(s)	435, 465, 507
BssNI	GRCGYC	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	3 cut(s)	202, 332, 492
Bst4CI	ACNGT	2 cut(s)	124, 419
Bst6I	CTCTTC	4 cut(s)	115, 214, 311, 494
BstACI	GRCGYC	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	376
BstDSI	CCRYGG	2 cut(s)	289, 339
BstF5I	GGATG	1 cut(s)	17
BstH2I	RGCGCY	2 cut(s)	458, 601
BstHHI	GCGC	4 cut(s)	457, 475, 580, 600
BstKTI	GATC	3 cut(s)	438, 468, 510
BstMAI	GTCTC	2 cut(s)	130, 385
BstMBI	GATC	3 cut(s)	435, 465, 507
BstMWI	GCNNNNNNNGC	3 cut(s)	375, 384, 479
BstNI	CCWGG	3 cut(s)	202, 332, 492
BstSCI	CCNGG	4 cut(s)	200, 280, 330, 490
BstV1I	GCAGC	2 cut(s)	306, 562
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	324, 335, 490
BtgI	CCRYGG	2 cut(s)	289, 339
BtsCI	GGATG	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	348, 424
Cac8I	GCNNGC	1 cut(s)	376
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	4 cut(s)	457, 475, 580, 600
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	1 cut(s)	367
CviAII	CATG	3 cut(s)	193, 340, 433
DinI	GGCGCC	1 cut(s)	456
DpnI	GATC	3 cut(s)	437, 467, 509
DpnII	GATC	3 cut(s)	435, 465, 507
EaeI	YGGCCR	2 cut(s)	322, 333
Eam1104I	CTCTTC	4 cut(s)	115, 214, 311, 494
EarI	CTCTTC	4 cut(s)	115, 214, 311, 494
EciI	GGCGGA	3 cut(s)	140, 256, 563
Eco130I	CCWWGG	1 cut(s)	339
Eco147I	AGGCCT	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	292
EcoRI	GAATTC	2 cut(s)	399, 585
EcoRII	CCWGG	3 cut(s)	200, 330, 490
EcoT14I	CCWWGG	1 cut(s)	339
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	339
Esp3I	CGTCTC	2 cut(s)	130, 385
FaeI	CATG	3 cut(s)	196, 343, 436
FaiI	YATR	5 cut(s)	194, 341, 434, 512, 514
FatI	CATG	3 cut(s)	192, 339, 432
FauNDI	CATATG	1 cut(s)	512
FbaI	TGATCA	2 cut(s)	465, 507
Fnu4HI	GCNGC	4 cut(s)	295, 458, 483, 576
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	4 cut(s)	295, 458, 483, 576
GlaI	GCGC	4 cut(s)	456, 474, 579, 599
GluI	GCNGC	4 cut(s)	295, 458, 483, 576
GsuI	CTGGAG	1 cut(s)	391
HaeII	RGCGCY	2 cut(s)	458, 601
HaeIII	GGCC	3 cut(s)	324, 335, 490
HapII	CCGG	4 cut(s)	282, 321, 384, 444
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	4 cut(s)	457, 475, 580, 600
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	3 cut(s)	196, 343, 436
Hin6I	GCGC	4 cut(s)	455, 473, 578, 598
HinP1I	GCGC	4 cut(s)	455, 473, 578, 598
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	59, 234, 285
HpaII	CCGG	4 cut(s)	282, 321, 384, 444
HphI	GGTGA	4 cut(s)	43, 74, 238, 541
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	3 cut(s)	233, 440, 591
Hpy188III	TCNNGA	3 cut(s)	396, 408, 433
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	2 cut(s)	124, 419
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	375, 384, 479
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	3 cut(s)	196, 343, 436
HspAI	GCGC	4 cut(s)	455, 473, 578, 598
KasI	GGCGCC	1 cut(s)	454
Ksp22I	TGATCA	2 cut(s)	465, 507
Kzo9I	GATC	3 cut(s)	435, 465, 507
LmnI	GCTCC	4 cut(s)	146, 317, 440, 572
Lsp1109I	GCAGC	2 cut(s)	306, 562
LweI	GCATC	1 cut(s)	484
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	437, 467, 509
MboI	GATC	3 cut(s)	435, 465, 507
MboII	GAAGA	7 cut(s)	3, 6, 37, 102, 201, 298, 511
MhlI	GDGCHC	1 cut(s)	451
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	2 cut(s)	399, 585
MluNI	TGGCCA	1 cut(s)	335
Mly113I	GGCGCC	1 cut(s)	455
MlyI	GAGTC	1 cut(s)	243
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	335
MspI	CCGG	4 cut(s)	282, 321, 384, 444
MspR9I	CCNGG	4 cut(s)	202, 282, 332, 492
MvaI	CCWGG	3 cut(s)	202, 332, 492
MwoI	GCNNNNNNNGC	3 cut(s)	375, 384, 479
NarI	GGCGCC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	512
NdeII	GATC	3 cut(s)	435, 465, 507
NlaIII	CATG	3 cut(s)	196, 343, 436
NlaIV	GGNNCC	2 cut(s)	442, 456
NmuCI	GTSAC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	432
PceI	AGGCCT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	59, 285
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	4 cut(s)	296, 459, 484, 577
PleI	GAGTC	1 cut(s)	242
PluTI	GGCGCC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	200, 330, 490
PspGI	CCWGG	3 cut(s)	200, 330, 490
PspN4I	GGNNCC	2 cut(s)	442, 456
PspPI	GGNCC	1 cut(s)	204
SatI	GCNGC	4 cut(s)	295, 458, 483, 576
Sau3AI	GATC	3 cut(s)	435, 465, 507
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	4 cut(s)	202, 282, 332, 492
SduI	GDGCHC	1 cut(s)	451
SfaNI	GCATC	1 cut(s)	484
SfoI	GGCGCC	1 cut(s)	456
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	399, 585
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	7 cut(s)	151, 267, 367, 372, 458, 482, 548
SspDI	GGCGCC	1 cut(s)	454
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	4 cut(s)	200, 280, 330, 490
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	124, 419
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	399, 585
TauI	GCSGC	2 cut(s)	460, 485
TfiI	GAWTC	2 cut(s)	59, 285
TscAI	CASTG	2 cut(s)	355, 424
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	294, 575
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	6, 37
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	2 cut(s)	355, 424
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	2 cut(s)	399, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.