Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006947

Physical Location & Seq

Genomic Coordinates Forward (+)

67023808 .. 67025049

Gene Structure 1242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGATAGATAATAGTAGTGCTGTAAAGATGGAGCAGGTCCAGCTCCAGCAGGAAGATGAGCGCTCTTCCATTGAGCAAGTGGAGTTGACAGTGCCGAAAACCGATGACCCCACGTTGCCGGTGCTCACATTCCGAACGTGGGTTCTGGGTTTGGTCTCATGTGTCCTCCTCTCCTTTTTGAACCAGTTTTTCTGGTACAGGACTCAGCCGTTTACTGTGACATCCATGAGTGCACAGATTGCTGTCGTGCCAATCGAACATTTCATGGCGAGAGTGCTACCCACGCGCCATTTTTTCCAAGCTACTCGGTTTGAGTTCACCATGAATCCGGGGCCCTTTAATGTCAAGGAACATGTGTTGGGGTTTGGTTGGGCTGGAATTTTCAGAAAATACCTGGTTGAGCCAGAGAAGATGTGGTGGCCCGTTATTCTGGGTCAGGTTTCATTGTTCAGTGCTCTGCATGAGAAGAGCAAGAGGCCTAAAGGAAGCATGACTCGTACCCAGTTCTTCCTCCTAGTGATGATTGCCAGTCCCCGGCTATCTATTCACTATGCTAACATCTATCTCTTGGGTGTGTTGGATTCAACCCAATTCTATTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0015833 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0022857 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

202

Amino Acids

23.36

Weight (kDa)

7.9

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	43 - 121	1.2e-16	OPT oligopeptide transporter protein
OPT	PF03169	121 - 178	5e-11	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400 FvH4_6g48400
malus_domestica	MD10G1056600.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1
pyrus_communis	pycom10g04350
rosa_chinensis	RchiOBHm_Chr1g0381911 RchiOBHm_Chr2g0161591
rosa_laevigata	RLG00000004821
rosa_multiflora	Rmu_co7963376.1_g000001 Rmu_co8294873.1_g000001 Rmu_co8426875.1_g000001 Rmu_co8431857.1_g000001 Rmu_sc0001742.1_g000002 Rmu_sc0002400.1_g000001 Rmu_sc0008051.1_g000001
rosa_samantha	Rh1BG412500 Rh1CG427300 Rh1DG444800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccII	CGCG	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	381
AfaI	GTAC	2 cut(s)	200, 502
AfeI	AGCGCT	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	142, 537
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	184, 588
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	2 cut(s)	46, 305
AluI	AGCT	2 cut(s)	46, 305
Alw21I	GWGCWC	3 cut(s)	129, 238, 460
Alw26I	GTCTC	1 cut(s)	163
Alw44I	GTGCAC	1 cut(s)	234
Aor51HI	AGCGCT	1 cut(s)	65
AoxI	GGCC	3 cut(s)	335, 422, 479
ApaI	GGGCCC	1 cut(s)	339
ApaLI	GTGCAC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	66, 291
AspS9I	GGNCC	4 cut(s)	40, 335, 336, 423
AsuC2I	CCSGG	2 cut(s)	333, 538
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	2 cut(s)	238, 339
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	3 cut(s)	129, 238, 460
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	2 cut(s)	333, 538
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	518, 603
BfoI	RGCGCY	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	28
Bme1390I	CCNGG	3 cut(s)	333, 398, 538
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	4 cut(s)	40, 335, 336, 423
BmiI	GGNNCC	2 cut(s)	336, 337
BmrFI	CCNGG	3 cut(s)	333, 398, 538
BmrI	ACTGGG	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	499
BpmI	CTGGAG	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	333, 538
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	332, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 537
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	3 cut(s)	187, 505, 531
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	332, 536
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	142, 537
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	3 cut(s)	187, 505, 531
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	2 cut(s)	238, 339
Bsh1236I	CGCG	1 cut(s)	289
BshFI	GGCC	3 cut(s)	337, 424, 481
BsiHKAI	GWGCWC	3 cut(s)	129, 238, 460
BsiSI	CCGG	3 cut(s)	122, 332, 538
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	2 cut(s)	142, 537
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	3 cut(s)	337, 424, 481
Bso31I	GGTCTC	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	335
Bsp1286I	GDGCHC	4 cut(s)	129, 238, 339, 460
BspANI	GGCC	3 cut(s)	337, 424, 481
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	336, 337
BspMI	ACCTGC	1 cut(s)	28
BspQI	GCTCTTC	2 cut(s)	73, 464
BspTNI	GGTCTC	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	187, 505, 531
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	332, 536
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	94, 220
Bst6I	CTCTTC	2 cut(s)	73, 464
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	1 cut(s)	289
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	2 cut(s)	66, 291
BstMAI	GTCTC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 242, 286
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	3 cut(s)	331, 396, 536
BstSLI	GKGCMC	2 cut(s)	238, 339
BstUI	CGCG	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	337, 424, 481
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	2 cut(s)	99, 460
BveI	ACCTGC	1 cut(s)	28
CfoI	GCGC	2 cut(s)	66, 291
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	40, 335, 336, 423
CsiI	ACCWGGT	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	199, 501
CviAII	CATG	7 cut(s)	162, 229, 268, 325, 356, 464, 493
CviJI	RGCY	9 cut(s)	46, 211, 305, 337, 377, 406, 424, 481, 541
CviKI_1	RGCY	9 cut(s)	46, 211, 305, 337, 377, 406, 424, 481, 541
CviQI	GTAC	2 cut(s)	199, 501
DdeI	CTNAG	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	73, 464
EarI	CTCTTC	2 cut(s)	73, 464
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	40
Eco47III	AGCGCT	1 cut(s)	65
EcoO109I	RGGNCCY	2 cut(s)	335, 336
EcoRII	CCWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	339
FaeI	CATG	7 cut(s)	165, 232, 271, 328, 359, 467, 496
FaiI	YATR	8 cut(s)	163, 230, 269, 326, 357, 465, 494, 555
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	7 cut(s)	161, 228, 267, 324, 355, 463, 492
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	518, 603
GlaI	GCGC	2 cut(s)	65, 290
GsuI	CTGGAG	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	337, 424, 481
HapII	CCGG	3 cut(s)	122, 332, 538
HhaI	GCGC	2 cut(s)	66, 291
Hin1II	CATG	7 cut(s)	165, 232, 271, 328, 359, 467, 496
Hin6I	GCGC	2 cut(s)	64, 289
HinP1I	GCGC	2 cut(s)	64, 289
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	4 cut(s)	205, 328, 496, 584
HpaII	CCGG	3 cut(s)	122, 332, 538
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	4 cut(s)	90, 216, 236, 321
Hpy188I	TCNGA	2 cut(s)	137, 389
Hpy8I	GTNNAC	4 cut(s)	90, 216, 236, 321
HpyCH4III	ACNGT	2 cut(s)	94, 220
HpyCH4IV	ACGT	2 cut(s)	116, 140
HpyCH4V	TGCA	2 cut(s)	236, 463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 242, 286
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	116, 140
Hsp92II	CATG	7 cut(s)	165, 232, 271, 328, 359, 467, 496
HspAI	GCGC	2 cut(s)	64, 289
LguI	GCTCTTC	2 cut(s)	73, 464
LmnI	GCTCC	2 cut(s)	34, 51
MabI	ACCWGGT	1 cut(s)	396
MaeI	CTAG	2 cut(s)	518, 603
MaeII	ACGT	2 cut(s)	116, 140
MaeIII	GTNAC	1 cut(s)	220
MboII	GAAGA	5 cut(s)	60, 68, 424, 481, 502
MhlI	GDGCHC	4 cut(s)	129, 238, 339, 460
MluCI	AATT	2 cut(s)	381, 593
MlyI	GAGTC	2 cut(s)	199, 490
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	4 cut(s)	179, 182, 471, 524
MseI	TTAA	2 cut(s)	342, 607
MspI	CCGG	3 cut(s)	122, 332, 538
MspR9I	CCNGG	3 cut(s)	333, 398, 538
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	43, 242, 286
NciI	CCSGG	2 cut(s)	333, 538
NlaIII	CATG	7 cut(s)	165, 232, 271, 328, 359, 467, 496
NlaIV	GGNNCC	2 cut(s)	336, 337
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	481
PciI	ACATGT	1 cut(s)	355
PciSI	GCTCTTC	2 cut(s)	73, 464
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	328, 584
PleI	GAGTC	2 cut(s)	199, 490
PpsI	GAGTC	2 cut(s)	199, 490
PscI	ACATGT	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	336, 337
PspOMI	GGGCCC	1 cut(s)	335
PspPI	GGNCC	4 cut(s)	40, 335, 336, 423
RsaI	GTAC	2 cut(s)	200, 502
RsaNI	GTAC	2 cut(s)	199, 501
SapI	GCTCTTC	2 cut(s)	73, 464
SaqAI	TTAA	2 cut(s)	342, 607
Sau96I	GGNCC	4 cut(s)	40, 335, 336, 423
SchI	GAGTC	2 cut(s)	199, 490
ScrFI	CCNGG	3 cut(s)	333, 398, 538
SduI	GDGCHC	4 cut(s)	129, 238, 339, 460
SetI	ASST	7 cut(s)	42, 48, 119, 143, 307, 399, 444
SexAI	ACCWGGT	1 cut(s)	396
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	2 cut(s)	381, 593
SseBI	AGGCCT	1 cut(s)	481
SspMI	CTAG	2 cut(s)	518, 603
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	3 cut(s)	331, 396, 536
TaaI	ACNGT	2 cut(s)	94, 220
TaiI	ACGT	2 cut(s)	119, 143
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	381, 593
TfiI	GAWTC	2 cut(s)	328, 584
Tru1I	TTAA	2 cut(s)	342, 607
Tru9I	TTAA	2 cut(s)	342, 607
TscAI	CASTG	2 cut(s)	99, 460
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	3 cut(s)	256, 341, 435
TspRI	CASTG	2 cut(s)	99, 460
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	381
XceI	RCATGY	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 414
XspI	CTAG	2 cut(s)	518, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.