RchiOBHm_Chr1g0383381

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016928
Physical Location & Seq
Forward (+)
67738503 .. 67739466
964 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGCAGATCAACATGTTCCCTTCACATGAAGAAAAGTTGGATGATGAGTTTAGCTTCGAGGGACCAGATGAAAAGCTAGAGACAGAAGCAATACAGTTTGAGTTGCCACCGGAAAGTAGCAGGAGAAGCACTTTCAGTAGCCGCACTAGCAGGGTGGATAACATATGGAAAGAGGATGTTCGACTTCAAACAGCAAGCATTCATGCTGCCCTTTCTGTCACACGCTTGGCTGCAGCTATCGCCAGTGTTGCTGCAACCAAGAGCAGCATAGACTCAGAATCAGAATCAGCGCAAGATATTGGCAATCAAGGTACTGTACTTCAATCAAGGAACAACATAGACGACATTTTTGCTTCTGCAGCAGCTCTGGTTACCACAGTTTGTGCTGAAGCTGCTGAGTCATTGGGGGCGCAGACAATCGATGTTTCTTCTGCCATTAACTCAGGCTGGGCTACCCAAACAACTGGCGACATGATCACACTCACAGCTGACGCTGCAACACGTTTAAGGGGAGTTGCAGCACTCAGAGCAAGAGCCAAGGCCGATGCGTATTTTCCAAGAACCCAAAATTTTCTTCCAGTAAAAGCAGAGCTATCTGTCGTCACTCCTTCTGGTAAGAATACATGGGTAGATTTTTCAAATACCTTTTATGTTGTAAGGAAATATAAAACACAGGTTCTTATCTGTGCAAGCAGGAAGCAAAAGATACGGCTGGGCCTCCATATATTCAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

245

Amino Acids

26.69

Weight (kDa)

5.98

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 56 - 182 5.4e-31 Auxin canalisation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 2 cut(s) 313, 318
AflIII ACRYGT 2 cut(s) 12, 500
AgsI TTSAA 4 cut(s) 188, 323, 639, 730
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 7 cut(s) 54, 76, 236, 365, 392, 488, 592
AluI AGCT 7 cut(s) 54, 76, 236, 365, 392, 488, 592
Alw26I GTCTC 1 cut(s) 74
AoxI GGCC 2 cut(s) 540, 715
ApoI RAATTY 1 cut(s) 568
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 2 cut(s) 292, 412
AspS9I GGNCC 2 cut(s) 62, 715
AvaII GGWCC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 725
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 2 cut(s) 77, 147
BfmI CTRYAG 2 cut(s) 231, 357
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 62, 715
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 1 cut(s) 535
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 537
BsaWI WCCGGW 1 cut(s) 109
Bse1I ACTGG 3 cut(s) 243, 469, 578
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 2 cut(s) 46, 181
BseMII CTCAG 4 cut(s) 288, 387, 456, 538
BseNI ACTGG 3 cut(s) 243, 469, 578
BseYI CCCAGC 2 cut(s) 447, 712
BshFI GGCC 2 cut(s) 542, 717
BshVI ATCGAT 1 cut(s) 420
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 2 cut(s) 542, 717
Bsp143I GATC 2 cut(s) 6, 474
BspACI CCGC 1 cut(s) 142
BspANI GGCC 2 cut(s) 542, 717
BspCNI CTCAG 4 cut(s) 287, 388, 455, 537
BspDI ATCGAT 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 2 cut(s) 235, 361
BsrI ACTGG 3 cut(s) 243, 469, 578
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 2 cut(s) 6, 474
BssT1I CCWWGG 1 cut(s) 537
Bst4CI ACNGT 3 cut(s) 96, 316, 379
BstC8I GCNNGC 2 cut(s) 196, 691
BstDEI CTNAG 4 cut(s) 274, 396, 442, 524
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 2 cut(s) 46, 181
BstHHI GCGC 2 cut(s) 292, 412
BstKTI GATC 2 cut(s) 9, 477
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 6, 474
BstMWI GCNNNNNNNGC 8 cut(s) 126, 147, 239, 248, 359, 392, 494, 527
BstNSI RCATGY 1 cut(s) 16
BstPI GGTNACC 1 cut(s) 370
BstSFI CTRYAG 2 cut(s) 231, 357
BstXI CCANNNNNNTGG 1 cut(s) 464
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 2 cut(s) 542, 717
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 2 cut(s) 46, 181
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 196, 691
CfoI GCGC 2 cut(s) 292, 412
Cfr13I GGNCC 2 cut(s) 62, 715
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 1 cut(s) 500
Csp6I GTAC 2 cut(s) 312, 317
CviAII CATG 5 cut(s) 13, 26, 203, 472, 624
CviQI GTAC 2 cut(s) 312, 317
DdeI CTNAG 4 cut(s) 274, 396, 442, 524
DpnI GATC 2 cut(s) 8, 476
DpnII GATC 2 cut(s) 6, 474
Eco130I CCWWGG 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 408
Eco91I GGTNACC 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 5 cut(s) 16, 29, 206, 475, 627
FaqI GGGAC 1 cut(s) 75
FatI CATG 5 cut(s) 12, 25, 202, 471, 623
FauNDI CATATG 1 cut(s) 164
FbaI TGATCA 1 cut(s) 474
FokI GGATG 2 cut(s) 53, 188
FspBI CTAG 2 cut(s) 77, 147
GlaI GCGC 2 cut(s) 291, 411
GsaI CCCAGC 2 cut(s) 451, 716
HaeIII GGCC 2 cut(s) 542, 717
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 500
HhaI GCGC 2 cut(s) 292, 412
Hin1II CATG 5 cut(s) 16, 29, 206, 475, 627
Hin6I GCGC 2 cut(s) 290, 410
HinP1I GCGC 2 cut(s) 290, 410
HinfI GANTC 4 cut(s) 272, 278, 284, 398
HpaII CCGG 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 277, 283, 527
HpyAV CCTTC 2 cut(s) 30, 618
HpyCH4III ACNGT 3 cut(s) 96, 316, 379
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 7 cut(s) 4, 233, 254, 359, 497, 518, 689
HpyF10VI GCNNNNNNNGC 8 cut(s) 126, 147, 239, 248, 359, 392, 494, 527
HpyF3I CTNAG 4 cut(s) 274, 396, 442, 524
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 5 cut(s) 16, 29, 206, 475, 627
HspAI GCGC 2 cut(s) 290, 410
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 2 cut(s) 6, 474
LweI GCATC 1 cut(s) 535
MaeI CTAG 2 cut(s) 77, 147
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 3 cut(s) 217, 370, 601
MalI GATC 2 cut(s) 8, 476
MboI GATC 2 cut(s) 6, 474
MboII GAAGA 3 cut(s) 41, 420, 566
MluCI AATT 1 cut(s) 568
MlyI GAGTC 2 cut(s) 266, 407
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 3 cut(s) 52, 166, 728
MseI TTAA 2 cut(s) 438, 506
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 198
MwoI GCNNNNNNNGC 8 cut(s) 126, 147, 239, 248, 359, 392, 494, 527
NdeI CATATG 1 cut(s) 164
NdeII GATC 2 cut(s) 6, 474
NlaIII CATG 5 cut(s) 16, 29, 206, 475, 627
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 217, 601
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PctI GAATGC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 278, 284
PleI GAGTC 2 cut(s) 266, 406
PpsI GAGTC 2 cut(s) 266, 406
PscI ACATGT 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 370
PspFI CCCAGC 2 cut(s) 447, 712
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 62, 715
PstI CTGCAG 2 cut(s) 235, 361
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 2 cut(s) 313, 318
RsaNI GTAC 2 cut(s) 312, 317
SaqAI TTAA 2 cut(s) 438, 506
Sau3AI GATC 2 cut(s) 6, 474
Sau96I GGNCC 2 cut(s) 62, 715
SchI GAGTC 2 cut(s) 266, 407
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 2 cut(s) 231, 357
SinI GGWCC 1 cut(s) 62
Sse9I AATT 1 cut(s) 568
SsiI CCGC 1 cut(s) 142
SspMI CTAG 2 cut(s) 77, 147
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 3 cut(s) 96, 316, 379
TaiI ACGT 1 cut(s) 505
TaqI TCGA 3 cut(s) 57, 181, 420
TasI AATT 1 cut(s) 568
TatI WGTACW 1 cut(s) 316
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 278, 284
Tru1I TTAA 2 cut(s) 438, 506
Tru9I TTAA 2 cut(s) 438, 506
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 217, 601
Tsp45I GTSAC 2 cut(s) 217, 601
TspDTI ATGAA 3 cut(s) 42, 84, 191
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 568
XceI RCATGY 1 cut(s) 16
XspI CTAG 2 cut(s) 77, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.