RchiOBHm_Chr1g0322731

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
10124057 .. 10124490
434 bp
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UTR
Exon/CDS
Intron
PRQ55271

Sequence Viewer

Length: 198 bp
ATGATCTTTCTTTTGAGTATAATTTTGCATATATATTGGAGGATTTTAGAGATTGCAAATCCGGCACTATTCACAATTTGGGTTGAGAAAAATGCTAGGAAGGTTGAGATGAAGCTACTGCCAAAATTTGGTGACCATCGGAGAAGTTGGCCGCCTCATGAACAGTGGCGCCGCGTGAATAGTGCAGCGCGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.92

Weight (kDa)

10.5

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 128
AccII CGCG 2 cut(s) 174, 190
AciI CCGC 2 cut(s) 152, 172
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 128
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 2 cut(s) 171, 190
AsuHPI GGTGA 1 cut(s) 143
BanI GGYRCC 1 cut(s) 168
BccI CCATC 1 cut(s) 144
BfaI CTAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 3 cut(s) 152, 172, 186
BlsI GCNGC 3 cut(s) 153, 173, 187
BmiI GGNNCC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 128
Bsh1236I CGCG 2 cut(s) 174, 190
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 128
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 152, 172
BspANI GGCC 1 cut(s) 151
BspFNI CGCG 2 cut(s) 174, 190
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 168
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 169
BstEII GGTNACC 1 cut(s) 131
BstFNI CGCG 2 cut(s) 174, 190
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 2 cut(s) 171, 190
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstPI GGTNACC 1 cut(s) 131
BstUI CGCG 2 cut(s) 174, 190
BsuRI GGCC 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 170
CciI TCATGA 1 cut(s) 157
CfoI GCGC 2 cut(s) 171, 190
CviAII CATG 1 cut(s) 158
CviJI RGCY 2 cut(s) 115, 151
CviKI_1 RGCY 2 cut(s) 115, 151
DinI GGCGCC 1 cut(s) 170
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EgeI GGCGCC 1 cut(s) 170
EheI GGCGCC 1 cut(s) 170
FaeI CATG 1 cut(s) 161
FaiI YATR 5 cut(s) 20, 30, 32, 34, 159
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 152, 172, 186
Fsp4HI GCNGC 3 cut(s) 152, 172, 186
FspBI CTAG 1 cut(s) 96
GlaI GCGC 2 cut(s) 170, 189
GluI GCNGC 3 cut(s) 152, 172, 186
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 1 cut(s) 151
HapII CCGG 1 cut(s) 62
HhaI GCGC 2 cut(s) 171, 190
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 2 cut(s) 169, 188
HinP1I GCGC 2 cut(s) 169, 188
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 28, 56, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 2 cut(s) 169, 188
KasI GGCGCC 1 cut(s) 168
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 1 cut(s) 75
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 131
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 3 cut(s) 21, 75, 125
Mly113I GGCGCC 1 cut(s) 169
MnlI CCTC 2 cut(s) 33, 165
MspI CCGG 1 cut(s) 62
MvnI CGCG 2 cut(s) 174, 190
MwoI GCNNNNNNNGC 1 cut(s) 62
NarI GGCGCC 1 cut(s) 169
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 131
PagI TCATGA 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 3 cut(s) 153, 173, 187
PluTI GGCGCC 1 cut(s) 172
PspEI GGTNACC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 170
SatI GCNGC 3 cut(s) 152, 172, 186
Sau3AI GATC 1 cut(s) 3
SetI ASST 2 cut(s) 105, 117
SfoI GGCGCC 1 cut(s) 170
SgeI CNNG 5 cut(s) 74, 108, 170, 185, 187
Sse9I AATT 3 cut(s) 21, 75, 125
SsiI CCGC 2 cut(s) 152, 172
SspDI GGCGCC 1 cut(s) 168
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 165
TasI AATT 3 cut(s) 21, 75, 125
TauI GCSGC 2 cut(s) 154, 174
TscAI CASTG 1 cut(s) 170
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 125, 174
TspRI CASTG 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 128
XapI RAATTY 1 cut(s) 125
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.