RchiOBHm_Chr5g0025251

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
19189583 .. 19189986
404 bp
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UTR
Exon/CDS
Intron
PRQ30493

Sequence Viewer

Length: 153 bp
ATGATTCTGTGGTTGAAATTTGGTGGCCGGAGGAGGAGTTGGCCGCCGCATGAACAGTGTAGCCGCGTGAATAGTGCGACGGTGAATAGTGCGGTGTCATATGTGAAGCTTGGTGAATTTTGGAGGAATTTGGAATTGTTTGTGATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.93

Weight (kDa)

10.27

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 66
AciI CCGC 4 cut(s) 44, 47, 64, 92
AcoI YGGCCR 2 cut(s) 25, 41
AcsI RAATTY 3 cut(s) 17, 116, 127
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AoxI GGCC 2 cut(s) 25, 41
ApoI RAATTY 3 cut(s) 17, 116, 127
AsuHPI GGTGA 2 cut(s) 94, 125
BisI GCNGC 3 cut(s) 44, 47, 64
BlsI GCNGC 3 cut(s) 45, 48, 65
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
BseRI GAGGAG 2 cut(s) 46, 49
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 27, 43
BsiSI CCGG 1 cut(s) 28
BsnI GGCC 2 cut(s) 27, 43
BspACI CCGC 4 cut(s) 44, 47, 64, 92
BspANI GGCC 2 cut(s) 27, 43
BspFNI CGCG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 57, 82
BstFNI CGCG 1 cut(s) 66
BstUI CGCG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 27, 43
BtsIMutI CAGTG 1 cut(s) 62
CviAII CATG 1 cut(s) 50
CviJI RGCY 4 cut(s) 27, 43, 63, 109
CviKI_1 RGCY 4 cut(s) 27, 43, 63, 109
EaeI YGGCCR 2 cut(s) 25, 41
FaeI CATG 1 cut(s) 53
FaiI YATR 3 cut(s) 51, 100, 102
FatI CATG 1 cut(s) 49
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 44, 47, 64
Fsp4HI GCNGC 3 cut(s) 44, 47, 64
GluI GCNGC 3 cut(s) 44, 47, 64
HaeIII GGCC 2 cut(s) 27, 43
HapII CCGG 1 cut(s) 28
Hin1II CATG 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 28
HphI GGTGA 2 cut(s) 94, 125
Hpy188I TCNGA 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 57, 82
Hsp92II CATG 1 cut(s) 53
LpnPI CCDG 1 cut(s) 41
MluCI AATT 4 cut(s) 17, 116, 127, 134
MnlI CCTC 3 cut(s) 24, 27, 117
MspI CCGG 1 cut(s) 28
MvnI CGCG 1 cut(s) 66
NdeI CATATG 1 cut(s) 100
NlaIII CATG 1 cut(s) 53
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 3 cut(s) 45, 48, 65
SatI GCNGC 3 cut(s) 44, 47, 64
SetI ASST 1 cut(s) 111
SgeI CNNG 5 cut(s) 40, 62, 77, 79, 122
Sse9I AATT 4 cut(s) 17, 116, 127, 134
SsiI CCGC 4 cut(s) 44, 47, 64, 92
TaaI ACNGT 2 cut(s) 57, 82
TasI AATT 4 cut(s) 17, 116, 127, 134
TauI GCSGC 3 cut(s) 46, 49, 66
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 1 cut(s) 62
XapI RAATTY 3 cut(s) 17, 116, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.