Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017411

Physical Location & Seq

Genomic Coordinates Reverse (-)

34842119 .. 34854589

Gene Structure 12471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGGTCGTTTCTCTTCCCGGTCAACCACGGCGACAATTTTGGGTCGGATAGGTCGTCCGATAGGGATCACTTCATTGAGGCTTTGAATTTGGGTCCCGAGATGTTGGATCCGGTGGCGCCCGATGACATTACTTTTCTAGCTCGAAAGTTTACTAGAGAACTTTTGGGTACTTATACATTACAAGGGGTCATTCGAACGTATCTAAATAGATGCATGTCATCAAAATCGTGTCGCAAGAGCAACCACAACTACTCCAACTCCGCATTTGGACTCGGAGACTTGTTATCTGGGAGTACAGAGCATTCCGCACGTGATCCGACTTTTTGTTGGCATTTCAGCGTGCACAGCATATTTCATCATCAGAATTGGTGGGATCCTCGAATAAGCGAACAGTCTATACAAAGGCACCTGAAGCGTGATAGAGCTGACTACACAGCCGGACTGCCCGGAATTGCCAAGGTGATGACCCTCCAATTTCGCCCGCCGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

164

Amino Acids

18.83

Weight (kDa)

8.53

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322731 RchiOBHm_Chr4g0384911 RchiOBHm_Chr5g0024771 RchiOBHm_Chr5g0025251
rosa_laevigata	RLG00000009123
rosa_multiflora	Rmu_co8108714.1_g000001 Rmu_sc0005690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051130 Rroxscaffold_3G00245460 Rroxscaffold_6G00412210 Rroxscaffold_7G00186660 Rroxscaffold_7G00203230
rosa_samantha	Rh7AG033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	118, 408
AciI	CCGC	3 cut(s)	264, 309, 485
AclWI	GGATC	6 cut(s)	75, 104, 117, 311, 371, 384
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	434
AcvI	CACGTG	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	172, 298
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	2 cut(s)	143, 428
AluI	AGCT	2 cut(s)	143, 428
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	273
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	6 cut(s)	75, 104, 117, 311, 371, 384
Ama87I	CYCGRG	1 cut(s)	98
ApaLI	GTGCAC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	2 cut(s)	20, 450
AsuHPI	GGTGA	1 cut(s)	475
AsuII	TTCGAA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	348
BamHI	GGATCC	2 cut(s)	109, 376
BanI	GGYRCC	2 cut(s)	118, 408
BbrPI	CACGTG	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	348
BceAI	ACGGC	1 cut(s)	46
BcnI	CCSGG	2 cut(s)	20, 450
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	3 cut(s)	140, 156, 493
BfoI	RGCGCY	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	20, 450
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	6 cut(s)	96, 97, 111, 120, 378, 410
BmrFI	CCNGG	2 cut(s)	20, 450
BmsI	GCATC	1 cut(s)	203
Bpu14I	TTCGAA	1 cut(s)	196
BpuMI	CCSGG	2 cut(s)	20, 450
BsaAI	YACGTR	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	28, 459
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 245, 269, 275
Bse8I	GATNNNNATC	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	28, 459
BseJI	GATNNNNATC	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	348
BshNI	GGYRCC	2 cut(s)	118, 408
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	20, 113, 441, 450
BslFI	GGGAC	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	67, 109, 316, 376
BspACI	CCGC	3 cut(s)	264, 309, 485
BspLI	GGNNCC	6 cut(s)	96, 97, 111, 120, 378, 410
BspPI	GGATC	6 cut(s)	75, 104, 117, 311, 371, 384
BspT104I	TTCGAA	1 cut(s)	196
BspT107I	GGYRCC	2 cut(s)	118, 408
BssECI	CCNNGG	2 cut(s)	28, 459
BssMI	GATC	4 cut(s)	67, 109, 316, 376
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	344, 485
BstDSI	CCRYGG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	4 cut(s)	70, 112, 319, 379
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	67, 109, 316, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 415
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	18, 448
BstSLI	GKGCMC	1 cut(s)	348
BstX2I	RGATCY	2 cut(s)	109, 376
BstYI	RGATCY	2 cut(s)	109, 376
BtgI	CCRYGG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	344, 485
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	171, 297
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	4 cut(s)	83, 143, 428, 440
CviKI_1	RGCY	4 cut(s)	83, 143, 428, 440
CviQI	GTAC	2 cut(s)	171, 297
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	4 cut(s)	69, 111, 318, 378
DpnII	GATC	4 cut(s)	67, 109, 316, 376
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	434
Eco72I	CACGTG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	1 cut(s)	220
FaiI	YATR	4 cut(s)	177, 218, 353, 401
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	492
FspBI	CTAG	3 cut(s)	140, 156, 493
GlaI	GCGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	122
HapII	CCGG	4 cut(s)	20, 113, 441, 450
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	4 cut(s)	20, 113, 441, 450
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	3 cut(s)	25, 153, 346
Hpy188I	TCNGA	5 cut(s)	49, 61, 278, 321, 366
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	3 cut(s)	25, 153, 346
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	200, 313
HpyCH4V	TGCA	2 cut(s)	216, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 415
HpySE526I	ACGT	2 cut(s)	200, 313
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	119
KasI	GGCGCC	1 cut(s)	118
KflI	GGGWCCC	1 cut(s)	95
Kzo9I	GATC	4 cut(s)	67, 109, 316, 376
LpnPI	CCDG	6 cut(s)	33, 126, 276, 425, 454, 463
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	3 cut(s)	140, 156, 493
MaeII	ACGT	2 cut(s)	200, 313
MalI	GATC	4 cut(s)	69, 111, 318, 378
MboI	GATC	4 cut(s)	67, 109, 316, 376
MboII	GAAGA	1 cut(s)	7
MflI	RGATCY	2 cut(s)	109, 376
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	5 cut(s)	37, 88, 367, 453, 476
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	4 cut(s)	27, 87, 282, 344
MnlI	CCTC	3 cut(s)	73, 390, 482
Mph1103I	ATGCAT	1 cut(s)	218
MspI	CCGG	4 cut(s)	20, 113, 441, 450
MspR9I	CCNGG	2 cut(s)	20, 450
Mva1269I	GAATGC	1 cut(s)	304
MwoI	GCNNNNNNNGC	2 cut(s)	348, 415
NarI	GGCGCC	1 cut(s)	119
NciI	CCSGG	2 cut(s)	20, 450
NdeII	GATC	4 cut(s)	67, 109, 316, 376
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	6 cut(s)	96, 97, 111, 120, 378, 410
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	267
PluTI	GGCGCC	1 cut(s)	122
PmaCI	CACGTG	1 cut(s)	314
PmlI	CACGTG	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	267
Ppu21I	YACGTR	1 cut(s)	314
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	314
PspN4I	GGNNCC	6 cut(s)	96, 97, 111, 120, 378, 410
PspPI	GGNCC	1 cut(s)	95
PspPPI	RGGWCCY	1 cut(s)	95
PsrI	GAACNNNNNNTAC	2 cut(s)	384, 416
PsuI	RGATCY	2 cut(s)	109, 376
RsaI	GTAC	2 cut(s)	172, 298
RsaNI	GTAC	2 cut(s)	171, 297
Sau3AI	GATC	4 cut(s)	67, 109, 316, 376
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	20, 450
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	8 cut(s)	8, 56, 145, 203, 316, 414, 430, 465
SfaNI	GCATC	1 cut(s)	203
SfoI	GGCGCC	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	196
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	5 cut(s)	37, 88, 367, 453, 476
SsiI	CCGC	3 cut(s)	264, 309, 485
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	3 cut(s)	140, 156, 493
StyD4I	CCNGG	2 cut(s)	18, 448
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	2 cut(s)	203, 316
TaqI	TCGA	3 cut(s)	145, 196, 382
TasI	AATT	5 cut(s)	37, 88, 367, 453, 476
TatI	WGTACW	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	64, 347
VneI	GTGCAC	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	3 cut(s)	140, 156, 493
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.