Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017411

Physical Location & Seq

Genomic Coordinates Reverse (-)

47073415 .. 47077516

Gene Structure 4102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009123

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCACGAGTACAATCTCCTCTACTGGGCCTCTGTCAGGCCCACCAGGATGAGGCTGTTTCTCTTCCCAATCAATCACAGCGACAGATTCGGGTCTGGCAGGTCGTCCGATAGGGATCTCTTGTTTGAGGCTTTGAATTCGGGTCCTGAGACAGAAATAAGAAGGTGGAGTGGAGCCTCTCCTGCTGAGATGTTGGATCTAGTGGCCAGGTCCTCTGTCTTTTTCTTCCCTGAGGTAACATGCAGTAAAGATGGAAAATTAGGGGCTTTCAAGTTTGCAGCTGCATCTTCCAATAATGATGGCGAACCTGTGGCTGTGGATGCTGATAAACTGATTCAAGGATCCATTTATCGAGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

121

Amino Acids

13.42

Weight (kDa)

5.65

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322731 RchiOBHm_Chr4g0384911 RchiOBHm_Chr5g0024771 RchiOBHm_Chr5g0025251
rosa_laevigata	RLG00000009123
rosa_multiflora	Rmu_co8108714.1_g000001 Rmu_sc0005690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051130 Rroxscaffold_3G00245460 Rroxscaffold_6G00412210 Rroxscaffold_7G00186660 Rroxscaffold_7G00203230
rosa_samantha	Rh7AG033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AclWI	GGATC	4 cut(s)	123, 204, 336, 349
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	3 cut(s)	25, 36, 51
AgsI	TTSAA	3 cut(s)	136, 271, 338
AjnI	CCWGG	2 cut(s)	44, 206
AluBI	AGCT	2 cut(s)	281, 360
AluI	AGCT	2 cut(s)	281, 360
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	4 cut(s)	123, 204, 336, 349
AoxI	GGCC	3 cut(s)	27, 38, 204
ApeKI	GCWGC	2 cut(s)	278, 281
ApoI	RAATTY	1 cut(s)	136
AspS9I	GGNCC	4 cut(s)	27, 39, 143, 210
AvaII	GGWCC	2 cut(s)	143, 210
AxyI	CCTNAGG	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	341
BauI	CACGAG	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	268, 290
BccI	CCATC	2 cut(s)	245, 293
BciT130I	CCWGG	2 cut(s)	46, 208
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	90
BisI	GCNGC	2 cut(s)	279, 282
BlsI	GCNGC	2 cut(s)	280, 283
Bme1390I	CCNGG	2 cut(s)	46, 208
Bme18I	GGWCC	2 cut(s)	143, 210
BmgT120I	GGNCC	4 cut(s)	27, 39, 143, 210
BmiI	GGNNCC	3 cut(s)	144, 175, 343
BmrFI	CCNGG	2 cut(s)	46, 208
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	2 cut(s)	293, 310
BmuI	ACTGGG	1 cut(s)	34
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 36, 51
Bse1I	ACTGG	1 cut(s)	29
Bse21I	CCTNAGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	46, 208
BseGI	GGATG	2 cut(s)	54, 325
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	25, 36, 51
BseMII	CTCAG	3 cut(s)	138, 177, 222
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	268, 290
BshFI	GGCC	3 cut(s)	29, 40, 206
BslI	CCNNNNNNNGG	3 cut(s)	25, 36, 51
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	29, 40, 206
Bsp143I	GATC	3 cut(s)	115, 196, 341
BspANI	GGCC	3 cut(s)	29, 40, 206
BspCNI	CTCAG	3 cut(s)	139, 178, 223
BspLI	GGNNCC	3 cut(s)	144, 175, 343
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	4 cut(s)	123, 204, 336, 349
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	3 cut(s)	115, 196, 341
BssSI	CACGAG	1 cut(s)	5
Bst2BI	CACGAG	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	46, 208
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	3 cut(s)	147, 186, 231
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	54, 325
BstKTI	GATC	3 cut(s)	118, 199, 344
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	115, 196, 341
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 320
BstNI	CCWGG	2 cut(s)	46, 208
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	44, 206
BstV1I	GCAGC	2 cut(s)	268, 290
BstX2I	RGATCY	3 cut(s)	115, 196, 341
BstYI	RGATCY	3 cut(s)	115, 196, 341
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	29, 40, 206
BtsCI	GGATG	2 cut(s)	54, 325
BveI	ACCTGC	1 cut(s)	90
Cfr13I	GGNCC	4 cut(s)	27, 39, 143, 210
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	240
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	147, 186, 231
DpnI	GATC	3 cut(s)	117, 198, 343
DpnII	GATC	3 cut(s)	115, 196, 341
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	143, 210
Eco81I	CCTNAGG	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoO109I	RGGNCCY	2 cut(s)	143, 210
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	44, 206
FaeI	CATG	1 cut(s)	243
FaiI	YATR	1 cut(s)	241
FatI	CATG	1 cut(s)	239
Fnu4HI	GCNGC	2 cut(s)	279, 282
FokI	GGATG	2 cut(s)	61, 332
Fsp4HI	GCNGC	2 cut(s)	279, 282
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	2 cut(s)	279, 282
HaeIII	GGCC	3 cut(s)	29, 40, 206
Hin1II	CATG	1 cut(s)	243
HinfI	GANTC	2 cut(s)	87, 334
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	146, 353
HpyAV	CCTTC	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	4, 243, 278, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 320
HpyF3I	CTNAG	3 cut(s)	147, 186, 231
Hsp92II	CATG	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	115, 196, 341
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	2 cut(s)	268, 290
LweI	GCATC	2 cut(s)	293, 310
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	117, 198, 343
MboI	GATC	3 cut(s)	115, 196, 341
MboII	GAAGA	3 cut(s)	55, 217, 279
MflI	RGATCY	3 cut(s)	115, 196, 341
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	2 cut(s)	136, 257
MluNI	TGGCCA	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	7 cut(s)	29, 40, 45, 121, 187, 223, 226
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	46, 208
MvaI	CCWGG	2 cut(s)	46, 208
MwoI	GCNNNNNNNGC	2 cut(s)	182, 320
NdeII	GATC	3 cut(s)	115, 196, 341
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	3 cut(s)	144, 175, 343
NspI	RCATGY	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	87, 334
PkrI	GCNGC	2 cut(s)	280, 283
PpuMI	RGGWCCY	2 cut(s)	143, 210
Psp5II	RGGWCCY	2 cut(s)	143, 210
Psp6I	CCWGG	2 cut(s)	44, 206
PspGI	CCWGG	2 cut(s)	44, 206
PspN4I	GGNNCC	3 cut(s)	144, 175, 343
PspPI	GGNCC	4 cut(s)	27, 39, 143, 210
PspPPI	RGGWCCY	2 cut(s)	143, 210
PsuI	RGATCY	3 cut(s)	115, 196, 341
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	47
SatI	GCNGC	2 cut(s)	279, 282
Sau3AI	GATC	3 cut(s)	115, 196, 341
Sau96I	GGNCC	4 cut(s)	27, 39, 143, 210
ScrFI	CCNGG	2 cut(s)	46, 208
SetI	ASST	7 cut(s)	104, 167, 212, 237, 283, 310, 362
SfaNI	GCATC	2 cut(s)	293, 310
SinI	GGWCC	2 cut(s)	143, 210
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	136, 257
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	44, 206
TaqI	TCGA	1 cut(s)	352
TasI	AATT	2 cut(s)	136, 257
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	87, 334
TseI	GCWGC	2 cut(s)	278, 281
VpaK11BI	GGWCC	2 cut(s)	143, 210
XagI	CCTNNNNNAGG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	136
XceI	RCATGY	1 cut(s)	243
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.