Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017411

Physical Location & Seq

Genomic Coordinates Reverse (-)

38435793 .. 38439054

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGATAAGGCCACGGACAACGGCGGCAAGCCCAATAAGTACGATGTGAGCTCTTATAATCATTACCTCGGGGCCAATCTCATGAGTGGAGCCTCTCCGGCCGAGATGTTGGATGCGGTGGCCGAGTTTACAGAGAAGTACAAGAAGGAACATCCCAACAACAAATCAGTCACTACTGTAAGTGAATCTCATTTCCTAGATCTACATGCTCAATTATCTCAGCTTCCCCTTGTTGAGAGAGCGCCCTACCAGGCCAAGGCAGAGAAGAGGAAGGCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

93

Amino Acids

10.34

Weight (kDa)

6.41

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322731 RchiOBHm_Chr4g0384911 RchiOBHm_Chr5g0024771 RchiOBHm_Chr5g0025251
rosa_laevigata	RLG00000009123
rosa_multiflora	Rmu_co8108714.1_g000001 Rmu_sc0005690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051130 Rroxscaffold_3G00245460 Rroxscaffold_6G00412210 Rroxscaffold_7G00186660 Rroxscaffold_7G00203230
rosa_samantha	Rh7AG033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
AciI	CCGC	2 cut(s)	24, 116
AcoI	YGGCCR	2 cut(s)	99, 120
AfaI	GTAC	2 cut(s)	41, 140
AfiI	CCNNNNNNNGG	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	51, 223
AluI	AGCT	2 cut(s)	51, 223
Alw21I	GWGCWC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	5 cut(s)	9, 72, 99, 120, 252
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	251
BfaI	CTAG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	73, 91
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	12, 67, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	12, 67, 255
BseGI	GGATG	2 cut(s)	118, 151
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	233
BseX3I	CGGCCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	5 cut(s)	11, 74, 101, 122, 254
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	256
BsnI	GGCC	5 cut(s)	11, 74, 101, 122, 254
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	2 cut(s)	24, 116
BspANI	GGCC	5 cut(s)	11, 74, 101, 122, 254
BspCNI	CTCAG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	73, 91
BssECI	CCNNGG	3 cut(s)	12, 67, 255
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	118, 151
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	5 cut(s)	11, 74, 101, 122, 254
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	118, 151
Cac8I	GCNNGC	1 cut(s)	29
CciI	TCATGA	1 cut(s)	81
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	40, 139
CviAII	CATG	2 cut(s)	82, 206
CviQI	GTAC	2 cut(s)	40, 139
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	2 cut(s)	99, 120
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	53
Eco52I	CGGCCG	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	85, 209
FaiI	YATR	3 cut(s)	57, 83, 207
FatI	CATG	2 cut(s)	81, 205
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	2 cut(s)	125, 138
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	5 cut(s)	11, 74, 101, 122, 254
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	85, 209
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	2 cut(s)	139, 265
HpyCH4III	ACNGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	85, 209
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	3 cut(s)	111, 236, 263
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	77, 103, 261
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	85, 209
NlaIV	GGNNCC	2 cut(s)	73, 91
NmeAIII	GCCGAG	2 cut(s)	127, 148
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	209
PagI	TCATGA	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	73, 91
PspPI	GGNCC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	2 cut(s)	41, 140
RsaNI	GTAC	2 cut(s)	40, 139
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	3 cut(s)	53, 69, 225
SfaNI	GCATC	1 cut(s)	103
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	24, 116
SspMI	CTAG	1 cut(s)	197
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	178
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	29
XceI	RCATGY	1 cut(s)	209
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.