Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8108714.1

Orthogroup ID

OG0017411

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 608

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8108714.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 569 bp

atggcgatccttgcccggacccgatccctggccaaaaccctaaacgcaaaccccaccttcttcaagaccatcaccaccttctcatttctctctcaggagccccagctcgccgccgagcccactcagccggcggcccccgaggtcccgctccctcccaacccaacctcataccccgaaaactggcgcagtccgccgtcctccgccgcgtcggctcagtctctgctccccctagggttcctccagcaatccccgagcttccaaatccagtccctctcgcaagacctggactcgcagggactgctcaacgtcttcgccgattggatgacgtcacagaagtggacgcagatgaagcagttgtttgagctctggataaggtcgctggacaagaacggcaagcccaataagcccgatgtgagttcttataatcactacctcagggccaatctcatgagcggagcctcgccggcggagatgctggatctggtggccagtatggaggaccacggcgtcgagcccaacacggcgtcgtttaatctcgtcctcaaggctatgcacggcggcaaagagtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

190

Amino Acids

20.92

Weight (kDa)

5.89

Isoelectric Point (pI)

70.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322731 RchiOBHm_Chr4g0384911 RchiOBHm_Chr5g0024771 RchiOBHm_Chr5g0025251
rosa_laevigata	RLG00000009123
rosa_multiflora	Rmu_co8108714.1_g000001 Rmu_sc0005690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051130 Rroxscaffold_3G00245460 Rroxscaffold_6G00412210 Rroxscaffold_7G00186660 Rroxscaffold_7G00203230
rosa_samantha	Rh7AG033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
AasI	GACNNNNNNGTC	1 cut(s)	506
AatII	GACGTC	1 cut(s)	329
AccBSI	CCGCTC	2 cut(s)	148, 453
AccII	CGCG	1 cut(s)	206
AciI	CCGC	9 cut(s)	111, 131, 146, 191, 201, 204, 453, 467, 558
AclWI	GGATC	2 cut(s)	18, 486
AcoI	YGGCCR	2 cut(s)	30, 486
AcyI	GRCGYC	3 cut(s)	326, 507, 524
AfiI	CCNNNNNNNGG	2 cut(s)	28, 180
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	27, 282
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	3 cut(s)	106, 255, 364
AluI	AGCT	3 cut(s)	106, 255, 364
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	18, 486
AlwNI	CAGNNNCTG	2 cut(s)	220, 298
Ama87I	CYCGRG	2 cut(s)	137, 250
AoxI	GGCC	4 cut(s)	30, 132, 438, 486
AspA2I	CCTAGG	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	5 cut(s)	18, 133, 142, 438, 499
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	64
AvaI	CYCGRG	2 cut(s)	137, 250
AvaII	GGWCC	3 cut(s)	18, 142, 499
AvrII	CCTAGG	1 cut(s)	229
AxyI	CCTNAGG	1 cut(s)	434
BalI	TGGCCA	2 cut(s)	32, 488
BanII	GRGCYC	4 cut(s)	102, 120, 366, 516
BbsI	GAAGAC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	366
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	4 cut(s)	178, 406, 520, 537
BciT130I	CCWGG	2 cut(s)	29, 284
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	230
BglI	GCCNNNNNGGC	2 cut(s)	209, 464
BisI	GCNGC	4 cut(s)	111, 132, 204, 559
BlnI	CCTAGG	1 cut(s)	229
BlsI	GCNGC	4 cut(s)	112, 133, 205, 560
Bme1390I	CCNGG	3 cut(s)	16, 29, 284
Bme18I	GGWCC	3 cut(s)	18, 142, 499
BmeT110I	CYCGRG	2 cut(s)	137, 250
BmgT120I	GGNCC	5 cut(s)	18, 133, 142, 438, 499
BmiI	GGNNCC	6 cut(s)	20, 99, 135, 144, 236, 457
BmrFI	CCNGG	3 cut(s)	16, 29, 284
BmsI	GCATC	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	16
BsaHI	GRCGYC	3 cut(s)	326, 507, 524
BsaJI	CCNNGG	4 cut(s)	27, 138, 229, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 180
Bse118I	RCCGGY	2 cut(s)	127, 463
Bse1I	ACTGG	3 cut(s)	185, 265, 489
Bse21I	CCTNAGG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	29, 284
BseDI	CCNNGG	4 cut(s)	27, 138, 229, 502
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	28, 180
BseMII	CTCAG	4 cut(s)	107, 137, 227, 448
BseNI	ACTGG	3 cut(s)	185, 265, 489
BseYI	CCCAGC	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	4 cut(s)	32, 134, 440, 488
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	2 cut(s)	137, 250
BsiSI	CCGG	3 cut(s)	16, 128, 464
BslFI	GGGAC	3 cut(s)	128, 253, 309
BslI	CCNNNNNNNGG	2 cut(s)	28, 180
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	3 cut(s)	128, 253, 309
BsnI	GGCC	4 cut(s)	32, 134, 440, 488
BsoBI	CYCGRG	2 cut(s)	137, 250
Bsp1286I	GDGCHC	4 cut(s)	102, 120, 366, 516
Bsp143I	GATC	3 cut(s)	6, 23, 478
BspACI	CCGC	9 cut(s)	111, 131, 146, 191, 201, 204, 453, 467, 558
BspANI	GGCC	4 cut(s)	32, 134, 440, 488
BspCNI	CTCAG	4 cut(s)	106, 136, 226, 447
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	6 cut(s)	20, 99, 135, 144, 236, 457
BspPI	GGATC	2 cut(s)	18, 486
BsrBI	CCGCTC	2 cut(s)	148, 453
BsrFI	RCCGGY	2 cut(s)	127, 463
BsrI	ACTGG	3 cut(s)	185, 265, 489
BssAI	RCCGGY	2 cut(s)	127, 463
BssECI	CCNNGG	4 cut(s)	27, 138, 229, 502
BssMI	GATC	3 cut(s)	6, 23, 478
BssNI	GRCGYC	3 cut(s)	326, 507, 524
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	2 cut(s)	29, 284
BstACI	GRCGYC	3 cut(s)	326, 507, 524
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	4 cut(s)	108, 129, 395, 465
BstDEI	CTNAG	4 cut(s)	93, 123, 213, 434
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	3 cut(s)	9, 26, 481
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	3 cut(s)	6, 23, 478
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 124, 190, 209, 298, 349, 403, 464
BstNI	CCWGG	2 cut(s)	29, 284
BstSCI	CCNGG	3 cut(s)	14, 27, 282
BstUI	CGCG	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	32, 134, 440, 488
BtgI	CCRYGG	1 cut(s)	502
BtsCI	GGATG	1 cut(s)	327
Cac8I	GCNNGC	4 cut(s)	108, 129, 395, 465
CaiI	CAGNNNCTG	2 cut(s)	220, 298
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	2 cut(s)	127, 463
Cfr13I	GGNCC	5 cut(s)	18, 133, 142, 438, 499
CseI	GACGC	4 cut(s)	195, 349, 496, 513
CviAII	CATG	1 cut(s)	448
DdeI	CTNAG	4 cut(s)	93, 123, 213, 434
DpnI	GATC	3 cut(s)	8, 25, 480
DpnII	GATC	3 cut(s)	6, 23, 478
DrdI	GACNNNNNNGTC	1 cut(s)	506
DseDI	GACNNNNNNGTC	1 cut(s)	506
EaeI	YGGCCR	2 cut(s)	30, 486
EciI	GGCGGA	3 cut(s)	180, 190, 482
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	4 cut(s)	102, 120, 366, 516
Eco47I	GGWCC	3 cut(s)	18, 142, 499
Eco53kI	GAGCTC	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	434
Eco88I	CYCGRG	2 cut(s)	137, 250
EcoICRI	GAGCTC	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	27, 282
EcoT14I	CCWWGG	1 cut(s)	229
EcoT38I	GRGCYC	4 cut(s)	102, 120, 366, 516
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	451
FaiI	YATR	5 cut(s)	169, 423, 449, 494, 551
FaqI	GGGAC	3 cut(s)	128, 253, 309
FatI	CATG	1 cut(s)	447
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	111, 132, 204, 559
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	4 cut(s)	102, 120, 366, 516
Fsp4HI	GCNGC	4 cut(s)	111, 132, 204, 559
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	4 cut(s)	111, 132, 204, 559
GsaI	CCCAGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	4 cut(s)	32, 134, 440, 488
HapII	CCGG	3 cut(s)	16, 128, 464
HgaI	GACGC	4 cut(s)	195, 349, 496, 513
HhaI	GCGC	1 cut(s)	186
Hin1I	GRCGYC	3 cut(s)	326, 507, 524
Hin1II	CATG	1 cut(s)	451
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	287, 566
HpaII	CCGG	3 cut(s)	16, 128, 464
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188III	TCNNGA	4 cut(s)	64, 95, 367, 448
Hpy8I	GTNNAC	1 cut(s)	339
Hpy99I	CGWCG	3 cut(s)	211, 512, 529
HpyAV	CCTTC	2 cut(s)	67, 88
HpyCH4IV	ACGT	2 cut(s)	306, 326
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 124, 190, 209, 298, 349, 403, 464
HpyF3I	CTNAG	4 cut(s)	93, 123, 213, 434
HpySE526I	ACGT	2 cut(s)	306, 326
Hsp92I	GRCGYC	3 cut(s)	326, 507, 524
Hsp92II	CATG	1 cut(s)	451
HspAI	GCGC	1 cut(s)	184
KroI	GCCGGC	2 cut(s)	127, 463
KroNI	GCCGGC	2 cut(s)	129, 465
Kzo9I	GATC	3 cut(s)	6, 23, 478
LmnI	GCTCC	4 cut(s)	97, 153, 228, 455
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	306, 326
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	3 cut(s)	8, 25, 480
MbiI	CCGCTC	2 cut(s)	148, 453
MboI	GATC	3 cut(s)	6, 23, 478
MboII	GAAGA	2 cut(s)	52, 301
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	4 cut(s)	102, 120, 366, 516
MlsI	TGGCCA	2 cut(s)	32, 488
MluNI	TGGCCA	2 cut(s)	32, 488
MlyI	GAGTC	1 cut(s)	281
Mox20I	TGGCCA	2 cut(s)	32, 488
MreI	CGCCGGCG	1 cut(s)	463
MroNI	GCCGGC	2 cut(s)	127, 463
MscI	TGGCCA	2 cut(s)	32, 488
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	334
Msp20I	TGGCCA	2 cut(s)	32, 488
MspI	CCGG	3 cut(s)	16, 128, 464
MspR9I	CCNGG	3 cut(s)	16, 29, 284
MvaI	CCWGG	2 cut(s)	29, 284
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	8 cut(s)	11, 124, 190, 209, 298, 349, 403, 464
NaeI	GCCGGC	2 cut(s)	129, 465
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	3 cut(s)	6, 23, 478
NgoMIV	GCCGGC	2 cut(s)	127, 463
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	6 cut(s)	20, 99, 135, 144, 236, 457
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	327
OliI	CACNNNNGTG	1 cut(s)	334
PagI	TCATGA	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdiI	GCCGGC	2 cut(s)	129, 465
PkrI	GCNGC	4 cut(s)	112, 133, 205, 560
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	142
PsiI	TTATAA	1 cut(s)	423
Psp124BI	GAGCTC	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	27, 282
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	2 cut(s)	27, 282
PspN4I	GGNNCC	6 cut(s)	20, 99, 135, 144, 236, 457
PspPI	GGNCC	5 cut(s)	18, 133, 142, 438, 499
PspPPI	RGGWCCY	1 cut(s)	142
PstNI	CAGNNNCTG	2 cut(s)	220, 298
PsuI	RGATCY	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	334
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	4 cut(s)	111, 132, 204, 559
Sau3AI	GATC	3 cut(s)	6, 23, 478
Sau96I	GGNCC	5 cut(s)	18, 133, 142, 438, 499
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	3 cut(s)	16, 29, 284
SduI	GDGCHC	4 cut(s)	102, 120, 366, 516
SfaNI	GCATC	1 cut(s)	462
SgrAI	CRCCGGYG	1 cut(s)	463
SinI	GGWCC	3 cut(s)	18, 142, 499
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SsiI	CCGC	9 cut(s)	111, 131, 146, 191, 201, 204, 453, 467, 558
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	14, 27, 282
StyI	CCWWGG	1 cut(s)	229
TaiI	ACGT	2 cut(s)	309, 329
TaqI	TCGA	1 cut(s)	510
TauI	GCSGC	4 cut(s)	113, 134, 206, 561
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	1 cut(s)	362
VpaK11BI	GGWCC	3 cut(s)	18, 142, 499
XmaJI	CCTAGG	1 cut(s)	229
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.