Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017411

Physical Location & Seq

Genomic Coordinates Forward (+)

71645617 .. 71651339

Gene Structure 5723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATTCTGTGGTTGAAATTTGGTGGCCGGAAGAGGAGTTGGCTGCCACATAAACGAGTGCCGCGCGTGAACAGTGCGGTGCGTGAACAGTGGTGGAGTTTAAACATTCCCATCCAAAAAAAGAGGAAAGCTCATTCTTCTGCTGTTGCTTTGTTAGTTATTTTGCACTATCTGAATCTCTTATTTTTATTCAGGGAGGAGTTTAGAGAGAAGTACAAGAAGGAACATCCCAACAACAGATCGGTCACTACCGTAAGTGAATCTCATTTCCCAGATCTACATGCTCAATTCTCTCAACTTCTCCTTGCTCTTTTTGATTGTCTCTTTTTGGATAAAAATTATACAGGAGAGAGGGCCCTACCACTCTACCAGGCCAAGGCAGAGAAGAGGAAGGTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

133

Amino Acids

15.86

Weight (kDa)

10.15

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322731 RchiOBHm_Chr4g0384911 RchiOBHm_Chr5g0024771 RchiOBHm_Chr5g0025251
rosa_laevigata	RLG00000009123
rosa_multiflora	Rmu_co8108714.1_g000001 Rmu_sc0005690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051130 Rroxscaffold_3G00245460 Rroxscaffold_6G00412210 Rroxscaffold_7G00186660 Rroxscaffold_7G00203230
rosa_samantha	Rh7AG033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	64, 66
AciI	CCGC	2 cut(s)	62, 77
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	16, 398
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	326
AoxI	GGCC	3 cut(s)	25, 354, 372
ApaI	GGGCCC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	354, 355
BaeGI	GKGCMC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	2 cut(s)	44, 62
BlsI	GCNGC	2 cut(s)	45, 63
Bme1390I	CCNGG	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	354, 355
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	371
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	2 cut(s)	111, 226
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseRI	GAGGAG	2 cut(s)	49, 212
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	30
Bsh1236I	CGCG	2 cut(s)	64, 66
BshFI	GGCC	3 cut(s)	27, 356, 374
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	27, 356, 374
Bsp120I	GGGCCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	239, 274
BspACI	CCGC	2 cut(s)	62, 77
BspANI	GGCC	3 cut(s)	27, 356, 374
BspFNI	CGCG	2 cut(s)	64, 66
BspLI	GGNNCC	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	239, 274
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	74, 90, 253
Bst6I	CTCTTC	2 cut(s)	26, 380
BstF5I	GGATG	2 cut(s)	111, 226
BstFNI	CGCG	2 cut(s)	64, 66
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	2 cut(s)	242, 277
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	239, 274
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	2 cut(s)	64, 66
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	27, 356, 374
BtsCI	GGATG	2 cut(s)	111, 226
BtsIMutI	CAGTG	2 cut(s)	79, 95
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	354, 355
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	5 cut(s)	27, 43, 131, 356, 374
CviKI_1	RGCY	5 cut(s)	27, 43, 131, 356, 374
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	2 cut(s)	241, 276
DpnII	GATC	2 cut(s)	239, 274
DraI	TTTAAA	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	26, 380
EarI	CTCTTC	2 cut(s)	26, 380
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	358
EcoO109I	RGGNCCY	2 cut(s)	354, 355
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	284
FaiI	YATR	3 cut(s)	51, 282, 342
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	44, 62
FokI	GGATG	2 cut(s)	98, 213
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	44, 62
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	2 cut(s)	44, 62
HaeIII	GGCC	3 cut(s)	27, 356, 374
HapII	CCGG	1 cut(s)	28
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	4, 175, 260
HpaII	CCGG	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	70, 86
Hpy188I	TCNGA	1 cut(s)	174
Hpy8I	GTNNAC	2 cut(s)	70, 86
HpyAV	CCTTC	2 cut(s)	214, 385
HpyCH4III	ACNGT	3 cut(s)	74, 90, 253
HpyCH4V	TGCA	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	239, 274
LpnPI	CCDG	6 cut(s)	41, 178, 285, 330, 356, 383
Lsp1109I	GCAGC	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	241, 276
MboI	GATC	2 cut(s)	239, 274
MboII	GAAGA	3 cut(s)	43, 129, 397
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	3 cut(s)	17, 287, 337
MnlI	CCTC	5 cut(s)	27, 117, 190, 345, 381
MseI	TTAA	1 cut(s)	101
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	371
MssI	GTTTAAAC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	371
MvnI	CGCG	2 cut(s)	64, 66
NdeII	GATC	2 cut(s)	239, 274
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	284
PfeI	GAWTC	3 cut(s)	4, 175, 260
PkrI	GCNGC	2 cut(s)	45, 63
PmeI	GTTTAAAC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	356
PspOMI	GGGCCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	354, 355
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	2 cut(s)	44, 62
Sau3AI	GATC	2 cut(s)	239, 274
Sau96I	GGNCC	2 cut(s)	354, 355
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	2 cut(s)	133, 396
Sse9I	AATT	3 cut(s)	17, 287, 337
SsiI	CCGC	2 cut(s)	62, 77
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	74, 90, 253
TaqII	GACCGA	1 cut(s)	232
TasI	AATT	3 cut(s)	17, 287, 337
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	3 cut(s)	4, 175, 260
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	79, 95
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	244
TspRI	CASTG	2 cut(s)	79, 95
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.