Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017411

Physical Location & Seq

Genomic Coordinates Forward (+)

25971452 .. 25976648

Gene Structure 5197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAGCGATTGTTTGAGCCGTGGATAAGGTCGCGGGACAACGGCGGCAAACCCAATAAGTACGATGTGAGCTCTTATAATCATTACCTCGGGGCCAATCTCATGAGTGGAGCCTCTCCGGCCGAGATGTTGGATGCGGTGGCCGATATGGAGAACCACGATGTCGAGCCCAACACAGTTGTCTTTTTTGGGCGAACACGGGCCACAACTTGCCGAATTCCACGCATAGGTCTCACTTTTCCAAACGGTTTACCATGCATAAGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

89

Amino Acids

9.99

Weight (kDa)

6.71

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322731 RchiOBHm_Chr4g0384911 RchiOBHm_Chr5g0024771 RchiOBHm_Chr5g0025251
rosa_laevigata	RLG00000009123
rosa_multiflora	Rmu_co8108714.1_g000001 Rmu_sc0005690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051130 Rroxscaffold_3G00245460 Rroxscaffold_6G00412210 Rroxscaffold_7G00186660 Rroxscaffold_7G00203230
rosa_samantha	Rh7AG033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccII	CGCG	1 cut(s)	34
AciI	CCGC	3 cut(s)	34, 45, 137
AcoI	YGGCCR	2 cut(s)	120, 141
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	4 cut(s)	93, 120, 141, 201
ApoI	RAATTY	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	93, 201
AvaI	CYCGRG	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	74, 171
Bbv12I	GWGCWC	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	4, 58
BcoDI	GTCTC	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	93, 201
BmiI	GGNNCC	2 cut(s)	94, 112
BmsI	GCATC	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	20, 88
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	20, 88
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseX3I	CGGCCG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	95, 122, 143, 203
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	4 cut(s)	95, 122, 143, 203
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	74, 171
BspACI	CCGC	3 cut(s)	34, 45, 137
BspANI	GGCC	4 cut(s)	95, 122, 143, 203
BspFNI	CGCG	1 cut(s)	34
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	94, 112
BspTNI	GGTCTC	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	20, 88
Bst4CI	ACNGT	2 cut(s)	178, 248
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	236
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	4 cut(s)	95, 122, 143, 203
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	139
CciI	TCATGA	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	93, 201
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	2 cut(s)	103, 255
CviJI	RGCY	8 cut(s)	19, 72, 95, 113, 122, 143, 169, 203
CviKI_1	RGCY	8 cut(s)	19, 72, 95, 113, 122, 143, 169, 203
CviQI	GTAC	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	120, 141
EagI	CGGCCG	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	72
EclXI	CGGCCG	1 cut(s)	120
Eco24I	GRGCYC	2 cut(s)	74, 171
Eco31I	GGTCTC	1 cut(s)	236
Eco52I	CGGCCG	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	260
EcoT38I	GRGCYC	2 cut(s)	74, 171
FaeI	CATG	2 cut(s)	106, 258
FaiI	YATR	7 cut(s)	78, 104, 149, 227, 256, 260, 268
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	2 cut(s)	102, 254
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	2 cut(s)	74, 171
Fsp4HI	GCNGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	46
HaeIII	GGCC	4 cut(s)	95, 122, 143, 203
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	2 cut(s)	106, 258
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	178, 248
HpyCH4V	TGCA	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	106, 258
LmnI	GCTCC	2 cut(s)	4, 110
LpnPI	CCDG	1 cut(s)	132
LweI	GCATC	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	74, 171
MluCI	AATT	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	98, 124
Mph1103I	ATGCAT	1 cut(s)	260
MspI	CCGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	106, 258
NlaIV	GGNNCC	2 cut(s)	94, 112
NmeAIII	GCCGAG	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	260
PagI	TCATGA	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	94, 112
PspPI	GGNCC	2 cut(s)	93, 201
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	74
SatI	GCNGC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	93, 201
SduI	GDGCHC	2 cut(s)	74, 171
SetI	ASST	4 cut(s)	32, 74, 90, 232
SfaNI	GCATC	1 cut(s)	124
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	3 cut(s)	34, 45, 137
SstI	GAGCTC	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	178, 248
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	216
TauI	GCSGC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.