RchiOBHm_Chr1g0330671

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008169
Physical Location & Seq
Forward (+)
20475932 .. 20477381
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55981

Sequence Viewer

Length: 663 bp
ATGATACTGTTTCTAATTATAGTATTTATGTGCAGAAATCATATCACTCCAGGGACTCGTCGAGTTCTGGTGCCTCCCAGGCAGGCTGTTGTCATTAAGCGGTGGTTTGGAATGTACTCCAAGACCCTATTATCTGGAGAATATTTCTTAATTCCGTATTTTGATAAAATTGCTTCTGTGCATTGCTTGAAACCCAAGACCATAAATCTTCTGGCCCAGAAAGCTATCACCAAAAACAATGTGGGCCTTACTGTTACTAGCCAGTTAACTCTCAAGATTTTGGAGCCTATGTTAGCTACTTATGCGGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCAGAGTACCCAGTCTAATGCAATTGGTGACCTCACTCTTGAACAGATAATGGAGGATCAGCAAAGCCTCAATCAACACATATTGTCATTTCTCAACGACAGGATCTGTAGATGGGGCTTGTCTTGTGAGGCGTTTGAGATAAATGACATAGCAGTTCCACATGAGGTGAAGAAAGCTATTGAGGACTTTAAGGCAGCCAAAGCAAAGAGAGCTGCCATACTGGAGTCAGTTGCTGACTTCTTCTCCAAGGCTACTAAGGAAGCTGGTGGGAGAAGAGGTAAGATTTTGTTCCCTCTACTGTGCTTGTACTATTTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

220

Amino Acids

24.78

Weight (kDa)

9.28

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 24 - 186 1.1e-21 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 309
AciI CCGC 2 cut(s) 100, 305
AclWI GGATC 2 cut(s) 405, 452
AfaI GTAC 3 cut(s) 116, 349, 650
AgsI TTSAA 3 cut(s) 190, 383, 659
AjnI CCWGG 2 cut(s) 49, 77
AluBI AGCT 5 cut(s) 224, 296, 518, 554, 605
AluI AGCT 5 cut(s) 224, 296, 518, 554, 605
AlwI GGATC 2 cut(s) 405, 452
AlwNI CAGNNNCTG 2 cut(s) 447, 575
AoxI GGCC 2 cut(s) 213, 244
ApeKI GCWGC 2 cut(s) 536, 554
AspS9I GGNCC 2 cut(s) 214, 244
AsuHPI GGTGA 3 cut(s) 220, 380, 520
BanI GGYRCC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 541, 548
BccI CCATC 1 cut(s) 447
BciT130I CCWGG 2 cut(s) 51, 79
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 448
BglI GCCNNNNNGGC 1 cut(s) 79
BisI GCNGC 2 cut(s) 537, 555
BlsI GCNGC 2 cut(s) 538, 556
Bme1390I CCNGG 2 cut(s) 51, 79
BmgT120I GGNCC 2 cut(s) 214, 244
BmiI GGNNCC 2 cut(s) 72, 285
BmrFI CCNGG 2 cut(s) 51, 79
BmrI ACTGGG 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 346
BpmI CTGGAG 3 cut(s) 33, 156, 584
BpuEI CTTGAG 1 cut(s) 257
BsaJI CCNNGG 3 cut(s) 50, 77, 588
BsaXI ACNNNNNCTCC 6 cut(s) 275, 305, 569, 599, 604, 634
Bse1I ACTGG 3 cut(s) 262, 352, 567
Bse3DI GCAATG 1 cut(s) 181
BseBI CCWGG 2 cut(s) 51, 79
BseDI CCNNGG 3 cut(s) 50, 77, 588
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 3 cut(s) 262, 352, 567
BseXI GCAGC 2 cut(s) 541, 548
BsgI GTGCAG 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 215, 246
BshNI GGYRCC 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 215, 246
Bsp143I GATC 2 cut(s) 397, 444
BspACI CCGC 2 cut(s) 100, 305
BspANI GGCC 2 cut(s) 215, 246
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 72, 285
BspPI GGATC 2 cut(s) 405, 452
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 3 cut(s) 262, 352, 567
BssECI CCNNGG 3 cut(s) 50, 77, 588
BssMI GATC 2 cut(s) 397, 444
BssT1I CCWWGG 1 cut(s) 588
Bst2UI CCWGG 2 cut(s) 51, 79
Bst4CI ACNGT 3 cut(s) 9, 253, 642
Bst6I CTCTTC 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 342, 597
BstEII GGTNACC 1 cut(s) 368
BstKTI GATC 2 cut(s) 400, 447
BstMBI GATC 2 cut(s) 397, 444
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 5 cut(s) 79, 221, 302, 542, 551
BstNI CCWGG 2 cut(s) 51, 79
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 49, 77
BstSFI CTRYAG 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 541, 548
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BsuRI GGCC 2 cut(s) 215, 246
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 2 cut(s) 447, 575
Cfr13I GGNCC 2 cut(s) 214, 244
Csp6I GTAC 3 cut(s) 115, 348, 649
CviAII CATG 1 cut(s) 503
CviQI GTAC 3 cut(s) 115, 348, 649
DdeI CTNAG 2 cut(s) 342, 597
DpnI GATC 2 cut(s) 399, 446
DpnII GATC 2 cut(s) 397, 444
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 588
Eco91I GGTNACC 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 49, 77
EcoT14I CCWWGG 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 1 cut(s) 506
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 502
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 537, 555
Fsp4HI GCNGC 2 cut(s) 537, 555
FspBI CTAG 1 cut(s) 258
GluI GCNGC 2 cut(s) 537, 555
GsuI CTGGAG 3 cut(s) 33, 156, 584
HaeIII GGCC 2 cut(s) 215, 246
Hin1II CATG 1 cut(s) 506
HincII GTYRAC 2 cut(s) 267, 310
HindII GTYRAC 2 cut(s) 267, 310
HinfI GANTC 2 cut(s) 55, 566
HpaI GTTAAC 1 cut(s) 267
HphI GGTGA 3 cut(s) 220, 380, 520
Hpy166II GTNNAC 2 cut(s) 267, 310
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 3 cut(s) 135, 274, 380
Hpy8I GTNNAC 2 cut(s) 267, 310
Hpy99I CGWCG 1 cut(s) 63
HpyCH4III ACNGT 3 cut(s) 9, 253, 642
HpyCH4V TGCA 3 cut(s) 33, 181, 362
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 221, 302, 542, 551
HpyF3I CTNAG 2 cut(s) 342, 597
Hsp92II CATG 1 cut(s) 506
KspAI GTTAAC 1 cut(s) 267
Kzo9I GATC 2 cut(s) 397, 444
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 2 cut(s) 541, 548
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 253, 368
MalI GATC 2 cut(s) 399, 446
MboI GATC 2 cut(s) 397, 444
MboII GAAGA 4 cut(s) 200, 523, 574, 627
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 444
MluCI AATT 4 cut(s) 15, 150, 168, 363
MlyI GAGTC 2 cut(s) 49, 575
MnlI CCTC 9 cut(s) 84, 383, 388, 419, 463, 499, 517, 611, 645
MseI TTAA 4 cut(s) 96, 149, 266, 531
MspR9I CCNGG 2 cut(s) 51, 79
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 2 cut(s) 51, 79
MwoI GCNNNNNNNGC 5 cut(s) 79, 221, 302, 542, 551
NdeII GATC 2 cut(s) 397, 444
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 2 cut(s) 72, 285
NmuCI GTSAC 1 cut(s) 368
PkrI GCNGC 2 cut(s) 538, 556
PleI GAGTC 2 cut(s) 49, 574
PpsI GAGTC 2 cut(s) 49, 574
Psp6I CCWGG 2 cut(s) 49, 77
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 49, 77
PspN4I GGNNCC 2 cut(s) 72, 285
PspPI GGNCC 2 cut(s) 214, 244
PstNI CAGNNNCTG 2 cut(s) 447, 575
PsuI RGATCY 1 cut(s) 444
RsaI GTAC 3 cut(s) 116, 349, 650
RsaNI GTAC 3 cut(s) 115, 348, 649
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 4 cut(s) 96, 149, 266, 531
SatI GCNGC 2 cut(s) 537, 555
Sau3AI GATC 2 cut(s) 397, 444
Sau96I GGNCC 2 cut(s) 214, 244
SchI GAGTC 2 cut(s) 49, 575
ScrFI CCNGG 2 cut(s) 51, 79
SetI ASST 8 cut(s) 226, 298, 375, 510, 520, 556, 607, 622
SfcI CTRYAG 1 cut(s) 448
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 4 cut(s) 15, 150, 168, 363
SsiI CCGC 2 cut(s) 100, 305
SspI AATATT 1 cut(s) 143
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 49, 77
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 3 cut(s) 9, 253, 642
TaqI TCGA 2 cut(s) 61, 309
TasI AATT 4 cut(s) 15, 150, 168, 363
TatI WGTACW 2 cut(s) 114, 648
Tru1I TTAA 4 cut(s) 96, 149, 266, 531
Tru9I TTAA 4 cut(s) 96, 149, 266, 531
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 2 cut(s) 536, 554
Tsp45I GTSAC 1 cut(s) 368
TspGWI ACGGA 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 2 cut(s) 208, 238
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.