Rw0G003030

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00099
OG0008169
Physical Location & Seq
Reverse (-)
7780 .. 11548
3769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003030.1

Sequence Viewer

Length: 576 bp
ATGTTTAAGCCTACATCCCTTAACGGGTTGAGATCTCTATGGCACCTCAACCATTCCTCATCTGCCAGCTCTTGGTTTTCCCAGTTCTCTCCGTCGTCTTCTTCGTTTGCTCGATCGGACAGTTTCCTGACCGTTCGAAATTACGCCAGCAGTGTCGATGACAGAAATCATATCACTCCAGGGACTCGTCGAGTTCTGGTGCCTCCCAGGCAGGCTGTTGTCATTAAGCGGTGGTTTGGAATGTACTCCAAGACCCTGTTATCTGGAGAATATTTCTTAATTCCGTATTTTGATAAAATTGCTTCTGTGCATTGCTTGAAACCCAAGACCATAAATCTTCTGGCCCAGAAAGCTATCACCAAAAACAATGTGGCCCTTACTGTTACTAGCCAGTTAACTCTCAAGATTTTGGAGCCTATGTTAGCTACTTATGCGGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCAGAGTACCCAGTCTGATGCAATTGGTGAACTCACTGTTGAACACATAATGGAGGATCAGCAAAGCCTCAATCAACACATATTGGTAGGTTTATCAGCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

191

Amino Acids

21.2

Weight (kDa)

9.33

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 67 - 186 1.1e-11 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 42, 199
AccB7I CCANNNNNTGG 1 cut(s) 72
AccI GTMKAC 1 cut(s) 438
AciI CCGC 2 cut(s) 229, 434
AclWI GGATC 1 cut(s) 534
AfaI GTAC 2 cut(s) 245, 478
AfiI CCNNNNNNNGG 2 cut(s) 24, 72
AgsI TTSAA 2 cut(s) 319, 512
AjnI CCWGG 2 cut(s) 178, 206
AluBI AGCT 3 cut(s) 69, 353, 425
AluI AGCT 3 cut(s) 69, 353, 425
AlwI GGATC 1 cut(s) 534
AoxI GGCC 2 cut(s) 342, 372
AspS9I GGNCC 2 cut(s) 343, 373
AsuHPI GGTGA 2 cut(s) 349, 509
AsuII TTCGAA 1 cut(s) 136
BanI GGYRCC 2 cut(s) 42, 199
BbsI GAAGAC 1 cut(s) 90
BciT130I CCWGG 2 cut(s) 180, 208
BfaI CTAG 1 cut(s) 387
BglI GCCNNNNNGGC 1 cut(s) 208
BglII AGATCT 1 cut(s) 32
Bme1390I CCNGG 2 cut(s) 180, 208
BmgT120I GGNCC 2 cut(s) 343, 373
BmiI GGNNCC 3 cut(s) 44, 201, 414
BmrFI CCNGG 2 cut(s) 180, 208
BmrI ACTGGG 2 cut(s) 76, 475
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 2 cut(s) 76, 475
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 162, 285
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 179, 206
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 72
Bse1I ACTGG 3 cut(s) 82, 391, 481
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 180, 208
BseDI CCNNGG 2 cut(s) 179, 206
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 24, 72
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 3 cut(s) 82, 391, 481
Bsh1285I CGRYCG 2 cut(s) 116, 438
BshFI GGCC 2 cut(s) 344, 374
BshNI GGYRCC 2 cut(s) 42, 199
BsiEI CGRYCG 2 cut(s) 116, 438
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 24, 72
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 2 cut(s) 344, 374
Bsp119I TTCGAA 1 cut(s) 136
Bsp143I GATC 3 cut(s) 32, 113, 526
BspACI CCGC 2 cut(s) 229, 434
BspANI GGCC 2 cut(s) 344, 374
BspCNI CTCAG 1 cut(s) 484
BspLI GGNNCC 3 cut(s) 44, 201, 414
BspPI GGATC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 2 cut(s) 42, 199
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 3 cut(s) 82, 391, 481
BssECI CCNNGG 2 cut(s) 179, 206
BssMI GATC 3 cut(s) 32, 113, 526
Bst2UI CCWGG 2 cut(s) 180, 208
Bst4CI ACNGT 4 cut(s) 122, 133, 382, 508
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 4 cut(s) 67, 148, 213, 571
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 35, 116, 529
BstMBI GATC 3 cut(s) 32, 113, 526
BstMCI CGRYCG 2 cut(s) 116, 438
BstMWI GCNNNNNNNGC 3 cut(s) 208, 350, 431
BstNI CCWGG 2 cut(s) 180, 208
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 2 cut(s) 178, 206
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 2 cut(s) 344, 374
BtsCI GGATG 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 157, 504
Cac8I GCNNGC 4 cut(s) 67, 148, 213, 571
Cfr13I GGNCC 2 cut(s) 343, 373
Csp6I GTAC 2 cut(s) 244, 477
CviAII CATG 1 cut(s) 570
CviQI GTAC 2 cut(s) 244, 477
DdeI CTNAG 1 cut(s) 471
DpnI GATC 3 cut(s) 34, 115, 528
DpnII GATC 3 cut(s) 32, 113, 526
EcoRII CCWGG 2 cut(s) 178, 206
FaeI CATG 1 cut(s) 573
FaiI YATR 8 cut(s) 40, 171, 332, 419, 432, 518, 551, 571
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 569
FblI GTMKAC 1 cut(s) 438
FspBI CTAG 1 cut(s) 387
GsuI CTGGAG 2 cut(s) 162, 285
HaeIII GGCC 2 cut(s) 344, 374
Hin1II CATG 1 cut(s) 573
HincII GTYRAC 2 cut(s) 396, 439
HindII GTYRAC 2 cut(s) 396, 439
HinfI GANTC 1 cut(s) 184
HpaI GTTAAC 1 cut(s) 396
HphI GGTGA 2 cut(s) 349, 509
Hpy166II GTNNAC 3 cut(s) 396, 439, 500
Hpy188I TCNGA 3 cut(s) 118, 474, 487
Hpy188III TCNNGA 3 cut(s) 127, 264, 403
Hpy8I GTNNAC 3 cut(s) 396, 439, 500
Hpy99I CGWCG 2 cut(s) 97, 192
HpyCH4III ACNGT 4 cut(s) 122, 133, 382, 508
HpyCH4V TGCA 2 cut(s) 310, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 350, 431
HpyF3I CTNAG 1 cut(s) 471
Hsp92II CATG 1 cut(s) 573
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 3 cut(s) 32, 113, 526
LmnI GCTCC 1 cut(s) 412
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 382
MalI GATC 3 cut(s) 34, 115, 528
MboI GATC 3 cut(s) 32, 113, 526
MboII GAAGA 3 cut(s) 90, 93, 329
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 1 cut(s) 32
MluCI AATT 4 cut(s) 139, 279, 297, 492
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 5 cut(s) 56, 67, 213, 517, 548
MseI TTAA 5 cut(s) 6, 21, 225, 278, 395
MspR9I CCNGG 2 cut(s) 180, 208
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 2 cut(s) 180, 208
MwoI GCNNNNNNNGC 3 cut(s) 208, 350, 431
NdeII GATC 3 cut(s) 32, 113, 526
NlaIII CATG 1 cut(s) 573
NlaIV GGNNCC 3 cut(s) 44, 201, 414
NspI RCATGY 1 cut(s) 573
NspV TTCGAA 1 cut(s) 136
PaeI GCATGC 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 72
Ple19I CGATCG 1 cut(s) 116
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 178, 206
PspGI CCWGG 2 cut(s) 178, 206
PspN4I GGNNCC 3 cut(s) 44, 201, 414
PspPI GGNCC 2 cut(s) 343, 373
PsuI RGATCY 1 cut(s) 32
PvuI CGATCG 1 cut(s) 116
RsaI GTAC 2 cut(s) 245, 478
RsaNI GTAC 2 cut(s) 244, 477
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 5 cut(s) 6, 21, 225, 278, 395
Sau3AI GATC 3 cut(s) 32, 113, 526
Sau96I GGNCC 2 cut(s) 343, 373
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 2 cut(s) 180, 208
SetI ASST 5 cut(s) 48, 71, 355, 427, 562
SfaNI GCATC 1 cut(s) 478
SfuI TTCGAA 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SphI GCATGC 1 cut(s) 573
Sse9I AATT 4 cut(s) 139, 279, 297, 492
SsiI CCGC 2 cut(s) 229, 434
SspI AATATT 1 cut(s) 272
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 178, 206
TaaI ACNGT 4 cut(s) 122, 133, 382, 508
TaqI TCGA 5 cut(s) 112, 136, 156, 190, 438
TasI AATT 4 cut(s) 139, 279, 297, 492
TatI WGTACW 1 cut(s) 243
Tru1I TTAA 5 cut(s) 6, 21, 225, 278, 395
Tru9I TTAA 5 cut(s) 6, 21, 225, 278, 395
TscAI CASTG 2 cut(s) 157, 511
TspGWI ACGGA 2 cut(s) 81, 273
TspRI CASTG 2 cut(s) 157, 511
Van91I CCANNNNNTGG 1 cut(s) 72
XceI RCATGY 1 cut(s) 573
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 367
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.