Rh1AG108800

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008169
Physical Location & Seq
Forward (+)
18762568 .. 18778378
15811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG108800.1

Sequence Viewer

Length: 492 bp
ATGGATTCCCAGAGCCGGCGTGATGGCATGCCGTGTCTGGTGGTTACAGGGCAGAAAGCTATCACCAAAAACAATGTGGGCCTTACTGTTACTAGCCAGTTAACTCTCAAGATTTTGGAGCCTATGTTAGCTACTTATGCGGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCAGAGTACCCAGTCTGATGCAATTGGTGAACTCACTGTTGAACAGATAATGGAGGATCAGCAAAGCCTCAATCAACACATATTGTCATTTCTCAACGACAGGATCTGTAGATGGGGCTTGTCTTGTGAGGCGTTTGAGATAAATGACATAGCAGTTCCACATGAGGTGAAGAAAGCTATTGAGGACTTTAAGGCAGCCAAAGCAAAGAGAGCTGCCATACTGGAGTCAGTTGCTGACTTCTTCTCCAAGGCTACTAAGGAAGCTGGTGGGAGAAGAGTGCTGGGAAATTGCTCGTCAGGTTCTGCATCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

163

Amino Acids

17.67

Weight (kDa)

6.13

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 16 - 131 2.1e-13 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AciI CCGC 1 cut(s) 140
AclWI GGATC 2 cut(s) 240, 287
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 5 cut(s) 59, 131, 353, 389, 440
AluI AGCT 5 cut(s) 59, 131, 353, 389, 440
AlwI GGATC 2 cut(s) 240, 287
AlwNI CAGNNNCTG 3 cut(s) 282, 410, 479
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 371, 389
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 55, 215, 355
BbvI GCAGC 2 cut(s) 376, 383
BccI CCATC 2 cut(s) 17, 282
BceAI ACGGC 1 cut(s) 16
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 283
BisI GCNGC 2 cut(s) 372, 390
BlsI GCNGC 2 cut(s) 373, 391
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 423
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 404, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 3 cut(s) 97, 187, 402
BseDI CCNNGG 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 3 cut(s) 97, 187, 402
BseXI GCAGC 2 cut(s) 376, 383
BseYI CCCAGC 1 cut(s) 457
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 15
BsnI GGCC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 232, 279
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 120
BspPI GGATC 2 cut(s) 240, 287
BsrFI RCCGGY 1 cut(s) 15
BsrI ACTGG 3 cut(s) 97, 187, 402
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 2 cut(s) 232, 279
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 88, 214
Bst6I CTCTTC 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 17, 29
BstDEI CTNAG 2 cut(s) 177, 432
BstKTI GATC 2 cut(s) 235, 282
BstMBI GATC 2 cut(s) 232, 279
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 137, 377, 386
BstNSI RCATGY 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 376, 383
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BsuRI GGCC 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 17, 29
CaiI CAGNNNCTG 3 cut(s) 282, 410, 479
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 183
CviAII CATG 2 cut(s) 28, 338
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 177, 432
DpnI GATC 2 cut(s) 234, 281
DpnII GATC 2 cut(s) 232, 279
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 2 cut(s) 31, 341
FaiI YATR 7 cut(s) 29, 125, 138, 257, 326, 339, 395
FatI CATG 2 cut(s) 27, 337
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 372, 390
Fsp4HI GCNGC 2 cut(s) 372, 390
FspBI CTAG 1 cut(s) 93
GluI GCNGC 2 cut(s) 372, 390
GsaI CCCAGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 16
Hin1II CATG 2 cut(s) 31, 341
HincII GTYRAC 2 cut(s) 102, 145
HindII GTYRAC 2 cut(s) 102, 145
HinfI GANTC 2 cut(s) 5, 401
HpaI GTTAAC 1 cut(s) 102
HpaII CCGG 1 cut(s) 16
HphI GGTGA 3 cut(s) 55, 215, 355
Hpy166II GTNNAC 3 cut(s) 102, 145, 206
Hpy188I TCNGA 2 cut(s) 180, 193
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 3 cut(s) 102, 145, 206
HpyCH4III ACNGT 2 cut(s) 88, 214
HpyCH4V TGCA 2 cut(s) 197, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 377, 386
HpyF3I CTNAG 2 cut(s) 177, 432
Hsp92II CATG 2 cut(s) 31, 341
KroI GCCGGC 1 cut(s) 15
KroNI GCCGGC 1 cut(s) 17
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 232, 279
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 2 cut(s) 376, 383
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 43, 88
MalI GATC 2 cut(s) 234, 281
MboI GATC 2 cut(s) 232, 279
MboII GAAGA 3 cut(s) 358, 409, 462
MfeI CAATTG 1 cut(s) 198
MflI RGATCY 1 cut(s) 279
MluCI AATT 2 cut(s) 198, 463
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 5 cut(s) 223, 254, 298, 334, 352
MroNI GCCGGC 1 cut(s) 15
MseI TTAA 2 cut(s) 101, 366
MspI CCGG 1 cut(s) 16
MunI CAATTG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 137, 377, 386
NaeI GCCGGC 1 cut(s) 17
NdeII GATC 2 cut(s) 232, 279
NgoMIV GCCGGC 1 cut(s) 15
NlaIII CATG 2 cut(s) 31, 341
NlaIV GGNNCC 1 cut(s) 120
NspI RCATGY 1 cut(s) 31
PaeI GCATGC 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 373, 391
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PspFI CCCAGC 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 79
PstNI CAGNNNCTG 3 cut(s) 282, 410, 479
PsuI RGATCY 1 cut(s) 279
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 101, 366
SatI GCNGC 2 cut(s) 372, 390
Sau3AI GATC 2 cut(s) 232, 279
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 410
SetI ASST 8 cut(s) 61, 133, 345, 355, 391, 442, 478, 491
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SphI GCATGC 1 cut(s) 31
Sse9I AATT 2 cut(s) 198, 463
SsiI CCGC 1 cut(s) 140
SspMI CTAG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 88, 214
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 198, 463
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 101, 366
Tru9I TTAA 2 cut(s) 101, 366
TscAI CASTG 1 cut(s) 217
TseI GCWGC 2 cut(s) 371, 389
TspRI CASTG 1 cut(s) 217
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.