Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004401.1

Orthogroup ID

OG0008169

Physical Location & Seq

Genomic Coordinates Forward (+)

21140 .. 23778

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004401.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgtttaagcctaaatcccttaacgggttgagatctctatggcacctcaaccattcctcatctgccagctcttggttttcccagttctctccgtcgtcgtcttcgtttgctcgatcagatagtttccagaccgttcgaaattacgccagcagtgtcgatgacagaaatcatatcactccagggaatcgtcgagttctggtgcctcccaggcaggctgttgtcattaagcggtggtttggaatatactccaagaccctattatctggagaatatttcttaattccgtattttgataaaattgcttctgtgcattgcttgaaacccaagaccataaatcttctggcccagaaagctatcaccaaaaacaatgtggaccttactgttactagccagttaactctcaagattttggaccctatgttagctacttatgcggtcgacaatcccattgataaggctattggtcttgctcagagtacccagtctgatgcaattggtgaactcactgttgaacagataatggaggatcagcaaagcctcaatcaacacatatcggtttataatggaggaaagctaatgggtcgtagtcatttgggaaatatgaatcacaggataacacatgacatagcagttccacatgaggtgaagaaagctattgaggactttaaggcagccaaagcaaagagagctgccatacttgagtcaggtacggaactctttaactccaagtattttagtcccagtaatgtgcactttctggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

254

Amino Acids

28.39

Weight (kDa)

9.52

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008169)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323811 RchiOBHm_Chr1g0330671
rosa_multiflora	Rmu_sc0002634.1_g000009 Rmu_sc0004401.1_g000005
rosa_roxburghii	Rroxscaffold_4G00319770
rosa_rugosa	Rorug01G0090400 Rorug01G0090400
rosa_samantha	Rh1AG057000 Rh1AG108800 Rh1AG110000 Rh1AG110800 Rh1BG048000 Rh1CG058300 Rh1CG104700 Rh1CG105700 Rh1DG062000 Rh1DG111600 Rh1DG111700 Rh1DG113900 Rh1DG114500
rosa_wichuraiana	Rw0G003030 Rw1G004850 Rw1G008710 Rw1G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AccB1I	GGYRCC	2 cut(s)	42, 199
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	2 cut(s)	229, 434
AclWI	GGATC	1 cut(s)	534
AfaI	GTAC	2 cut(s)	478, 709
AfiI	CCNNNNNNNGG	2 cut(s)	24, 72
AgsI	TTSAA	2 cut(s)	319, 512
AjnI	CCWGG	2 cut(s)	178, 206
AluBI	AGCT	6 cut(s)	69, 353, 425, 574, 653, 689
AluI	AGCT	6 cut(s)	69, 353, 425, 574, 653, 689
Alw21I	GWGCWC	1 cut(s)	753
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	1 cut(s)	534
AoxI	GGCC	1 cut(s)	342
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	2 cut(s)	671, 689
AspS9I	GGNCC	3 cut(s)	343, 373, 412
AsuHPI	GGTGA	3 cut(s)	349, 509, 655
AsuII	TTCGAA	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	373, 412
BaeGI	GKGCMC	1 cut(s)	753
BanI	GGYRCC	2 cut(s)	42, 199
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	676, 683
BciT130I	CCWGG	2 cut(s)	180, 208
BfaI	CTAG	1 cut(s)	387
BglI	GCCNNNNNGGC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	2 cut(s)	672, 690
BlsI	GCNGC	2 cut(s)	673, 691
Bme1390I	CCNGG	2 cut(s)	180, 208
Bme18I	GGWCC	2 cut(s)	373, 412
BmgT120I	GGNCC	3 cut(s)	343, 373, 412
BmiI	GGNNCC	3 cut(s)	44, 201, 414
BmrFI	CCNGG	2 cut(s)	180, 208
BmrI	ACTGGG	3 cut(s)	76, 475, 735
BmsI	GCATC	1 cut(s)	478
BmuI	ACTGGG	3 cut(s)	76, 475, 735
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	2 cut(s)	162, 285
Bpu14I	TTCGAA	1 cut(s)	136
BpuEI	CTTGAG	2 cut(s)	386, 719
BsaJI	CCNNGG	2 cut(s)	179, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 72
Bse1I	ACTGG	4 cut(s)	82, 391, 481, 741
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	180, 208
BseDI	CCNNGG	2 cut(s)	179, 206
BseLI	CCNNNNNNNGG	2 cut(s)	24, 72
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	4 cut(s)	82, 391, 481, 741
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	2 cut(s)	676, 683
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	2 cut(s)	42, 199
BsiEI	CGRYCG	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	2 cut(s)	24, 72
BsmFI	GGGAC	1 cut(s)	723
BsnI	GGCC	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	3 cut(s)	32, 113, 526
BspACI	CCGC	2 cut(s)	229, 434
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	44, 201, 414
BspPI	GGATC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	136
BspT107I	GGYRCC	2 cut(s)	42, 199
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	4 cut(s)	82, 391, 481, 741
BssECI	CCNNGG	2 cut(s)	179, 206
BssMI	GATC	3 cut(s)	32, 113, 526
Bst2UI	CCWGG	2 cut(s)	180, 208
Bst4CI	ACNGT	3 cut(s)	133, 382, 508
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	67, 148, 213
BstDEI	CTNAG	1 cut(s)	471
BstKTI	GATC	3 cut(s)	35, 116, 529
BstMBI	GATC	3 cut(s)	32, 113, 526
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	5 cut(s)	208, 350, 431, 677, 686
BstNI	CCWGG	2 cut(s)	180, 208
BstSCI	CCNGG	2 cut(s)	178, 206
BstSLI	GKGCMC	1 cut(s)	753
BstV1I	GCAGC	2 cut(s)	676, 683
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	344
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	157, 504
Cac8I	GCNNGC	3 cut(s)	67, 148, 213
Cfr13I	GGNCC	3 cut(s)	343, 373, 412
Csp6I	GTAC	2 cut(s)	477, 708
CviAII	CATG	2 cut(s)	620, 638
CviQI	GTAC	2 cut(s)	477, 708
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	3 cut(s)	34, 115, 528
DpnII	GATC	3 cut(s)	32, 113, 526
Eco47I	GGWCC	2 cut(s)	373, 412
EcoRII	CCWGG	2 cut(s)	178, 206
FaeI	CATG	2 cut(s)	623, 641
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	2 cut(s)	619, 637
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	672, 690
Fsp4HI	GCNGC	2 cut(s)	672, 690
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	672, 690
GsuI	CTGGAG	2 cut(s)	162, 285
HaeIII	GGCC	1 cut(s)	344
Hin1II	CATG	2 cut(s)	623, 641
HincII	GTYRAC	2 cut(s)	396, 439
HindII	GTYRAC	2 cut(s)	396, 439
HinfI	GANTC	3 cut(s)	184, 604, 701
HpaI	GTTAAC	1 cut(s)	396
HphI	GGTGA	3 cut(s)	349, 509, 655
Hpy166II	GTNNAC	5 cut(s)	373, 396, 439, 500, 751
Hpy188I	TCNGA	3 cut(s)	118, 474, 487
Hpy188III	TCNNGA	4 cut(s)	127, 264, 403, 758
Hpy8I	GTNNAC	5 cut(s)	373, 396, 439, 500, 751
Hpy99I	CGWCG	3 cut(s)	97, 100, 192
HpyCH4III	ACNGT	3 cut(s)	133, 382, 508
HpyCH4V	TGCA	3 cut(s)	310, 491, 751
HpyF10VI	GCNNNNNNNGC	5 cut(s)	208, 350, 431, 677, 686
HpyF3I	CTNAG	1 cut(s)	471
Hsp92II	CATG	2 cut(s)	623, 641
KspAI	GTTAAC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	32, 113, 526
Lsp1109I	GCAGC	2 cut(s)	676, 683
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	3 cut(s)	34, 115, 528
MboI	GATC	3 cut(s)	32, 113, 526
MboII	GAAGA	3 cut(s)	93, 329, 658
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	4 cut(s)	139, 279, 297, 492
MlyI	GAGTC	1 cut(s)	710
MnlI	CCTC	8 cut(s)	56, 67, 213, 517, 548, 560, 634, 652
MseI	TTAA	8 cut(s)	6, 21, 225, 278, 395, 666, 720, 763
MspR9I	CCNGG	2 cut(s)	180, 208
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	180, 208
MwoI	GCNNNNNNNGC	5 cut(s)	208, 350, 431, 677, 686
NdeII	GATC	3 cut(s)	32, 113, 526
NlaIII	CATG	2 cut(s)	623, 641
NlaIV	GGNNCC	3 cut(s)	44, 201, 414
NspV	TTCGAA	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	184, 604
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	673, 691
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	178, 206
PspGI	CCWGG	2 cut(s)	178, 206
PspN4I	GGNNCC	3 cut(s)	44, 201, 414
PspPI	GGNCC	3 cut(s)	343, 373, 412
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	2 cut(s)	478, 709
RsaNI	GTAC	2 cut(s)	477, 708
SalI	GTCGAC	1 cut(s)	437
SaqAI	TTAA	8 cut(s)	6, 21, 225, 278, 395, 666, 720, 763
SatI	GCNGC	2 cut(s)	672, 690
Sau3AI	GATC	3 cut(s)	32, 113, 526
Sau96I	GGNCC	3 cut(s)	343, 373, 412
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	2 cut(s)	180, 208
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	136
SinI	GGWCC	2 cut(s)	373, 412
SmlI	CTYRAG	2 cut(s)	401, 698
SmoI	CTYRAG	2 cut(s)	401, 698
Sse9I	AATT	4 cut(s)	139, 279, 297, 492
SsiI	CCGC	2 cut(s)	229, 434
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	178, 206
TaaI	ACNGT	3 cut(s)	133, 382, 508
TaqI	TCGA	5 cut(s)	112, 136, 156, 190, 438
TasI	AATT	4 cut(s)	139, 279, 297, 492
TfiI	GAWTC	2 cut(s)	184, 604
Tru1I	TTAA	8 cut(s)	6, 21, 225, 278, 395, 666, 720, 763
Tru9I	TTAA	8 cut(s)	6, 21, 225, 278, 395, 666, 720, 763
TscAI	CASTG	2 cut(s)	157, 511
TseI	GCWGC	2 cut(s)	671, 689
TspDTI	ATGAA	1 cut(s)	617
TspGWI	ACGGA	3 cut(s)	81, 273, 725
TspRI	CASTG	2 cut(s)	157, 511
Van91I	CCANNNNNTGG	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	373, 412
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 367
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.