Rh1DG062000

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008169
Physical Location & Seq
Forward (+)
10962395 .. 10965899
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG062000.1

Sequence Viewer

Length: 771 bp
ATGTTTAAGCCTAAATCCCTTAACGCGTTGAGATCTCTGAGGCACCTCAACCATTCCTCATCTGCCAGCTCTTGGTTATCCCAGTTGTCTCCGTCGTCGTCGTCTTCTTCGTTTGCTCGATCGGACAGTTTCCAGACCGTTCGAAATTACGCCAGCGGTGTCGATAACAGAAATCATATCACTTTTGGGACTCGTCGAGTTCTGGTGCCTCCCAGGCGGGCTGTTGTCATTAAGCGGTGGTTTGGAATGTACTCCAAGACCCTATTATCTGGAGAATATTTCTTAATTCCGTATTTTGATAAAATTGCTTCCGTGCATTGCTTGAAACCCAAGACCATAAATCTTCTTGCCCAGAAAGCTATAACCAAAAACAACGTGAGCCTTACTGTTACTGGCCATTTAACACTCAAGATTGTGGAGCCTCTGTTAGCCTCTTATGCGGTCGACAATCCCATTGATAAGGCTACTGGTCTTGCTCAGAGTACCCTGTGTGATGCAGTTGGTGAACTCACTGTTGAACAGATAATGGAAGAGCAGCGAAGCCTCAATCTACACATATCGTCATTTCTCAACGACAGGATCTGTAGATGGGGCTTGTCTTGTGAGGCATTTGAGATAAATGACATAGCAGTTCCACATGAGGTGAAGAAAGCTATTGAGGACTTTAAGGCAACCAAAGCAAAGAGAGCTGCCATACTGGAGTCAGTTGCTGACTTCTTCTCCAAGGCTACTAAGGAAGCTGGTGGGGGACGAGGTTCTCCATCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

256

Amino Acids

28.25

Weight (kDa)

9.62

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 69 - 230 7.2e-21 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 42, 205
AccB7I CCANNNNNTGG 1 cut(s) 72
AccI GTMKAC 1 cut(s) 444
AccII CGCG 1 cut(s) 26
AciI CCGC 4 cut(s) 156, 217, 235, 440
AclWI GGATC 1 cut(s) 587
AcoI YGGCCR 1 cut(s) 394
AfaI GTAC 2 cut(s) 251, 484
AfiI CCNNNNNNNGG 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 325, 518
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 5 cut(s) 69, 359, 653, 689, 740
AluI AGCT 5 cut(s) 69, 359, 653, 689, 740
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 587
AlwNI CAGNNNCTG 2 cut(s) 582, 710
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 535, 689
AsuHPI GGTGA 2 cut(s) 515, 655
AsuII TTCGAA 1 cut(s) 142
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 2 cut(s) 42, 205
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 547, 676
BccI CCATC 2 cut(s) 582, 769
BciT130I CCWGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 583
BglI GCCNNNNNGGC 1 cut(s) 214
BglII AGATCT 1 cut(s) 32
BisI GCNGC 2 cut(s) 536, 690
BlsI GCNGC 2 cut(s) 537, 691
Bme1390I CCNGG 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 44, 207, 420
BmrFI CCNGG 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 484
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 2 cut(s) 291, 719
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 212, 723
BsaXI ACNNNNNCTCC 4 cut(s) 410, 440, 704, 734
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 4 cut(s) 82, 397, 472, 702
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 212, 723
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 29, 491
BseNI ACTGG 4 cut(s) 82, 397, 472, 702
BseXI GCAGC 2 cut(s) 547, 676
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 2 cut(s) 122, 444
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 2 cut(s) 42, 205
BsiEI CGRYCG 2 cut(s) 122, 444
BslFI GGGAC 2 cut(s) 202, 762
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 2 cut(s) 202, 762
BsnI GGCC 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 142
Bsp143I GATC 3 cut(s) 32, 119, 579
BspACI CCGC 4 cut(s) 156, 217, 235, 440
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 2 cut(s) 30, 490
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 3 cut(s) 44, 207, 420
BspPI GGATC 1 cut(s) 587
BspQI GCTCTTC 1 cut(s) 525
BspT104I TTCGAA 1 cut(s) 142
BspT107I GGYRCC 2 cut(s) 42, 205
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 4 cut(s) 82, 397, 472, 702
BssECI CCNNGG 2 cut(s) 212, 723
BssMI GATC 3 cut(s) 32, 119, 579
BssT1I CCWWGG 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 4 cut(s) 128, 139, 388, 514
Bst6I CTCTTC 1 cut(s) 525
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 3 cut(s) 67, 154, 219
BstDEI CTNAG 3 cut(s) 38, 477, 732
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 3 cut(s) 35, 122, 582
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 3 cut(s) 32, 119, 579
BstMCI CGRYCG 2 cut(s) 122, 444
BstMWI GCNNNNNNNGC 5 cut(s) 214, 356, 437, 677, 686
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 583
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 547, 676
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 32, 579
BstYI RGATCY 2 cut(s) 32, 579
BsuRI GGCC 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 67, 154, 219
CaiI CAGNNNCTG 2 cut(s) 582, 710
Csp6I GTAC 2 cut(s) 250, 483
CviAII CATG 1 cut(s) 638
CviQI GTAC 2 cut(s) 250, 483
DdeI CTNAG 3 cut(s) 38, 477, 732
DpnI GATC 3 cut(s) 34, 121, 581
DpnII GATC 3 cut(s) 32, 119, 579
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 723
EcoRII CCWGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 1 cut(s) 641
FaiI YATR 8 cut(s) 177, 338, 362, 438, 557, 626, 639, 695
FaqI GGGAC 2 cut(s) 202, 762
FatI CATG 1 cut(s) 637
FauI CCCGC 1 cut(s) 210
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 2 cut(s) 536, 690
Fsp4HI GCNGC 2 cut(s) 536, 690
GluI GCNGC 2 cut(s) 536, 690
GsuI CTGGAG 2 cut(s) 291, 719
HaeIII GGCC 1 cut(s) 396
Hin1II CATG 1 cut(s) 641
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 2 cut(s) 190, 701
HphI GGTGA 2 cut(s) 515, 655
Hpy166II GTNNAC 2 cut(s) 445, 506
Hpy188I TCNGA 3 cut(s) 39, 124, 480
Hpy188III TCNNGA 3 cut(s) 133, 270, 409
Hpy8I GTNNAC 2 cut(s) 445, 506
Hpy99I CGWCG 4 cut(s) 97, 100, 103, 198
HpyCH4III ACNGT 4 cut(s) 128, 139, 388, 514
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 316, 497
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 356, 437, 677, 686
HpyF3I CTNAG 3 cut(s) 38, 477, 732
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 1 cut(s) 641
Kzo9I GATC 3 cut(s) 32, 119, 579
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 2 cut(s) 547, 676
LweI GCATC 1 cut(s) 484
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 388
MalI GATC 3 cut(s) 34, 121, 581
MboI GATC 3 cut(s) 32, 119, 579
MboII GAAGA 6 cut(s) 96, 99, 335, 542, 658, 709
MflI RGATCY 2 cut(s) 32, 579
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 3 cut(s) 145, 285, 303
MluI ACGCGT 1 cut(s) 24
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 2 cut(s) 184, 710
Mox20I TGGCCA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 396
MseI TTAA 6 cut(s) 6, 21, 231, 284, 401, 666
Msp20I TGGCCA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 214
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 214, 356, 437, 677, 686
NdeII GATC 3 cut(s) 32, 119, 579
NlaIII CATG 1 cut(s) 641
NlaIV GGNNCC 3 cut(s) 44, 207, 420
NspV TTCGAA 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 2 cut(s) 537, 691
Ple19I CGATCG 1 cut(s) 122
PleI GAGTC 2 cut(s) 184, 709
PpsI GAGTC 2 cut(s) 184, 709
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 3 cut(s) 44, 207, 420
PstNI CAGNNNCTG 2 cut(s) 582, 710
PsuI RGATCY 2 cut(s) 32, 579
PvuI CGATCG 1 cut(s) 122
RsaI GTAC 2 cut(s) 251, 484
RsaNI GTAC 2 cut(s) 250, 483
SalI GTCGAC 1 cut(s) 443
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 6 cut(s) 6, 21, 231, 284, 401, 666
SatI GCNGC 2 cut(s) 536, 690
Sau3AI GATC 3 cut(s) 32, 119, 579
SchI GAGTC 2 cut(s) 184, 710
ScrFI CCNGG 1 cut(s) 214
SetI ASST 9 cut(s) 48, 71, 361, 378, 645, 655, 691, 742, 757
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 1 cut(s) 583
SfuI TTCGAA 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 145, 285, 303
SsiI CCGC 4 cut(s) 156, 217, 235, 440
SspI AATATT 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 4 cut(s) 128, 139, 388, 514
TaiI ACGT 1 cut(s) 378
TaqI TCGA 5 cut(s) 118, 142, 162, 196, 444
TasI AATT 3 cut(s) 145, 285, 303
TatI WGTACW 1 cut(s) 249
Tru1I TTAA 6 cut(s) 6, 21, 231, 284, 401, 666
Tru9I TTAA 6 cut(s) 6, 21, 231, 284, 401, 666
TscAI CASTG 1 cut(s) 517
TseI GCWGC 2 cut(s) 535, 689
TspGWI ACGGA 3 cut(s) 81, 279, 301
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.