Rh1AG110800

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008169
Physical Location & Seq
Forward (+)
19208971 .. 19211985
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG110800.1

Sequence Viewer

Length: 786 bp
ATGTTTAAGCCTAAATCCCTTAACGGGTTGAGATCTCTATGGCACCTCAACCATTCCTCATCTGCCAGCTCTTGGTTTTCCCAGTTCTCTCCGTCGTCGTCTTCGTTTGCTCGATCGGACAGTTTCCAGACCGTTCGAAATTACGCCAGCAGTGTCGATGACAGAAATCATATCACTCCAGGGACTCGTCGAGTTCTGGTGCCTCCCAGGCAGGCTGTTGTCATTAAGCGGTGGTTTGGAATGTACTCCAAGACCCTATTATCAGGAGAATATTTCTTAATTCCGTATTTTGATAAAATTGCTTCTGTGCATTGCTTGAAACCCAAGACCATAAATCTTCTGGCCCAGAAAGCTATCACCAAAAACAATGTGGGCCTTACTGTTACTAGCCAGTTAACTCTCAAGATTTTGGAGCCTATGTTAGCTACTTATGCGGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCAGAGTACCCAGTCTGATGCAATTGGTGAACTCACTGTTGAACAGATAATGGAGGATCAGCAAAGCCTCAATCAACACATATTGTCGTTTCTCAACGACAGGATCTGTAGATGGGGCTTGTCTTGTGAGGCGTTTGAGATAAATGACATAGCAGTTCCACATGAGGTGAAGAAAGCTATTGAGGACTTTAAGGCAGCCAAAGCAAAGAGAGCTGCCATACTGGAGTCAGTTGCTGACTTCTTCTCCAAGGCTACTAAGGAAGCTGGTGGGAGAAGAGTGCTGGGAAATTGCTCGTCAGGTTCTGCATCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

261

Amino Acids

28.91

Weight (kDa)

9.45

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 67 - 229 4.5e-21 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 42, 199
AccB7I CCANNNNNTGG 1 cut(s) 72
AccI GTMKAC 1 cut(s) 438
AciI CCGC 2 cut(s) 229, 434
AclWI GGATC 2 cut(s) 534, 581
AfaI GTAC 2 cut(s) 245, 478
AfiI CCNNNNNNNGG 2 cut(s) 24, 72
AgsI TTSAA 2 cut(s) 319, 512
AjnI CCWGG 2 cut(s) 178, 206
AluBI AGCT 6 cut(s) 69, 353, 425, 647, 683, 734
AluI AGCT 6 cut(s) 69, 353, 425, 647, 683, 734
AlwI GGATC 2 cut(s) 534, 581
AlwNI CAGNNNCTG 3 cut(s) 576, 704, 773
AoxI GGCC 2 cut(s) 342, 373
ApeKI GCWGC 2 cut(s) 665, 683
AspS9I GGNCC 2 cut(s) 343, 373
AsuHPI GGTGA 3 cut(s) 349, 509, 649
AsuII TTCGAA 1 cut(s) 136
BanI GGYRCC 2 cut(s) 42, 199
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 670, 677
BccI CCATC 1 cut(s) 576
BciT130I CCWGG 2 cut(s) 180, 208
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 577
BglI GCCNNNNNGGC 1 cut(s) 208
BglII AGATCT 1 cut(s) 32
BisI GCNGC 2 cut(s) 666, 684
BlsI GCNGC 2 cut(s) 667, 685
Bme1390I CCNGG 2 cut(s) 180, 208
BmgT120I GGNCC 2 cut(s) 343, 373
BmiI GGNNCC 3 cut(s) 44, 201, 414
BmrFI CCNGG 2 cut(s) 180, 208
BmrI ACTGGG 2 cut(s) 76, 475
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 2 cut(s) 76, 475
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 2 cut(s) 162, 713
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 179, 206, 717
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 698, 728
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 72
Bse1I ACTGG 4 cut(s) 82, 391, 481, 696
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 180, 208
BseDI CCNNGG 3 cut(s) 179, 206, 717
BseLI CCNNNNNNNGG 2 cut(s) 24, 72
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 4 cut(s) 82, 391, 481, 696
BseXI GCAGC 2 cut(s) 670, 677
BseYI CCCAGC 1 cut(s) 751
Bsh1285I CGRYCG 2 cut(s) 116, 438
BshFI GGCC 2 cut(s) 344, 375
BshNI GGYRCC 2 cut(s) 42, 199
BsiEI CGRYCG 2 cut(s) 116, 438
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 24, 72
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 2 cut(s) 344, 375
Bsp119I TTCGAA 1 cut(s) 136
Bsp143I GATC 4 cut(s) 32, 113, 526, 573
BspACI CCGC 2 cut(s) 229, 434
BspANI GGCC 2 cut(s) 344, 375
BspCNI CTCAG 1 cut(s) 484
BspLI GGNNCC 3 cut(s) 44, 201, 414
BspPI GGATC 2 cut(s) 534, 581
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 2 cut(s) 42, 199
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 4 cut(s) 82, 391, 481, 696
BssECI CCNNGG 3 cut(s) 179, 206, 717
BssMI GATC 4 cut(s) 32, 113, 526, 573
BssT1I CCWWGG 1 cut(s) 717
Bst2UI CCWGG 2 cut(s) 180, 208
Bst4CI ACNGT 4 cut(s) 122, 133, 382, 508
Bst6I CTCTTC 1 cut(s) 739
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 67, 148, 213
BstDEI CTNAG 2 cut(s) 471, 726
BstKTI GATC 4 cut(s) 35, 116, 529, 576
BstMBI GATC 4 cut(s) 32, 113, 526, 573
BstMCI CGRYCG 2 cut(s) 116, 438
BstMWI GCNNNNNNNGC 5 cut(s) 208, 350, 431, 671, 680
BstNI CCWGG 2 cut(s) 180, 208
BstSCI CCNGG 2 cut(s) 178, 206
BstSFI CTRYAG 1 cut(s) 577
BstV1I GCAGC 2 cut(s) 670, 677
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 32, 573
BstYI RGATCY 2 cut(s) 32, 573
BsuRI GGCC 2 cut(s) 344, 375
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 157, 504
Cac8I GCNNGC 3 cut(s) 67, 148, 213
CaiI CAGNNNCTG 3 cut(s) 576, 704, 773
Cfr13I GGNCC 2 cut(s) 343, 373
Csp6I GTAC 2 cut(s) 244, 477
CviAII CATG 1 cut(s) 632
CviQI GTAC 2 cut(s) 244, 477
DdeI CTNAG 2 cut(s) 471, 726
DpnI GATC 4 cut(s) 34, 115, 528, 575
DpnII GATC 4 cut(s) 32, 113, 526, 573
Eam1104I CTCTTC 1 cut(s) 739
EarI CTCTTC 1 cut(s) 739
Eco130I CCWWGG 1 cut(s) 717
EcoRII CCWGG 2 cut(s) 178, 206
EcoT14I CCWWGG 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 717
FaeI CATG 1 cut(s) 635
FaiI YATR 9 cut(s) 40, 171, 332, 419, 432, 551, 620, 633, 689
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 631
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 666, 684
Fsp4HI GCNGC 2 cut(s) 666, 684
FspBI CTAG 1 cut(s) 387
GluI GCNGC 2 cut(s) 666, 684
GsaI CCCAGC 1 cut(s) 755
GsuI CTGGAG 2 cut(s) 162, 713
HaeIII GGCC 2 cut(s) 344, 375
Hin1II CATG 1 cut(s) 635
HincII GTYRAC 2 cut(s) 396, 439
HindII GTYRAC 2 cut(s) 396, 439
HinfI GANTC 2 cut(s) 184, 695
HpaI GTTAAC 1 cut(s) 396
HphI GGTGA 3 cut(s) 349, 509, 649
Hpy166II GTNNAC 3 cut(s) 396, 439, 500
Hpy188I TCNGA 3 cut(s) 118, 474, 487
Hpy188III TCNNGA 3 cut(s) 127, 264, 403
Hpy8I GTNNAC 3 cut(s) 396, 439, 500
Hpy99I CGWCG 3 cut(s) 97, 100, 192
HpyCH4III ACNGT 4 cut(s) 122, 133, 382, 508
HpyCH4V TGCA 3 cut(s) 310, 491, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 208, 350, 431, 671, 680
HpyF3I CTNAG 2 cut(s) 471, 726
Hsp92II CATG 1 cut(s) 635
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 4 cut(s) 32, 113, 526, 573
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 2 cut(s) 670, 677
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 382
MalI GATC 4 cut(s) 34, 115, 528, 575
MboI GATC 4 cut(s) 32, 113, 526, 573
MboII GAAGA 5 cut(s) 93, 329, 652, 703, 756
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 2 cut(s) 32, 573
MluCI AATT 5 cut(s) 139, 279, 297, 492, 757
MlyI GAGTC 2 cut(s) 178, 704
MnlI CCTC 8 cut(s) 56, 67, 213, 517, 548, 592, 628, 646
MseI TTAA 6 cut(s) 6, 21, 225, 278, 395, 660
MspR9I CCNGG 2 cut(s) 180, 208
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 2 cut(s) 180, 208
MwoI GCNNNNNNNGC 5 cut(s) 208, 350, 431, 671, 680
NdeII GATC 4 cut(s) 32, 113, 526, 573
NlaIII CATG 1 cut(s) 635
NlaIV GGNNCC 3 cut(s) 44, 201, 414
NspV TTCGAA 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 2 cut(s) 667, 685
Ple19I CGATCG 1 cut(s) 116
PleI GAGTC 2 cut(s) 178, 703
PpsI GAGTC 2 cut(s) 178, 703
Psp6I CCWGG 2 cut(s) 178, 206
PspFI CCCAGC 1 cut(s) 751
PspGI CCWGG 2 cut(s) 178, 206
PspN4I GGNNCC 3 cut(s) 44, 201, 414
PspPI GGNCC 2 cut(s) 343, 373
PstNI CAGNNNCTG 3 cut(s) 576, 704, 773
PsuI RGATCY 2 cut(s) 32, 573
PvuI CGATCG 1 cut(s) 116
RsaI GTAC 2 cut(s) 245, 478
RsaNI GTAC 2 cut(s) 244, 477
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 6 cut(s) 6, 21, 225, 278, 395, 660
SatI GCNGC 2 cut(s) 666, 684
Sau3AI GATC 4 cut(s) 32, 113, 526, 573
Sau96I GGNCC 2 cut(s) 343, 373
SchI GAGTC 2 cut(s) 178, 704
ScrFI CCNGG 2 cut(s) 180, 208
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 577
SfuI TTCGAA 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 5 cut(s) 139, 279, 297, 492, 757
SsiI CCGC 2 cut(s) 229, 434
SspI AATATT 1 cut(s) 272
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 178, 206
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 4 cut(s) 122, 133, 382, 508
TaqI TCGA 5 cut(s) 112, 136, 156, 190, 438
TasI AATT 5 cut(s) 139, 279, 297, 492, 757
TatI WGTACW 1 cut(s) 243
Tru1I TTAA 6 cut(s) 6, 21, 225, 278, 395, 660
Tru9I TTAA 6 cut(s) 6, 21, 225, 278, 395, 660
TscAI CASTG 2 cut(s) 157, 511
TseI GCWGC 2 cut(s) 665, 683
TspGWI ACGGA 2 cut(s) 81, 273
TspRI CASTG 2 cut(s) 157, 511
Van91I CCANNNNNTGG 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 367
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.