Rh1DG113900

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008169
Physical Location & Seq
Forward (+)
20908959 .. 20917200
8242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG113900.1

Sequence Viewer

Length: 486 bp
ATGACAGAATACTTTTCTACTCGAGTTGTGCAAGCACAGAGTTTTGACATCAATGGCTTATCCGTGCTTTACGCCAAAATTTTGGAGCCTATGTTAGCTACTTATGCGGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCAGAGTACCCAGTCTGATGCAATTGGTGAACTCACTGTTGAACAGATAATGGAGGATCAGCAAAGCCTCAATCAACACATATTGTCATTTCTCAACGACAGGATCTGTAGATGGGGCTTGTCTTGTGAGGCGTTTGAGATAAATGACATAGCAGTTCCACATGAGGTGAAGAAAGCTATTGAGGACTTTAAGGCAGCCAAAGCAAAGAGAGCTGCCATACTGGAGTCAGTTGCTGACTTCTTCTCCAAGGCTACTAAGGAAGCTGGTGGGAGAAGAGGTAAGATTTTGTTCCCTCTACTGTTCTGCATCAAGGTAAACGAAGAACTTGCAGATGTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

161

Amino Acids

17.93

Weight (kDa)

5.1

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 32 - 120 2.2e-09 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 107
AclWI GGATC 2 cut(s) 207, 254
AcsI RAATTY 1 cut(s) 78
AfaI GTAC 1 cut(s) 151
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 4 cut(s) 98, 320, 356, 407
AluI AGCT 4 cut(s) 98, 320, 356, 407
AlwI GGATC 2 cut(s) 207, 254
AlwNI CAGNNNCTG 2 cut(s) 249, 377
Ama87I CYCGRG 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 338, 356
ApoI RAATTY 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 182, 322
AvaI CYCGRG 1 cut(s) 21
BbvI GCAGC 2 cut(s) 343, 350
BccI CCATC 1 cut(s) 249
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 2 cut(s) 339, 357
BlsI GCNGC 2 cut(s) 340, 358
BmeT110I CYCGRG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 87
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 151, 459
BmuI ACTGGG 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 390
BsaXI ACNNNNNCTCC 6 cut(s) 77, 107, 371, 401, 406, 436
Bse1I ACTGG 2 cut(s) 154, 369
BseDI CCNNGG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 2 cut(s) 154, 369
BseXI GCAGC 2 cut(s) 343, 350
Bsh1285I CGRYCG 1 cut(s) 111
BsiEI CGRYCG 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 21
Bsp143I GATC 2 cut(s) 199, 246
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 2 cut(s) 207, 254
BsrI ACTGG 2 cut(s) 154, 369
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 2 cut(s) 199, 246
BssT1I CCWWGG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 181, 444
Bst6I CTCTTC 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 144, 399
BstKTI GATC 2 cut(s) 202, 249
BstMBI GATC 2 cut(s) 199, 246
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 104, 344, 353
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 343, 350
BstX2I RGATCY 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 2 cut(s) 249, 377
Csp6I GTAC 1 cut(s) 150
CviAII CATG 1 cut(s) 305
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 2 cut(s) 144, 399
DpnI GATC 2 cut(s) 201, 248
DpnII GATC 2 cut(s) 199, 246
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 1 cut(s) 308
FaiI YATR 6 cut(s) 92, 105, 224, 293, 306, 362
FatI CATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 339, 357
Fsp4HI GCNGC 2 cut(s) 339, 357
GluI GCNGC 2 cut(s) 339, 357
GsuI CTGGAG 1 cut(s) 386
Hin1II CATG 1 cut(s) 308
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 368
HphI GGTGA 2 cut(s) 182, 322
Hpy166II GTNNAC 3 cut(s) 112, 173, 460
Hpy188I TCNGA 2 cut(s) 147, 160
Hpy8I GTNNAC 3 cut(s) 112, 173, 460
HpyCH4III ACNGT 2 cut(s) 181, 444
HpyCH4V TGCA 4 cut(s) 31, 164, 450, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 344, 353
HpyF3I CTNAG 2 cut(s) 144, 399
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 2 cut(s) 199, 246
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 4 cut(s) 167, 229, 350, 393
Lsp1109I GCAGC 2 cut(s) 343, 350
LweI GCATC 2 cut(s) 151, 459
MalI GATC 2 cut(s) 201, 248
MboI GATC 2 cut(s) 199, 246
MboII GAAGA 4 cut(s) 325, 376, 429, 476
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 246
MluCI AATT 2 cut(s) 78, 165
MlyI GAGTC 1 cut(s) 377
MnlI CCTC 8 cut(s) 190, 221, 265, 301, 319, 413, 447, 474
MseI TTAA 1 cut(s) 333
MunI CAATTG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 104, 344, 353
NdeII GATC 2 cut(s) 199, 246
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 87
PaeR7I CTCGAG 1 cut(s) 21
PkrI GCNGC 2 cut(s) 340, 358
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 87
PspXI VCTCGAGB 1 cut(s) 21
PstNI CAGNNNCTG 2 cut(s) 249, 377
PsuI RGATCY 1 cut(s) 246
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 339, 357
Sau3AI GATC 2 cut(s) 199, 246
SchI GAGTC 1 cut(s) 377
SetI ASST 8 cut(s) 100, 312, 322, 358, 409, 424, 459, 485
SfaNI GCATC 2 cut(s) 151, 459
SfcI CTRYAG 1 cut(s) 250
Sfr274I CTCGAG 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 2 cut(s) 78, 165
SsiI CCGC 1 cut(s) 107
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 181, 444
TaqI TCGA 2 cut(s) 22, 111
TasI AATT 2 cut(s) 78, 165
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 1 cut(s) 184
TseI GCWGC 2 cut(s) 338, 356
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 184
XapI RAATTY 1 cut(s) 78
XhoI CTCGAG 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.