Rw1G004850

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008169
Physical Location & Seq
Forward (+)
9294572 .. 9296348
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004850.1

Sequence Viewer

Length: 582 bp
ATGTTTAAGCCTAAATCCCTTAACGCGTTGAGATCTCTGAGGCACCTCAACCATTCCTCATCTGCCAGCTCTTGGTTATCCCAGTTGTCTCCGTCGTCGTCGTCTTCTTCGTTTGCTCGATCGGACAGTTTCCAGACCGTTCGAAATTACGCCAGCGGTGTCGATGACAGAAATCATATCACTTTTGGGACTCGTCGAGTTCTGGTGCCTCCCAGGCGGGCTGTTGTCATTAAGCGGTGGTTTGGAATGTACTCCAAGACCCTATTATCTGGAGAATATTTCTTAATTCCGTATTTTGATAAAATTGCTTCCGTGCATTGCTTGAAACCCAAGACCATAAATCTTCTTGCCCAGAAAGCTATAACCAAAAACAACGTGAGCCTTACTGTTACTGGCCATTTAACACTCAAGATTGTGGAGCCTCTGTTAGCCTCTTATGCGGTCGACAATCCCATTGATAAGGCTACTGGTCTTGCTCAGAGTATTCTGTGTGATGTAGTTGGTGAACTCACTGTTGAACAGATAATGAAAGAGCAGCGAAGCCTCAATCTACACATATCGGTAGGTTTATCAGCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

193

Amino Acids

21.33

Weight (kDa)

9.87

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 69 - 183 9.3e-13 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 42, 205
AccB7I CCANNNNNTGG 1 cut(s) 72
AccI GTMKAC 1 cut(s) 444
AccII CGCG 1 cut(s) 26
AciI CCGC 4 cut(s) 156, 217, 235, 440
AcoI YGGCCR 1 cut(s) 394
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 325, 518
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 2 cut(s) 69, 359
AluI AGCT 2 cut(s) 69, 359
Alw26I GTCTC 1 cut(s) 93
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 535
AsuHPI GGTGA 1 cut(s) 515
AsuII TTCGAA 1 cut(s) 142
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 2 cut(s) 42, 205
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 547
BciT130I CCWGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 93
BglI GCCNNNNNGGC 1 cut(s) 214
BglII AGATCT 1 cut(s) 32
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
Bme1390I CCNGG 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 44, 207, 420
BmrFI CCNGG 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 3 cut(s) 82, 397, 472
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 29, 491
BseNI ACTGG 3 cut(s) 82, 397, 472
BseXI GCAGC 1 cut(s) 547
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 2 cut(s) 122, 444
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 2 cut(s) 42, 205
BsiEI CGRYCG 2 cut(s) 122, 444
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 142
Bsp143I GATC 2 cut(s) 32, 119
BspACI CCGC 4 cut(s) 156, 217, 235, 440
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 2 cut(s) 30, 490
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 3 cut(s) 44, 207, 420
BspT104I TTCGAA 1 cut(s) 142
BspT107I GGYRCC 2 cut(s) 42, 205
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 3 cut(s) 82, 397, 472
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 2 cut(s) 32, 119
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 4 cut(s) 128, 139, 388, 514
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 3 cut(s) 67, 154, 219
BstDEI CTNAG 2 cut(s) 38, 477
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 2 cut(s) 35, 122
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 32, 119
BstMCI CGRYCG 2 cut(s) 122, 444
BstMWI GCNNNNNNNGC 3 cut(s) 214, 356, 437
BstNI CCWGG 1 cut(s) 214
BstNSI RCATGY 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 212
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 547
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 67, 154, 219
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 576
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 38, 477
DpnI GATC 2 cut(s) 34, 121
DpnII GATC 2 cut(s) 32, 119
EaeI YGGCCR 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 212
FaeI CATG 1 cut(s) 579
FaiI YATR 6 cut(s) 177, 338, 362, 438, 557, 577
FaqI GGGAC 1 cut(s) 202
FatI CATG 1 cut(s) 575
FauI CCCGC 1 cut(s) 210
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 1 cut(s) 536
Fsp4HI GCNGC 1 cut(s) 536
GluI GCNGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 396
Hin1II CATG 1 cut(s) 579
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 445, 506
Hpy188I TCNGA 3 cut(s) 39, 124, 480
Hpy188III TCNNGA 3 cut(s) 133, 270, 409
Hpy8I GTNNAC 2 cut(s) 445, 506
Hpy99I CGWCG 4 cut(s) 97, 100, 103, 198
HpyCH4III ACNGT 4 cut(s) 128, 139, 388, 514
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 356, 437
HpyF3I CTNAG 2 cut(s) 38, 477
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 1 cut(s) 579
Kzo9I GATC 2 cut(s) 32, 119
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 1 cut(s) 547
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 34, 121
MboI GATC 2 cut(s) 32, 119
MboII GAAGA 3 cut(s) 96, 99, 335
MflI RGATCY 1 cut(s) 32
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 3 cut(s) 145, 285, 303
MluI ACGCGT 1 cut(s) 24
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 7 cut(s) 33, 56, 67, 219, 432, 442, 554
Mox20I TGGCCA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 396
MseI TTAA 6 cut(s) 6, 21, 231, 284, 401, 580
Msp20I TGGCCA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 214
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 214, 356, 437
NdeII GATC 2 cut(s) 32, 119
NlaIII CATG 1 cut(s) 579
NlaIV GGNNCC 3 cut(s) 44, 207, 420
NspI RCATGY 1 cut(s) 579
NspV TTCGAA 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 1 cut(s) 537
Ple19I CGATCG 1 cut(s) 122
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 3 cut(s) 44, 207, 420
PsuI RGATCY 1 cut(s) 32
PvuI CGATCG 1 cut(s) 122
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SalI GTCGAC 1 cut(s) 443
SaqAI TTAA 6 cut(s) 6, 21, 231, 284, 401, 580
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 2 cut(s) 32, 119
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 214
SetI ASST 5 cut(s) 48, 71, 361, 378, 568
SfuI TTCGAA 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 145, 285, 303
SsiI CCGC 4 cut(s) 156, 217, 235, 440
SspI AATATT 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 4 cut(s) 128, 139, 388, 514
TaiI ACGT 1 cut(s) 378
TaqI TCGA 5 cut(s) 118, 142, 162, 196, 444
TasI AATT 3 cut(s) 145, 285, 303
TatI WGTACW 1 cut(s) 249
Tru1I TTAA 6 cut(s) 6, 21, 231, 284, 401, 580
Tru9I TTAA 6 cut(s) 6, 21, 231, 284, 401, 580
TscAI CASTG 1 cut(s) 517
TseI GCWGC 1 cut(s) 535
TspDTI ATGAA 1 cut(s) 542
TspGWI ACGGA 3 cut(s) 81, 279, 301
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 72
XceI RCATGY 1 cut(s) 579
XmiI GTMKAC 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.