Rw1G008710

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008169
Physical Location & Seq
Forward (+)
19004424 .. 19020204
15781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008710.1

Sequence Viewer

Length: 1170 bp
ATGACAGGACAGTTTCGATCTGCCTTCGCAGCTCCAATCCCAGCTGTTGCGTCAGCAAGACAGGTTGAGCTATGTGCCATCAAGGAAGGCTTAAAACTGGTGGCCACAATGCAGTTCTCTCCGTCGTCGTCTTCGTTTGCGCGATCGGACAGTTTCCAGACCGTTCGAAATTACGCCAGCAGTGTCGATGACAGAAATCATATCACTCCAGGGACTCGTCGAGTTCTGGTGCCTCCCAGGCAGGCTGTTGTCATTAAGCAGTGGTTTGGAATGTACTCCAAGACCCTATTATCTGGAGAATATTTCTTAATTCCATATTTTGATAAAATTGCTTCTGTGCATTGCTTGAAACCCAAGACCATAAATCTTCTGGCCCAGAAAGCTATCACCAAAAACAATGTGGGCCTTACTGTTATTAGCCTATTAACTCTCAAGATTTTGGAGCCTATGTTAGCTACTTATGCGGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCAGAGTACCCAGTCTGATGCAATTGGTGAACTCACTGTCGAACAGATAATGGAGGATCAGCAAAGCCTCAATCAACACATATTGTCATTTCTCAACGACAGGATCTGTAGATGGGGCTTGTCTTGTGAGGCGTTTGAGATAATCGATAACCACATTTTCGGTACAAAATGCCCACCCCTAGCAGTTCCACATGAGGTGAAGAAAGCTATTGAGGACTTTAAGGCAGCCAAAGCAAAGAGAGCTGCCATACTGGCGTCAGGTACGGAACTCTTTAACTCCAAGTATTTGAGTCCCAGTAATCCAAAATATTTTCTTAATTTGAAGCTATTTTCAGGTAGAGAGCTTGTTAATTCGGCTCTAGATTTCACCATAATGTGCAAGACCAAGAAAACTGTTCTTAAAATATCTCTCAGAAATAAATTACTCCAGCAATATATCCATGACCTAAGTCCGAACAAAGTGGAGGAAATATTTATTGATGACAAAGTATTCTGCTACTGCACTTGTACTCGTGTTCTACTACTGCACTCATCATCGCCTAATCCTGCTACTGCACTAATCCAATCCTGCTACTGCACTGCACTCATACTCATCCAAATCTCCAATCCCCAAACAACAAACTCAATACTTCCTGACTTTCTTCGATTGAGTCCGACTTCGACTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

389

Amino Acids

43.2

Weight (kDa)

9.08

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 77 - 215 2.2e-13 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 468
AccII CGCG 1 cut(s) 142
AciI CCGC 1 cut(s) 464
AclWI GGATC 2 cut(s) 564, 611
AcoI YGGCCR 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 755
AfaI GTAC 5 cut(s) 275, 508, 664, 763, 1009
AgsI TTSAA 2 cut(s) 349, 823
AjnI CCWGG 2 cut(s) 208, 236
AluBI AGCT 9 cut(s) 32, 44, 70, 383, 455, 707, 743, 826, 844
AluI AGCT 9 cut(s) 32, 44, 70, 383, 455, 707, 743, 826, 844
AlwI GGATC 2 cut(s) 564, 611
AlwNI CAGNNNCTG 1 cut(s) 606
AoxI GGCC 3 cut(s) 102, 372, 403
ApeKI GCWGC 3 cut(s) 29, 725, 743
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 373, 403
AsuHPI GGTGA 4 cut(s) 379, 539, 709, 859
AsuII TTCGAA 1 cut(s) 166
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 229
BauI CACGAG 1 cut(s) 1011
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 41, 730, 737
BccI CCATC 2 cut(s) 86, 606
BciT130I CCWGG 2 cut(s) 210, 238
BfaI CTAG 2 cut(s) 680, 860
BfmI CTRYAG 1 cut(s) 607
BglI GCCNNNNNGGC 2 cut(s) 238, 752
BisI GCNGC 3 cut(s) 30, 726, 744
BlsI GCNGC 3 cut(s) 31, 727, 745
Bme1390I CCNGG 2 cut(s) 210, 238
BmgT120I GGNCC 2 cut(s) 373, 403
BmiI GGNNCC 2 cut(s) 231, 444
BmrFI CCNGG 2 cut(s) 210, 238
BmrI ACTGGG 2 cut(s) 505, 789
BmsI GCATC 1 cut(s) 508
BmuI ACTGGG 2 cut(s) 505, 789
BoxI GACNNNNGTC 1 cut(s) 948
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 3 cut(s) 192, 315, 911
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 416
Bsa29I ATCGAT 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 755
BsaJI CCNNGG 2 cut(s) 209, 236
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bse1I ACTGG 4 cut(s) 102, 511, 756, 795
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 2 cut(s) 210, 238
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 2 cut(s) 209, 236
BseGI GGATG 1 cut(s) 1092
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 2 cut(s) 515, 925
BseNI ACTGG 4 cut(s) 102, 511, 756, 795
BseXI GCAGC 3 cut(s) 41, 730, 737
BseYI CCCAGC 1 cut(s) 40
BsgI GTGCAG 5 cut(s) 985, 1010, 1038, 1060, 1065
Bsh1236I CGCG 1 cut(s) 142
Bsh1285I CGRYCG 2 cut(s) 146, 468
BshFI GGCC 3 cut(s) 104, 374, 405
BshNI GGYRCC 1 cut(s) 229
BshVI ATCGAT 1 cut(s) 645
BsiEI CGRYCG 2 cut(s) 146, 468
BslFI GGGAC 2 cut(s) 226, 777
BsmFI GGGAC 2 cut(s) 226, 777
BsnI GGCC 3 cut(s) 104, 374, 405
Bsp119I TTCGAA 1 cut(s) 166
Bsp143I GATC 4 cut(s) 17, 143, 556, 603
BspACI CCGC 1 cut(s) 464
BspANI GGCC 3 cut(s) 104, 374, 405
BspCNI CTCAG 2 cut(s) 514, 924
BspDI ATCGAT 1 cut(s) 645
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 231, 444
BspPI GGATC 2 cut(s) 564, 611
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 4 cut(s) 102, 511, 756, 795
BssECI CCNNGG 2 cut(s) 209, 236
BssMI GATC 4 cut(s) 17, 143, 556, 603
BssNI GRCGYC 1 cut(s) 755
BssSI CACGAG 1 cut(s) 1011
Bst2BI CACGAG 1 cut(s) 1011
Bst2UI CCWGG 2 cut(s) 210, 238
Bst4CI ACNGT 6 cut(s) 12, 152, 163, 412, 538, 895
BstACI GRCGYC 1 cut(s) 755
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 178, 243
BstDEI CTNAG 3 cut(s) 501, 911, 947
BstF5I GGATG 1 cut(s) 1092
BstFNI CGCG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 4 cut(s) 20, 146, 559, 606
BstMBI GATC 4 cut(s) 17, 143, 556, 603
BstMCI CGRYCG 2 cut(s) 146, 468
BstMWI GCNNNNNNNGC 7 cut(s) 29, 238, 380, 461, 731, 740, 752
BstNI CCWGG 2 cut(s) 210, 238
BstPAI GACNNNNGTC 1 cut(s) 948
BstSCI CCNGG 2 cut(s) 208, 236
BstSFI CTRYAG 1 cut(s) 607
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 3 cut(s) 41, 730, 737
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 603
BstYI RGATCY 1 cut(s) 603
Bsu15I ATCGAT 1 cut(s) 645
BsuRI GGCC 3 cut(s) 104, 374, 405
BsuTUI ATCGAT 1 cut(s) 645
BtgZI GCGATG 1 cut(s) 1020
BtsCI GGATG 1 cut(s) 1092
BtsI GCAGTG 3 cut(s) 187, 266, 1077
BtsIMutI CAGTG 4 cut(s) 187, 266, 534, 1077
Cac8I GCNNGC 2 cut(s) 178, 243
CaiI CAGNNNCTG 1 cut(s) 606
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 373, 403
ClaI ATCGAT 1 cut(s) 645
CseI GACGC 2 cut(s) 39, 744
Csp6I GTAC 5 cut(s) 274, 507, 663, 762, 1008
CviAII CATG 2 cut(s) 692, 941
CviQI GTAC 5 cut(s) 274, 507, 663, 762, 1008
DdeI CTNAG 3 cut(s) 501, 911, 947
DpnI GATC 4 cut(s) 19, 145, 558, 605
DpnII GATC 4 cut(s) 17, 143, 556, 603
EaeI YGGCCR 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 208, 236
FaeI CATG 2 cut(s) 695, 944
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 2 cut(s) 226, 777
FatI CATG 2 cut(s) 691, 940
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 3 cut(s) 30, 726, 744
FokI GGATG 1 cut(s) 1079
Fsp4HI GCNGC 3 cut(s) 30, 726, 744
FspBI CTAG 2 cut(s) 680, 860
GlaI GCGC 1 cut(s) 141
GluI GCNGC 3 cut(s) 30, 726, 744
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 3 cut(s) 192, 315, 911
HaeIII GGCC 3 cut(s) 104, 374, 405
HgaI GACGC 2 cut(s) 39, 744
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 755
Hin1II CATG 2 cut(s) 695, 944
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 4 cut(s) 214, 790, 1150, 1162
HphI GGTGA 4 cut(s) 379, 539, 709, 859
Hpy166II GTNNAC 2 cut(s) 469, 530
Hpy188I TCNGA 6 cut(s) 148, 504, 517, 914, 954, 1155
Hpy188III TCNNGA 5 cut(s) 157, 294, 433, 860, 1133
Hpy8I GTNNAC 2 cut(s) 469, 530
Hpy99I CGWCG 3 cut(s) 127, 130, 222
HpyAV CCTTC 2 cut(s) 34, 80
HpyCH4III ACNGT 6 cut(s) 12, 152, 163, 412, 538, 895
HpyCH4V TGCA 9 cut(s) 112, 340, 521, 879, 1002, 1027, 1055, 1077, 1082
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 238, 380, 461, 731, 740, 752
HpyF3I CTNAG 3 cut(s) 501, 911, 947
Hsp92I GRCGYC 1 cut(s) 755
Hsp92II CATG 2 cut(s) 695, 944
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 4 cut(s) 17, 143, 556, 603
LmnI GCTCC 2 cut(s) 37, 442
Lsp1109I GCAGC 3 cut(s) 41, 730, 737
LweI GCATC 1 cut(s) 508
MaeI CTAG 2 cut(s) 680, 860
MalI GATC 4 cut(s) 19, 145, 558, 605
MboI GATC 4 cut(s) 17, 143, 556, 603
MboII GAAGA 4 cut(s) 123, 359, 712, 1133
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 1 cut(s) 603
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 7 cut(s) 169, 309, 327, 522, 817, 850, 920
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 4 cut(s) 208, 799, 1156, 1159
MnlI CCTC 7 cut(s) 243, 547, 578, 622, 688, 706, 958
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
MseI TTAA 9 cut(s) 92, 255, 308, 425, 720, 774, 816, 849, 900
MslI CAYNNNNRTG 1 cut(s) 872
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 210, 238
MunI CAATTG 1 cut(s) 522
MvaI CCWGG 2 cut(s) 210, 238
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 7 cut(s) 29, 238, 380, 461, 731, 740, 752
NdeII GATC 4 cut(s) 17, 143, 556, 603
NlaIII CATG 2 cut(s) 695, 944
NlaIV GGNNCC 2 cut(s) 231, 444
NspV TTCGAA 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PkrI GCNGC 3 cut(s) 31, 727, 745
Ple19I CGATCG 1 cut(s) 146
PleI GAGTC 4 cut(s) 208, 798, 1156, 1158
PpsI GAGTC 4 cut(s) 208, 798, 1156, 1158
PshAI GACNNNNGTC 1 cut(s) 948
Psp6I CCWGG 2 cut(s) 208, 236
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 208, 236
PspN4I GGNNCC 2 cut(s) 231, 444
PspPI GGNCC 2 cut(s) 373, 403
PstNI CAGNNNCTG 1 cut(s) 606
PsuI RGATCY 1 cut(s) 603
PvuI CGATCG 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 5 cut(s) 275, 508, 664, 763, 1009
RsaNI GTAC 5 cut(s) 274, 507, 663, 762, 1008
RseI CAYNNNNRTG 1 cut(s) 872
SalI GTCGAC 1 cut(s) 467
SaqAI TTAA 9 cut(s) 92, 255, 308, 425, 720, 774, 816, 849, 900
SatI GCNGC 3 cut(s) 30, 726, 744
Sau3AI GATC 4 cut(s) 17, 143, 556, 603
Sau96I GGNCC 2 cut(s) 373, 403
SchI GAGTC 4 cut(s) 208, 799, 1156, 1159
ScrFI CCNGG 2 cut(s) 210, 238
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 1 cut(s) 607
SfuI TTCGAA 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 7 cut(s) 169, 309, 327, 522, 817, 850, 920
SsiI CCGC 1 cut(s) 464
SspI AATATT 3 cut(s) 302, 809, 972
SspMI CTAG 2 cut(s) 680, 860
StyD4I CCNGG 2 cut(s) 208, 236
TaaI ACNGT 6 cut(s) 12, 152, 163, 412, 538, 895
TaqI TCGA 9 cut(s) 16, 166, 186, 220, 468, 540, 645, 1144, 1160
TasI AATT 7 cut(s) 169, 309, 327, 522, 817, 850, 920
TatI WGTACW 2 cut(s) 273, 1007
Tru1I TTAA 9 cut(s) 92, 255, 308, 425, 720, 774, 816, 849, 900
Tru9I TTAA 9 cut(s) 92, 255, 308, 425, 720, 774, 816, 849, 900
TscAI CASTG 4 cut(s) 187, 266, 541, 1084
TseI GCWGC 3 cut(s) 29, 725, 743
TspGWI ACGGA 2 cut(s) 111, 779
TspRI CASTG 4 cut(s) 187, 266, 541, 1084
XbaI TCTAGA 1 cut(s) 859
XcmI CCANNNNNNNNNTGG 2 cut(s) 367, 397
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 2 cut(s) 680, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.