Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002634.1

Orthogroup ID

OG0008169

Physical Location & Seq

Genomic Coordinates Reverse (-)

65838 .. 69343

Gene Structure 3506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002634.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgtttaagcctaaatcccttaacgcgttgagatctctgaggcacctcaactattcctcatcttccagctcttggttatcccagttgtctccgtcgtcgtcgtcttcttcgtttgctcgatcggacagtttccagaccgttcgaaattacgccagcggtgtcgatgacagaaatcatatcacttttgggactcgtcgagttctggtgcctcccaggcgggctgttgtcattaagcggtggtttggaatgtactccaagaccctattatctggagaatatttcttaattccgtattttgataaaattgcttccgtgcattgcttgaaacccaagaccataaatcttcttgcccagaaagctataaccaaaaacaacgtgagccttactgttactggccatttaacactcaagattgtggagcctctgttagcctcttatgcggtcgacaatcccattgataaggctactggtcttgctcagagtattctgtgtgatgtagttggtgaactcactgttgaacagataatgaaagagcagcaaagcctcaatctacacatatcgtcatttctcaacgacaggatctgtagatggggcttgtcttgtgaggcatttgagataaatgacatagcacttccacatgaggtgaagaaagctattgaggactttaaggcaaccaaagcaaagagagctgccatactggagtcagttgctgacttcttctccaaggctactaaggaagctggtgggagacgaggttctccatcaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

256

Amino Acids

28.41

Weight (kDa)

9.65

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008169)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323811 RchiOBHm_Chr1g0330671
rosa_multiflora	Rmu_sc0002634.1_g000009 Rmu_sc0004401.1_g000005
rosa_roxburghii	Rroxscaffold_4G00319770
rosa_rugosa	Rorug01G0090400 Rorug01G0090400
rosa_samantha	Rh1AG057000 Rh1AG108800 Rh1AG110000 Rh1AG110800 Rh1BG048000 Rh1CG058300 Rh1CG104700 Rh1CG105700 Rh1DG062000 Rh1DG111600 Rh1DG111700 Rh1DG113900 Rh1DG114500
rosa_wichuraiana	Rw0G003030 Rw1G004850 Rw1G008710 Rw1G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	42, 205
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	26
AciI	CCGC	4 cut(s)	156, 217, 235, 440
AclWI	GGATC	1 cut(s)	587
AcoI	YGGCCR	1 cut(s)	394
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	325, 518
AjnI	CCWGG	1 cut(s)	212
AloI	GAACNNNNNNTCC	2 cut(s)	739, 771
AluBI	AGCT	5 cut(s)	69, 359, 653, 689, 740
AluI	AGCT	5 cut(s)	69, 359, 653, 689, 740
Alw26I	GTCTC	2 cut(s)	93, 742
AlwI	GGATC	1 cut(s)	587
AlwNI	CAGNNNCTG	2 cut(s)	582, 710
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	535, 689
AsuHPI	GGTGA	2 cut(s)	515, 655
AsuII	TTCGAA	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	396
BanI	GGYRCC	2 cut(s)	42, 205
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	547, 676
BccI	CCATC	2 cut(s)	582, 769
BciT130I	CCWGG	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	93, 742
BfmI	CTRYAG	1 cut(s)	583
BglI	GCCNNNNNGGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	2 cut(s)	536, 690
BlsI	GCNGC	2 cut(s)	537, 691
Bme1390I	CCNGG	1 cut(s)	214
BmiI	GGNNCC	3 cut(s)	44, 207, 420
BmrFI	CCNGG	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	2 cut(s)	291, 719
Bpu14I	TTCGAA	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	212, 723
BsaXI	ACNNNNNCTCC	6 cut(s)	410, 440, 704, 734, 739, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	4 cut(s)	82, 397, 472, 702
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	212, 723
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	29, 491
BseNI	ACTGG	4 cut(s)	82, 397, 472, 702
BseXI	GCAGC	2 cut(s)	547, 676
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	2 cut(s)	122, 444
BshFI	GGCC	1 cut(s)	396
BshNI	GGYRCC	2 cut(s)	42, 205
BsiEI	CGRYCG	2 cut(s)	122, 444
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	93, 742
BsmBI	CGTCTC	1 cut(s)	742
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	32, 119, 579
BspACI	CCGC	4 cut(s)	156, 217, 235, 440
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	2 cut(s)	30, 490
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	3 cut(s)	44, 207, 420
BspPI	GGATC	1 cut(s)	587
BspT104I	TTCGAA	1 cut(s)	142
BspT107I	GGYRCC	2 cut(s)	42, 205
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	4 cut(s)	82, 397, 472, 702
BssECI	CCNNGG	2 cut(s)	212, 723
BssMI	GATC	3 cut(s)	32, 119, 579
BssT1I	CCWWGG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	4 cut(s)	128, 139, 388, 514
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	154, 219
BstDEI	CTNAG	3 cut(s)	38, 477, 732
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	3 cut(s)	35, 122, 582
BstMAI	GTCTC	2 cut(s)	93, 742
BstMBI	GATC	3 cut(s)	32, 119, 579
BstMCI	CGRYCG	2 cut(s)	122, 444
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 356, 437, 677, 686
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	583
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	547, 676
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	32, 579
BstYI	RGATCY	2 cut(s)	32, 579
BsuRI	GGCC	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	2 cut(s)	154, 219
CaiI	CAGNNNCTG	2 cut(s)	582, 710
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	1 cut(s)	638
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	38, 477, 732
DpnI	GATC	3 cut(s)	34, 121, 581
DpnII	GATC	3 cut(s)	32, 119, 579
EaeI	YGGCCR	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	723
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	723
Esp3I	CGTCTC	1 cut(s)	742
FaeI	CATG	1 cut(s)	641
FaiI	YATR	8 cut(s)	177, 338, 362, 438, 557, 626, 639, 695
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	1 cut(s)	637
FauI	CCCGC	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	536, 690
Fsp4HI	GCNGC	2 cut(s)	536, 690
GluI	GCNGC	2 cut(s)	536, 690
GsuI	CTGGAG	2 cut(s)	291, 719
HaeIII	GGCC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	641
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	2 cut(s)	190, 701
HphI	GGTGA	2 cut(s)	515, 655
Hpy166II	GTNNAC	2 cut(s)	445, 506
Hpy188I	TCNGA	3 cut(s)	39, 124, 480
Hpy188III	TCNNGA	3 cut(s)	133, 270, 409
Hpy8I	GTNNAC	2 cut(s)	445, 506
Hpy99I	CGWCG	4 cut(s)	97, 100, 103, 198
HpyCH4III	ACNGT	4 cut(s)	128, 139, 388, 514
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 356, 437, 677, 686
HpyF3I	CTNAG	3 cut(s)	38, 477, 732
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	641
Kzo9I	GATC	3 cut(s)	32, 119, 579
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	2 cut(s)	547, 676
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	3 cut(s)	34, 121, 581
MboI	GATC	3 cut(s)	32, 119, 579
MboII	GAAGA	6 cut(s)	54, 96, 99, 335, 658, 709
MflI	RGATCY	2 cut(s)	32, 579
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	3 cut(s)	145, 285, 303
MluI	ACGCGT	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	184, 710
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	6 cut(s)	6, 21, 231, 284, 401, 666
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	5 cut(s)	214, 356, 437, 677, 686
NdeII	GATC	3 cut(s)	32, 119, 579
NlaIII	CATG	1 cut(s)	641
NlaIV	GGNNCC	3 cut(s)	44, 207, 420
NspV	TTCGAA	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	537, 691
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	2 cut(s)	184, 709
PpsI	GAGTC	2 cut(s)	184, 709
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	44, 207, 420
PstNI	CAGNNNCTG	2 cut(s)	582, 710
PsuI	RGATCY	2 cut(s)	32, 579
PvuI	CGATCG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	6 cut(s)	6, 21, 231, 284, 401, 666
SatI	GCNGC	2 cut(s)	536, 690
Sau3AI	GATC	3 cut(s)	32, 119, 579
SchI	GAGTC	2 cut(s)	184, 710
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	9 cut(s)	48, 71, 361, 378, 645, 655, 691, 742, 757
SfcI	CTRYAG	1 cut(s)	583
SfuI	TTCGAA	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	145, 285, 303
SsiI	CCGC	4 cut(s)	156, 217, 235, 440
SspI	AATATT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	4 cut(s)	128, 139, 388, 514
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	5 cut(s)	118, 142, 162, 196, 444
TasI	AATT	3 cut(s)	145, 285, 303
TatI	WGTACW	1 cut(s)	249
Tru1I	TTAA	6 cut(s)	6, 21, 231, 284, 401, 666
Tru9I	TTAA	6 cut(s)	6, 21, 231, 284, 401, 666
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	2 cut(s)	535, 689
TspDTI	ATGAA	1 cut(s)	542
TspGWI	ACGGA	3 cut(s)	81, 279, 301
TspRI	CASTG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.