Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008169

Physical Location & Seq

Genomic Coordinates Forward (+)

19922825 .. 19930394

Gene Structure 7570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTTAAGCCTAAATCCCTTAATGGGTTGAGATCTCTATGGCACCTCAACCATTCCTCATCCGCCAGCTCTTGGTTTTCCCAGTTCTCTCCGTCGTCGTCTTCGTTTGCTCGATCGGACAGTTTCCAGACCGTTCGAAATTACGCCAGCAGTGTCGATGACAGAAATCATATCACTCCAGGGACTCGTCGAGTTCTGGTGCCTCCCAGGCAGGCTGTTGTCATTAAGCGGTGGTTTGGAATGTACTCCAAGACCCTATTATCTGGAGAATATTTCTTAATTCCGTATTTTGATAAAATTGCTTCTCTGCATTGCTTGAAACCCAAGACCATAAATCTTCTGGCCCAGAAAGCTATCACCAAAAACAATGTGGACCTTACTGTTACTAGCCAGTTAACTCTCAAGATTTTGGACCCTATGTTAGCTACTTATGCAGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCAGAGTACCCAGTCTGATGCAATTGGTGAACTCACTGTTGAACAGATAATGGAGGATCAGCAAAGCCTCAATCAACACATATTGTCATTTCTCAATGACAGGATCTGTAGATGGGGCTTGTCTTGTGAGGCGTTTGAGATAAATGACATATCAGTTCCACATGAGGTGAAGAAAGCTATTGAGGACTTTAAGGCAGCCAAAGCAAAGAGAGCTGCCATACTGGAGTCAGTTGCTGACTTCTTCTCCAAGGCTACTAAGGAAGCTGGTGGGAGAAGAGGATCGGCTCGATCTGGTGTCGATGGTGCAGGATGCCACTGTTTTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

265

Amino Acids

29.37

Weight (kDa)

9.18

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	67 - 229	7.1e-22	SPFH domain / Band 7 family
Band_7_1	PF13421	162 - 220	8.6e-06	SPFH domain-Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008169)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323811 RchiOBHm_Chr1g0330671
rosa_multiflora	Rmu_sc0002634.1_g000009 Rmu_sc0004401.1_g000005
rosa_roxburghii	Rroxscaffold_4G00319770
rosa_rugosa	Rorug01G0090400 Rorug01G0090400
rosa_samantha	Rh1AG057000 Rh1AG108800 Rh1AG110000 Rh1AG110800 Rh1BG048000 Rh1CG058300 Rh1CG104700 Rh1CG105700 Rh1DG062000 Rh1DG111600 Rh1DG111700 Rh1DG113900 Rh1DG114500
rosa_wichuraiana	Rw0G003030 Rw1G004850 Rw1G008710 Rw1G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	42, 199
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	2 cut(s)	63, 229
AclWI	GGATC	3 cut(s)	534, 581, 757
AfaI	GTAC	2 cut(s)	245, 478
AfiI	CCNNNNNNNGG	2 cut(s)	24, 72
AgsI	TTSAA	2 cut(s)	319, 512
AjnI	CCWGG	2 cut(s)	178, 206
AluBI	AGCT	6 cut(s)	69, 353, 425, 647, 683, 734
AluI	AGCT	6 cut(s)	69, 353, 425, 647, 683, 734
AlwI	GGATC	3 cut(s)	534, 581, 757
AlwNI	CAGNNNCTG	2 cut(s)	576, 704
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	665, 683
AspS9I	GGNCC	3 cut(s)	343, 373, 412
AsuHPI	GGTGA	3 cut(s)	349, 509, 649
AsuII	TTCGAA	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	373, 412
BanI	GGYRCC	2 cut(s)	42, 199
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	670, 677
BccI	CCATC	2 cut(s)	576, 764
BciT130I	CCWGG	2 cut(s)	180, 208
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	577
BglI	GCCNNNNNGGC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	2 cut(s)	666, 684
BlsI	GCNGC	2 cut(s)	667, 685
Bme1390I	CCNGG	2 cut(s)	180, 208
Bme18I	GGWCC	2 cut(s)	373, 412
BmgT120I	GGNCC	3 cut(s)	343, 373, 412
BmiI	GGNNCC	3 cut(s)	44, 201, 414
BmrFI	CCNGG	2 cut(s)	180, 208
BmrI	ACTGGG	2 cut(s)	76, 475
BmsI	GCATC	2 cut(s)	478, 770
BmuI	ACTGGG	2 cut(s)	76, 475
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	3 cut(s)	162, 285, 713
Bpu14I	TTCGAA	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	386
BsaJI	CCNNGG	3 cut(s)	179, 206, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	698, 728
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 72
Bse1I	ACTGG	4 cut(s)	82, 391, 481, 696
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	180, 208
BseDI	CCNNGG	3 cut(s)	179, 206, 717
BseGI	GGATG	2 cut(s)	59, 785
BseLI	CCNNNNNNNGG	2 cut(s)	24, 72
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	4 cut(s)	82, 391, 481, 696
BseXI	GCAGC	2 cut(s)	670, 677
BsgI	GTGCAG	1 cut(s)	795
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	2 cut(s)	42, 199
BsiEI	CGRYCG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	24, 72
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	136
Bsp143I	GATC	6 cut(s)	32, 113, 526, 573, 749, 758
BspACI	CCGC	2 cut(s)	63, 229
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	44, 201, 414
BspPI	GGATC	3 cut(s)	534, 581, 757
BspT104I	TTCGAA	1 cut(s)	136
BspT107I	GGYRCC	2 cut(s)	42, 199
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	4 cut(s)	82, 391, 481, 696
BssECI	CCNNGG	3 cut(s)	179, 206, 717
BssMI	GATC	6 cut(s)	32, 113, 526, 573, 749, 758
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	180, 208
Bst4CI	ACNGT	5 cut(s)	122, 133, 382, 508, 788
Bst6I	CTCTTC	1 cut(s)	739
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	67, 148, 213
BstDEI	CTNAG	2 cut(s)	471, 726
BstF5I	GGATG	2 cut(s)	59, 785
BstKTI	GATC	6 cut(s)	35, 116, 529, 576, 752, 761
BstMBI	GATC	6 cut(s)	32, 113, 526, 573, 749, 758
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	5 cut(s)	208, 350, 431, 671, 680
BstNI	CCWGG	2 cut(s)	180, 208
BstSCI	CCNGG	2 cut(s)	178, 206
BstSFI	CTRYAG	1 cut(s)	577
BstV1I	GCAGC	2 cut(s)	670, 677
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	2 cut(s)	32, 573
BstYI	RGATCY	2 cut(s)	32, 573
BsuRI	GGCC	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	59, 785
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	3 cut(s)	157, 504, 784
Cac8I	GCNNGC	3 cut(s)	67, 148, 213
CaiI	CAGNNNCTG	2 cut(s)	576, 704
Cfr13I	GGNCC	3 cut(s)	343, 373, 412
Csp6I	GTAC	2 cut(s)	244, 477
CviAII	CATG	1 cut(s)	632
CviQI	GTAC	2 cut(s)	244, 477
DdeI	CTNAG	2 cut(s)	471, 726
DpnI	GATC	6 cut(s)	34, 115, 528, 575, 751, 760
DpnII	GATC	6 cut(s)	32, 113, 526, 573, 749, 758
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	717
Eco47I	GGWCC	2 cut(s)	373, 412
EcoRII	CCWGG	2 cut(s)	178, 206
EcoT14I	CCWWGG	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	1 cut(s)	635
FaiI	YATR	9 cut(s)	40, 171, 332, 419, 432, 551, 620, 633, 689
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	1 cut(s)	631
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	666, 684
FokI	GGATG	2 cut(s)	46, 792
Fsp4HI	GCNGC	2 cut(s)	666, 684
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	666, 684
GsuI	CTGGAG	3 cut(s)	162, 285, 713
HaeIII	GGCC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	635
HincII	GTYRAC	2 cut(s)	396, 439
HindII	GTYRAC	2 cut(s)	396, 439
HinfI	GANTC	2 cut(s)	184, 695
HpaI	GTTAAC	1 cut(s)	396
HphI	GGTGA	3 cut(s)	349, 509, 649
Hpy166II	GTNNAC	4 cut(s)	373, 396, 439, 500
Hpy188I	TCNGA	3 cut(s)	118, 474, 487
Hpy188III	TCNNGA	3 cut(s)	127, 264, 403
Hpy8I	GTNNAC	4 cut(s)	373, 396, 439, 500
Hpy99I	CGWCG	3 cut(s)	97, 100, 192
HpyCH4III	ACNGT	5 cut(s)	122, 133, 382, 508, 788
HpyCH4V	TGCA	4 cut(s)	310, 434, 491, 776
HpyF10VI	GCNNNNNNNGC	5 cut(s)	208, 350, 431, 671, 680
HpyF3I	CTNAG	2 cut(s)	471, 726
Hsp92II	CATG	1 cut(s)	635
KspAI	GTTAAC	1 cut(s)	396
Kzo9I	GATC	6 cut(s)	32, 113, 526, 573, 749, 758
Lsp1109I	GCAGC	2 cut(s)	670, 677
LweI	GCATC	2 cut(s)	478, 770
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	6 cut(s)	34, 115, 528, 575, 751, 760
MboI	GATC	6 cut(s)	32, 113, 526, 573, 749, 758
MboII	GAAGA	5 cut(s)	93, 329, 652, 703, 756
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	2 cut(s)	32, 573
MluCI	AATT	4 cut(s)	139, 279, 297, 492
MlyI	GAGTC	2 cut(s)	178, 704
MnlI	CCTC	9 cut(s)	56, 67, 213, 517, 548, 592, 628, 646, 740
MseI	TTAA	6 cut(s)	6, 21, 225, 278, 395, 660
MspR9I	CCNGG	2 cut(s)	180, 208
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	180, 208
MwoI	GCNNNNNNNGC	5 cut(s)	208, 350, 431, 671, 680
NdeII	GATC	6 cut(s)	32, 113, 526, 573, 749, 758
NlaIII	CATG	1 cut(s)	635
NlaIV	GGNNCC	3 cut(s)	44, 201, 414
NspV	TTCGAA	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	667, 685
Ple19I	CGATCG	1 cut(s)	116
PleI	GAGTC	2 cut(s)	178, 703
PpsI	GAGTC	2 cut(s)	178, 703
Psp6I	CCWGG	2 cut(s)	178, 206
PspGI	CCWGG	2 cut(s)	178, 206
PspN4I	GGNNCC	3 cut(s)	44, 201, 414
PspPI	GGNCC	3 cut(s)	343, 373, 412
PstNI	CAGNNNCTG	2 cut(s)	576, 704
PsuI	RGATCY	2 cut(s)	32, 573
PvuI	CGATCG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	245, 478
RsaNI	GTAC	2 cut(s)	244, 477
SalI	GTCGAC	1 cut(s)	437
SaqAI	TTAA	6 cut(s)	6, 21, 225, 278, 395, 660
SatI	GCNGC	2 cut(s)	666, 684
Sau3AI	GATC	6 cut(s)	32, 113, 526, 573, 749, 758
Sau96I	GGNCC	3 cut(s)	343, 373, 412
SchI	GAGTC	2 cut(s)	178, 704
ScrFI	CCNGG	2 cut(s)	180, 208
SetI	ASST	9 cut(s)	48, 71, 355, 378, 427, 639, 649, 685, 736
SfaNI	GCATC	2 cut(s)	478, 770
SfcI	CTRYAG	1 cut(s)	577
SfuI	TTCGAA	1 cut(s)	136
SinI	GGWCC	2 cut(s)	373, 412
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	4 cut(s)	139, 279, 297, 492
SsiI	CCGC	2 cut(s)	63, 229
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	178, 206
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	5 cut(s)	122, 133, 382, 508, 788
TaqI	TCGA	7 cut(s)	112, 136, 156, 190, 438, 757, 768
TasI	AATT	4 cut(s)	139, 279, 297, 492
TatI	WGTACW	1 cut(s)	243
Tru1I	TTAA	6 cut(s)	6, 21, 225, 278, 395, 660
Tru9I	TTAA	6 cut(s)	6, 21, 225, 278, 395, 660
TscAI	CASTG	3 cut(s)	157, 511, 791
TseI	GCWGC	2 cut(s)	665, 683
TspGWI	ACGGA	3 cut(s)	81, 273, 783
TspRI	CASTG	3 cut(s)	157, 511, 791
Van91I	CCANNNNNTGG	1 cut(s)	72
VpaK11BI	GGWCC	2 cut(s)	373, 412
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 367
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.