Rroxscaffold_4G00319770

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008169
Physical Location & Seq
Forward (+)
47940075 .. 47943571
3497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319770.1

Sequence Viewer

Length: 891 bp
ATGTTTAAGCCTAAATCCCTTAACGGGTTGAGATCTCTATGGCACCTCAACCATTCCTCATCTGCCAGCTCTTGGTTTTCCCAGTTCTCTCCGTCGTCGTCTTCGTTTGCTCGATCGGACAGTTTCCAGACCGTTCGAAATTACGCCAGCAGTGTCGATGACAGAAATCATATCACTCCAGGGACTCGTCGAGTTCTGGTGCCTCCCAGGCAGGCTGTTGTCATTAAGCGGTGGTTTGGAATGTACTCCAAGACCCTATTATCTGGAGAATATTTCCTAATTCCATATTTTGATAAAATTGCTTCTGTGCATTGCTTGAAACCCAAGACCATAAATCTTCTGGCCCAGAAAGCTATCACCAAAAATAATGTGGGCCTTACTGTTACTAGCCAGTTAACTCTCAAGATTTTGGAGCCTATGTTAGCTACTTATGCGGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCAGAGTACCCAGTCTGATGCAATTGGTGAACTCACTGTTGAACAGATAATGGAGGATCAGCAAAGCCTCAATCAACACATATTGTCATTTCTCAACGACAGGATCTGTAGATGGGGCTTGTCTTGTGAGGCATTTGAGATAAATGACATAGCGGTTCCACATGAGGTGAAGAAAGCTATTGAGGACTTTAAGGCAGCCAAAGCAAAGAGAGCTGCCATACTGGAGTCAGTTGCTGACTTCTTCTCCAAGGCTACTAAGGAAGCTGGTGGGAGAAGCGGTTCTCCATCAAGGTTATGCTTCAGGCTTCAGGACTCCTGCATGGCCTTATTTAAGCCAAAATATTTTCTTAATTTGAAGCTATTTTCAGGTAGAGAGCTAGGTAATGTTTATTTGCTGGATCAGATGACCCAAGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

296

Amino Acids

33.15

Weight (kDa)

9.38

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 67 - 229 6.4e-21 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 42, 199
AccB7I CCANNNNNTGG 1 cut(s) 72
AccI GTMKAC 1 cut(s) 438
AciI CCGC 4 cut(s) 229, 434, 623, 747
AclWI GGATC 3 cut(s) 534, 581, 876
AcuI CTGAAG 2 cut(s) 754, 761
AfaI GTAC 2 cut(s) 245, 478
AfiI CCNNNNNNNGG 2 cut(s) 24, 72
AgsI TTSAA 3 cut(s) 319, 512, 826
AjnI CCWGG 2 cut(s) 178, 206
AloI GAACNNNNNNTCC 2 cut(s) 733, 765
AluBI AGCT 8 cut(s) 69, 353, 425, 647, 683, 734, 829, 847
AluI AGCT 8 cut(s) 69, 353, 425, 647, 683, 734, 829, 847
AlwI GGATC 3 cut(s) 534, 581, 876
AlwNI CAGNNNCTG 2 cut(s) 576, 704
AoxI GGCC 3 cut(s) 342, 373, 792
ApeKI GCWGC 2 cut(s) 665, 683
Asp700I GAANNNNTTC 1 cut(s) 748
AspS9I GGNCC 2 cut(s) 343, 373
AsuHPI GGTGA 3 cut(s) 349, 509, 649
AsuII TTCGAA 1 cut(s) 136
BanI GGYRCC 2 cut(s) 42, 199
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 670, 677
BccI CCATC 2 cut(s) 576, 763
BciT130I CCWGG 2 cut(s) 180, 208
BfaI CTAG 2 cut(s) 387, 848
BfmI CTRYAG 1 cut(s) 577
BglI GCCNNNNNGGC 1 cut(s) 208
BglII AGATCT 1 cut(s) 32
BisI GCNGC 2 cut(s) 666, 684
BlsI GCNGC 2 cut(s) 667, 685
Bme1390I CCNGG 2 cut(s) 180, 208
BmgT120I GGNCC 2 cut(s) 343, 373
BmiI GGNNCC 4 cut(s) 44, 201, 414, 627
BmrFI CCNGG 2 cut(s) 180, 208
BmrI ACTGGG 2 cut(s) 76, 475
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 2 cut(s) 76, 475
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 3 cut(s) 162, 285, 713
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 179, 206, 717
BsaXI ACNNNNNCTCC 6 cut(s) 404, 434, 698, 728, 733, 763
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 72
Bse1I ACTGG 4 cut(s) 82, 391, 481, 696
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 180, 208
BseDI CCNNGG 3 cut(s) 179, 206, 717
BseLI CCNNNNNNNGG 2 cut(s) 24, 72
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 4 cut(s) 82, 391, 481, 696
BseXI GCAGC 2 cut(s) 670, 677
Bsh1285I CGRYCG 2 cut(s) 116, 438
BshFI GGCC 3 cut(s) 344, 375, 794
BshNI GGYRCC 2 cut(s) 42, 199
BsiEI CGRYCG 2 cut(s) 116, 438
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 24, 72
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 3 cut(s) 344, 375, 794
Bsp119I TTCGAA 1 cut(s) 136
Bsp143I GATC 5 cut(s) 32, 113, 526, 573, 868
BspACI CCGC 4 cut(s) 229, 434, 623, 747
BspANI GGCC 3 cut(s) 344, 375, 794
BspCNI CTCAG 1 cut(s) 484
BspLI GGNNCC 4 cut(s) 44, 201, 414, 627
BspPI GGATC 3 cut(s) 534, 581, 876
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 2 cut(s) 42, 199
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 4 cut(s) 82, 391, 481, 696
BssECI CCNNGG 3 cut(s) 179, 206, 717
BssMI GATC 5 cut(s) 32, 113, 526, 573, 868
BssT1I CCWWGG 1 cut(s) 717
Bst2UI CCWGG 2 cut(s) 180, 208
Bst4CI ACNGT 4 cut(s) 122, 133, 382, 508
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 67, 148, 213
BstDEI CTNAG 2 cut(s) 471, 726
BstKTI GATC 5 cut(s) 35, 116, 529, 576, 871
BstMBI GATC 5 cut(s) 32, 113, 526, 573, 868
BstMCI CGRYCG 2 cut(s) 116, 438
BstMWI GCNNNNNNNGC 5 cut(s) 208, 350, 431, 671, 680
BstNI CCWGG 2 cut(s) 180, 208
BstSCI CCNGG 2 cut(s) 178, 206
BstSFI CTRYAG 1 cut(s) 577
BstV1I GCAGC 2 cut(s) 670, 677
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 32, 573
BstYI RGATCY 2 cut(s) 32, 573
BsuRI GGCC 3 cut(s) 344, 375, 794
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 157, 504
Cac8I GCNNGC 3 cut(s) 67, 148, 213
CaiI CAGNNNCTG 2 cut(s) 576, 704
Cfr13I GGNCC 2 cut(s) 343, 373
Csp6I GTAC 2 cut(s) 244, 477
CviAII CATG 2 cut(s) 632, 790
CviQI GTAC 2 cut(s) 244, 477
DdeI CTNAG 2 cut(s) 471, 726
DpnI GATC 5 cut(s) 34, 115, 528, 575, 870
DpnII GATC 5 cut(s) 32, 113, 526, 573, 868
Eco130I CCWWGG 1 cut(s) 717
Eco57I CTGAAG 2 cut(s) 754, 761
EcoRII CCWGG 2 cut(s) 178, 206
EcoT14I CCWWGG 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 717
FaeI CATG 2 cut(s) 635, 793
FaqI GGGAC 1 cut(s) 196
FatI CATG 2 cut(s) 631, 789
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 666, 684
Fsp4HI GCNGC 2 cut(s) 666, 684
FspBI CTAG 2 cut(s) 387, 848
GluI GCNGC 2 cut(s) 666, 684
GsuI CTGGAG 3 cut(s) 162, 285, 713
HaeIII GGCC 3 cut(s) 344, 375, 794
Hin1II CATG 2 cut(s) 635, 793
HincII GTYRAC 2 cut(s) 396, 439
HindII GTYRAC 2 cut(s) 396, 439
HinfI GANTC 3 cut(s) 184, 695, 782
HpaI GTTAAC 1 cut(s) 396
HphI GGTGA 3 cut(s) 349, 509, 649
Hpy166II GTNNAC 3 cut(s) 396, 439, 500
Hpy188I TCNGA 4 cut(s) 118, 474, 487, 873
Hpy188III TCNNGA 4 cut(s) 127, 264, 403, 779
Hpy8I GTNNAC 3 cut(s) 396, 439, 500
Hpy99I CGWCG 3 cut(s) 97, 100, 192
HpyCH4III ACNGT 4 cut(s) 122, 133, 382, 508
HpyCH4V TGCA 3 cut(s) 310, 491, 789
HpyF10VI GCNNNNNNNGC 5 cut(s) 208, 350, 431, 671, 680
HpyF3I CTNAG 2 cut(s) 471, 726
Hsp92II CATG 2 cut(s) 635, 793
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 5 cut(s) 32, 113, 526, 573, 868
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 2 cut(s) 670, 677
LweI GCATC 1 cut(s) 478
MaeI CTAG 2 cut(s) 387, 848
MaeIII GTNAC 1 cut(s) 382
MalI GATC 5 cut(s) 34, 115, 528, 575, 870
MboI GATC 5 cut(s) 32, 113, 526, 573, 868
MboII GAAGA 4 cut(s) 93, 329, 652, 703
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 2 cut(s) 32, 573
MluCI AATT 5 cut(s) 139, 279, 297, 492, 820
MlyI GAGTC 3 cut(s) 178, 704, 776
MnlI CCTC 8 cut(s) 56, 67, 213, 517, 548, 592, 628, 646
MroXI GAANNNNTTC 1 cut(s) 748
MseI TTAA 7 cut(s) 6, 21, 225, 395, 660, 801, 819
MspR9I CCNGG 2 cut(s) 180, 208
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 2 cut(s) 180, 208
MwoI GCNNNNNNNGC 5 cut(s) 208, 350, 431, 671, 680
NdeII GATC 5 cut(s) 32, 113, 526, 573, 868
NlaIII CATG 2 cut(s) 635, 793
NlaIV GGNNCC 4 cut(s) 44, 201, 414, 627
NspV TTCGAA 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 748
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 2 cut(s) 667, 685
Ple19I CGATCG 1 cut(s) 116
PleI GAGTC 3 cut(s) 178, 703, 776
PpsI GAGTC 3 cut(s) 178, 703, 776
Psp6I CCWGG 2 cut(s) 178, 206
PspGI CCWGG 2 cut(s) 178, 206
PspN4I GGNNCC 4 cut(s) 44, 201, 414, 627
PspPI GGNCC 2 cut(s) 343, 373
PstNI CAGNNNCTG 2 cut(s) 576, 704
PsuI RGATCY 2 cut(s) 32, 573
PvuI CGATCG 1 cut(s) 116
RsaI GTAC 2 cut(s) 245, 478
RsaNI GTAC 2 cut(s) 244, 477
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 7 cut(s) 6, 21, 225, 395, 660, 801, 819
SatI GCNGC 2 cut(s) 666, 684
Sau3AI GATC 5 cut(s) 32, 113, 526, 573, 868
Sau96I GGNCC 2 cut(s) 343, 373
SchI GAGTC 3 cut(s) 178, 704, 776
ScrFI CCNGG 2 cut(s) 180, 208
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 577
SfuI TTCGAA 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 5 cut(s) 139, 279, 297, 492, 820
SsiI CCGC 4 cut(s) 229, 434, 623, 747
SspI AATATT 2 cut(s) 272, 812
SspMI CTAG 2 cut(s) 387, 848
StyD4I CCNGG 2 cut(s) 178, 206
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 4 cut(s) 122, 133, 382, 508
TaqI TCGA 5 cut(s) 112, 136, 156, 190, 438
TasI AATT 5 cut(s) 139, 279, 297, 492, 820
TatI WGTACW 1 cut(s) 243
Tru1I TTAA 7 cut(s) 6, 21, 225, 395, 660, 801, 819
Tru9I TTAA 7 cut(s) 6, 21, 225, 395, 660, 801, 819
TscAI CASTG 2 cut(s) 157, 511
TseI GCWGC 2 cut(s) 665, 683
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 2 cut(s) 157, 511
Van91I CCANNNNNTGG 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 367
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 748
XspI CTAG 2 cut(s) 387, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.