RchiOBHm_Chr1g0353441

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016428
Physical Location & Seq
Reverse (-)
46679746 .. 46680547
802 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57908

Sequence Viewer

Length: 243 bp
ATGCTGATGGAGGTGGTGCTGTCGGCGGCGGCGATGCTGATGGAGGTGCTCCTAGCCATTTTGTTCCAATGGTGCATGGTTAGAATTGTTTTGAGGCCCCGGGTTGTCTTCAGCCCTAGTGATGGTGATGTTAGCCATGGCGGCACTGCAGGCTGTGGCATTGGCAAAGCAGACGGTGTTGGTCAAGCCGGTGGTGTCGGCACTATTGCTAACGGTGGCAGCGCTAAAGTCGTTTACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.15

Weight (kDa)

6.52

Isoelectric Point (pI)

19.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 26, 29, 141
AcuI CTGAAG 1 cut(s) 94
AfeI AGCGCT 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 99
Aor51HI AGCGCT 1 cut(s) 223
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 219
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 96
AsuC2I CCSGG 2 cut(s) 100, 101
AsuHPI GGTGA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 231
BccI CCATC 2 cut(s) 34, 116
BcnI CCSGG 2 cut(s) 100, 101
BfaI CTAG 3 cut(s) 53, 117, 241
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 141
BisI GCNGC 4 cut(s) 27, 30, 142, 220
BlsI GCNGC 4 cut(s) 28, 31, 143, 221
Bme1390I CCNGG 2 cut(s) 100, 101
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 100, 101
BmsI GCATC 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 100
BpuMI CCSGG 2 cut(s) 100, 101
BsaJI CCNNGG 3 cut(s) 98, 99, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 188
BseDI CCNNGG 3 cut(s) 98, 99, 136
BseLI CCNNNNNNNGG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 2 cut(s) 100, 189
BslI CCNNNNNNNGG 1 cut(s) 122
BsnI GGCC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 3 cut(s) 26, 29, 141
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 98
BspMAI CTGCAG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 3 cut(s) 98, 99, 136
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 176, 215
BstC8I GCNNGC 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 141, 150
BstSCI CCNGG 2 cut(s) 98, 99
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 96
Cfr9I CCCGGG 1 cut(s) 99
CviAII CATG 2 cut(s) 76, 137
CviJI RGCY 6 cut(s) 56, 97, 114, 135, 153, 188
CviKI_1 RGCY 6 cut(s) 56, 97, 114, 135, 153, 188
Eco130I CCWWGG 1 cut(s) 136
Eco47III AGCGCT 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 79, 140
FaiI YATR 2 cut(s) 77, 138
FatI CATG 2 cut(s) 75, 136
Fnu4HI GCNGC 4 cut(s) 27, 30, 142, 220
Fsp4HI GCNGC 4 cut(s) 27, 30, 142, 220
FspBI CTAG 3 cut(s) 53, 117, 241
GlaI GCGC 1 cut(s) 223
GluI GCNGC 4 cut(s) 27, 30, 142, 220
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 97
HapII CCGG 2 cut(s) 100, 189
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 79, 140
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HpaII CCGG 2 cut(s) 100, 189
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 176, 215
HpyCH4V TGCA 2 cut(s) 75, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 150
Hsp92II CATG 2 cut(s) 79, 140
HspAI GCGC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 3 cut(s) 113, 135, 202
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 24
MaeI CTAG 3 cut(s) 53, 117, 241
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 84
MnlI CCTC 3 cut(s) 4, 37, 87
MspI CCGG 2 cut(s) 100, 189
MspR9I CCNGG 2 cut(s) 100, 101
MwoI GCNNNNNNNGC 2 cut(s) 141, 150
NciI CCSGG 2 cut(s) 100, 101
NcoI CCATGG 1 cut(s) 136
NlaIII CATG 2 cut(s) 79, 140
NlaIV GGNNCC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PkrI GCNGC 4 cut(s) 28, 31, 143, 221
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 96
PstI CTGCAG 1 cut(s) 151
SatI GCNGC 4 cut(s) 27, 30, 142, 220
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 100, 101
SduI GDGCHC 1 cut(s) 51
SetI ASST 2 cut(s) 15, 48
SfaNI GCATC 1 cut(s) 24
SfcI CTRYAG 1 cut(s) 147
SmaI CCCGGG 1 cut(s) 101
Sse9I AATT 1 cut(s) 84
SsiI CCGC 3 cut(s) 26, 29, 141
SspMI CTAG 3 cut(s) 53, 117, 241
StyD4I CCNGG 2 cut(s) 98, 99
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 176, 215
TasI AATT 1 cut(s) 84
TauI GCSGC 3 cut(s) 29, 32, 144
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 219
TspMI CCCGGG 1 cut(s) 99
TspRI CASTG 1 cut(s) 151
XmaI CCCGGG 1 cut(s) 99
XspI CTAG 3 cut(s) 53, 117, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.