RLG00000032241

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016428
Physical Location & Seq
Forward (+)
12427149 .. 12440682
13534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032241

Sequence Viewer

Length: 663 bp
ATGTCTGACATCTCCAAAGCCATAATGGAGGTCGAGGTCAAGCTAAGGCTCCTATCCTTTTTGTTGCTGGGATTGCCCGAGTCGGTGTTTTGGCTTTGGATTGTGACAATCCTGTGGATGATTATGGGTTTGGTTCGTATTCCTCCCCGAATTCCCTTTCAACTGGCAACCAGTGACGAGCAAAAGATCAAGCTTTGTTGTGAGTTGGGAATTGCAGCTTGTTTCGTTGCATCAACGAAGTTTAGCTTTACTTTGATTGCTCTACTTCTCCAACTAGAAAAGCAAAGCGCCAACGAAATAATAGGAATGGAGTTTCTTTCAAAGATTGCTGAGTACACGATTGAACCTGTTGGACGTCTACTGGGACGCCAAGTGGGTTATAACCATATTTATGTGCAACAGCTGTTGAGATATGGTGTTGGTTTAGGTTTGTTTACAAATGTGAAAACACTAGAAGAAGCACGGAATGCATTGGATACACTGCTTGGAAAGCTCAAAGATTATTGCTTGTTGCTGGACAGTGATACTGAAGGATTTGTCAGAATGCATGATCTTGTATGTCATGTTGCTAACCGGATTGCATACAGGGATCATCAGATGTTATCTATAGAATCTGGAGGTTGTGTTCCCCAACTTAGCAACCTTGTGGGTGCACGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

221

Amino Acids

24.76

Weight (kDa)

6.43

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AatII GACGTC 1 cut(s) 358
AccI GTMKAC 1 cut(s) 358
AclWI GGATC 1 cut(s) 597
AcsI RAATTY 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 2 cut(s) 355, 367
AfaI GTAC 1 cut(s) 335
AgsI TTSAA 3 cut(s) 161, 321, 344
AleI CACNNNNGTG 1 cut(s) 658
AloI GAACNNNNNNTCC 2 cut(s) 609, 641
AluBI AGCT 6 cut(s) 43, 193, 218, 246, 403, 493
AluI AGCT 6 cut(s) 43, 193, 218, 246, 403, 493
Alw21I GWGCWC 1 cut(s) 655
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 1 cut(s) 597
Ama87I CYCGRG 1 cut(s) 77
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 150
AspLEI GCGC 1 cut(s) 290
AvaI CYCGRG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 1 cut(s) 227
BciVI GTATCC 1 cut(s) 469
BfaI CTAG 2 cut(s) 275, 452
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 291
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 636
Bpu10I CCTNAGC 1 cut(s) 44
BsaHI GRCGYC 2 cut(s) 355, 367
BsaWI WCCGGW 1 cut(s) 573
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bse1I ACTGG 3 cut(s) 168, 171, 366
BseGI GGATG 2 cut(s) 123, 663
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 3 cut(s) 168, 171, 366
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 1 cut(s) 227
BseYI CCCAGC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 655
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 574
BslFI GGGAC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 378
BsmI GAATGC 2 cut(s) 472, 549
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 655
Bsp143I GATC 3 cut(s) 186, 550, 589
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 597
BsrI ACTGG 3 cut(s) 168, 171, 366
BssMI GATC 3 cut(s) 186, 550, 589
BssNI GRCGYC 2 cut(s) 355, 367
Bst4CI ACNGT 1 cut(s) 521
BstACI GRCGYC 2 cut(s) 355, 367
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 3 cut(s) 44, 330, 635
BstF5I GGATG 2 cut(s) 123, 663
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 3 cut(s) 189, 553, 592
BstMBI GATC 3 cut(s) 186, 550, 589
BstMWI GCNNNNNNNGC 3 cut(s) 73, 467, 490
BstSFI CTRYAG 1 cut(s) 606
BstSLI GKGCMC 1 cut(s) 655
BstV1I GCAGC 1 cut(s) 227
BsuI GTATCC 1 cut(s) 469
BtsCI GGATG 2 cut(s) 123, 663
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 3 cut(s) 178, 479, 526
CfoI GCGC 1 cut(s) 290
CseI GACGC 1 cut(s) 375
Csp6I GTAC 1 cut(s) 334
CviAII CATG 2 cut(s) 548, 563
CviJI RGCY 9 cut(s) 20, 43, 49, 94, 193, 218, 246, 403, 493
CviKI_1 RGCY 9 cut(s) 20, 43, 49, 94, 193, 218, 246, 403, 493
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 3 cut(s) 44, 330, 635
DpnI GATC 3 cut(s) 188, 552, 591
DpnII GATC 3 cut(s) 186, 550, 589
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 150
EcoT22I ATGCAT 2 cut(s) 472, 549
FaeI CATG 2 cut(s) 551, 566
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 547, 562
FblI GTMKAC 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 275, 452
GlaI GCGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 636
HaeII RGCGCY 1 cut(s) 291
HapII CCGG 1 cut(s) 574
HgaI GACGC 1 cut(s) 375
HhaI GCGC 1 cut(s) 290
Hin1I GRCGYC 2 cut(s) 355, 367
Hin1II CATG 2 cut(s) 551, 566
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 2 cut(s) 80, 611
HpaII CCGG 1 cut(s) 574
Hpy166II GTNNAC 4 cut(s) 336, 359, 435, 653
Hpy188I TCNGA 3 cut(s) 7, 542, 597
Hpy188III TCNNGA 1 cut(s) 615
Hpy8I GTNNAC 4 cut(s) 336, 359, 435, 653
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 7 cut(s) 215, 230, 397, 470, 547, 581, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 467, 490
HpyF3I CTNAG 3 cut(s) 44, 330, 635
HpySE526I ACGT 1 cut(s) 355
Hsp92I GRCGYC 2 cut(s) 355, 367
Hsp92II CATG 2 cut(s) 551, 566
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 3 cut(s) 186, 550, 589
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 239
MaeI CTAG 2 cut(s) 275, 452
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 103, 173
MalI GATC 3 cut(s) 188, 552, 591
MboI GATC 3 cut(s) 186, 550, 589
MboII GAAGA 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 2 cut(s) 150, 210
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 295, 331
MnlI CCTC 4 cut(s) 22, 28, 153, 611
Mph1103I ATGCAT 2 cut(s) 472, 549
MslI CAYNNNNRTG 2 cut(s) 390, 658
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 1 cut(s) 574
Mva1269I GAATGC 2 cut(s) 472, 549
MwoI GCNNNNNNNGC 3 cut(s) 73, 467, 490
NdeII GATC 3 cut(s) 186, 550, 589
NlaIII CATG 2 cut(s) 551, 566
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 103, 173
NsiI ATGCAT 2 cut(s) 472, 549
OliI CACNNNNGTG 1 cut(s) 658
PctI GAATGC 2 cut(s) 472, 549
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PsiI TTATAA 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 390, 658
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 186, 550, 589
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 655
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 606
SmiMI CAYNNNNRTG 2 cut(s) 390, 658
Sse9I AATT 2 cut(s) 150, 210
SspMI CTAG 2 cut(s) 275, 452
TaaI ACNGT 1 cut(s) 521
TaiI ACGT 1 cut(s) 358
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 150, 210
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 1 cut(s) 611
TscAI CASTG 3 cut(s) 178, 486, 526
TseFI GTSAC 2 cut(s) 103, 173
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 2 cut(s) 103, 173
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 3 cut(s) 178, 486, 526
VneI GTGCAC 1 cut(s) 651
XapI RAATTY 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 358
XspI CTAG 2 cut(s) 275, 452
ZraI GACGTC 1 cut(s) 356
Zsp2I ATGCAT 2 cut(s) 472, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.