RLG00000002898

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016428
Physical Location & Seq
Reverse (-)
41440851 .. 41442574
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002898

Sequence Viewer

Length: 387 bp
ATGGACGCCATCGACGATGAGATAGAGGTCTCGCAGCGGGTGGTGGATTTGATGCCAGCCTTCCCTTGGCTGGTTGGGCGTTTTTTTTCCACGGAGAAGTTGGCAGCTGCTCTGGGTCAGATTGTGCACCTCTGCTTTTGCTCTTGGTTTCTTGATCCAGGAGGAGGCGGTGATGTTGGTGGAGGTGGTGTTGTTGGCGGCAGTGGTGATGATGGTGGTGCTCCTAGCCATTTTGTTCCAATGGTGGTTAGGGTTGTTTTGGGCCCCTGGGTTGTCTTCAGCCCTAGTGGTGGTGATGTTGGCTATGCGGCATTGCGGGCTAGGGCAGTGGCAACGCAGACGGTTTTGTTTCGCATGTATGAGGATGTGCTTAAGAGTATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.47

Weight (kDa)

4.57

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 37, 168, 198, 308, 316
AclWI GGATC 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 6
AfiI CCNNNNNNNGG 4 cut(s) 66, 70, 164, 290
AflII CTTAAG 1 cut(s) 371
AjnI CCWGG 2 cut(s) 157, 266
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw21I GWGCWC 2 cut(s) 129, 223
Alw26I GTCTC 1 cut(s) 34
Alw44I GTGCAC 1 cut(s) 125
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 262
ApaI GGGCCC 1 cut(s) 266
ApaLI GTGCAC 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 34, 104, 107
AspS9I GGNCC 2 cut(s) 262, 263
AsuHPI GGTGA 3 cut(s) 182, 218, 305
BaeGI GKGCMC 2 cut(s) 129, 266
BanII GRGCYC 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 129, 223
BbvI GCAGC 3 cut(s) 46, 94, 116
BccI CCATC 2 cut(s) 17, 206
BciT130I CCWGG 2 cut(s) 159, 268
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 3 cut(s) 225, 285, 321
BfrI CTTAAG 1 cut(s) 371
BisI GCNGC 5 cut(s) 35, 105, 108, 199, 309
BlsI GCNGC 5 cut(s) 36, 106, 109, 200, 310
Bme1390I CCNGG 2 cut(s) 159, 268
BmgT120I GGNCC 2 cut(s) 262, 263
BmiI GGNNCC 2 cut(s) 264, 265
BmrFI CCNGG 2 cut(s) 159, 268
BmsI GCATC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 65, 90, 266, 267
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 70, 164, 290
Bse3DI GCAATG 1 cut(s) 311
BseBI CCWGG 2 cut(s) 159, 268
BseDI CCNNGG 4 cut(s) 65, 90, 266, 267
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 4 cut(s) 66, 70, 164, 290
BseMI GCAATG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 2 cut(s) 129, 266
BseXI GCAGC 3 cut(s) 46, 94, 116
BshFI GGCC 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 129, 223
BslI CCNNNNNNNGG 4 cut(s) 66, 70, 164, 290
BsmAI GTCTC 1 cut(s) 34
BsnI GGCC 1 cut(s) 264
Bso31I GGTCTC 1 cut(s) 34
Bsp120I GGGCCC 1 cut(s) 262
Bsp1286I GDGCHC 3 cut(s) 129, 223, 266
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 5 cut(s) 37, 168, 198, 308, 316
BspANI GGCC 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 264, 265
BspPI GGATC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 311
BssECI CCNNGG 4 cut(s) 65, 90, 266, 267
BssMI GATC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 159, 268
Bst4CI ACNGT 1 cut(s) 343
BstACI GRCGYC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 371
BstC8I GCNNGC 2 cut(s) 57, 318
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 76, 317
BstNI CCWGG 2 cut(s) 159, 268
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 2 cut(s) 157, 266
BstSLI GKGCMC 2 cut(s) 129, 266
BstV1I GCAGC 3 cut(s) 46, 94, 116
BstV2I GAAGAC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 2 cut(s) 208, 333
BtsIMutI CAGTG 2 cut(s) 208, 333
Cac8I GCNNGC 2 cut(s) 57, 318
Cfr13I GGNCC 2 cut(s) 262, 263
CseI GACGC 1 cut(s) 14
CviAII CATG 1 cut(s) 355
CviJI RGCY 8 cut(s) 59, 70, 107, 228, 264, 282, 303, 320
CviKI_1 RGCY 8 cut(s) 59, 70, 107, 228, 264, 282, 303, 320
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 157, 266
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 1 cut(s) 358
FaiI YATR 4 cut(s) 306, 356, 360, 380
FatI CATG 1 cut(s) 354
FauI CCCGC 2 cut(s) 30, 309
Fnu4HI GCNGC 5 cut(s) 35, 105, 108, 199, 309
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 5 cut(s) 35, 105, 108, 199, 309
FspBI CTAG 3 cut(s) 225, 285, 321
GluI GCNGC 5 cut(s) 35, 105, 108, 199, 309
HaeIII GGCC 1 cut(s) 264
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 358
HphI GGTGA 3 cut(s) 182, 218, 305
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 317
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 358
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 7 cut(s) 56, 69, 98, 144, 171, 253, 280
Lsp1109I GCAGC 3 cut(s) 46, 94, 116
LweI GCATC 1 cut(s) 42
MaeI CTAG 3 cut(s) 225, 285, 321
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 268
MhlI GDGCHC 3 cut(s) 129, 223, 266
MnlI CCTC 6 cut(s) 19, 140, 155, 158, 176, 355
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 2 cut(s) 37, 107
MspCI CTTAAG 1 cut(s) 371
MspR9I CCNGG 2 cut(s) 159, 268
MvaI CCWGG 2 cut(s) 159, 268
MwoI GCNNNNNNNGC 2 cut(s) 76, 317
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 2 cut(s) 264, 265
NspI RCATGY 1 cut(s) 358
PasI CCCWGGG 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 5 cut(s) 36, 106, 109, 200, 310
Psp6I CCWGG 2 cut(s) 157, 266
PspGI CCWGG 2 cut(s) 157, 266
PspN4I GGNNCC 2 cut(s) 264, 265
PspOMI GGGCCC 1 cut(s) 262
PspPI GGNCC 2 cut(s) 262, 263
PvuII CAGCTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 5 cut(s) 35, 105, 108, 199, 309
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 2 cut(s) 262, 263
ScrFI CCNGG 2 cut(s) 159, 268
SduI GDGCHC 3 cut(s) 129, 223, 266
SetI ASST 4 cut(s) 30, 109, 132, 187
SfaNI GCATC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SsiI CCGC 5 cut(s) 37, 168, 198, 308, 316
SspMI CTAG 3 cut(s) 225, 285, 321
StyD4I CCNGG 2 cut(s) 157, 266
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 1 cut(s) 12
TauI GCSGC 2 cut(s) 201, 311
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 208, 333
TseI GCWGC 3 cut(s) 34, 104, 107
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 2 cut(s) 208, 333
Vha464I CTTAAG 1 cut(s) 371
VneI GTGCAC 1 cut(s) 125
XceI RCATGY 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 2 cut(s) 63, 97
XspI CTAG 3 cut(s) 225, 285, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.