RLG00000026860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016428
Physical Location & Seq
Reverse (-)
6559462 .. 6560519
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026860

Sequence Viewer

Length: 366 bp
ATGGTTAACCATGATGAGATTATGAACGCCATGGGGACCAGGGTACGCGGAGGCGGTGATGTTGTTGGCGGCGGCGATGATGATGGGGGTGCTCCTAGCCATTTTGTTCAAATGATGGTTAGGGTTGTTTGGGGCCTCCGGGTTGTCTTCAACCCTAGTAGGGGTGATGTTGGCCATGGCGGCATCTTAGGCTGTGGCAATAGCAGCGAAGACGGTGTTGGTAAAGTCGGTGGTGTCGGCATTGGTGCTAACGGCAACGACGCTGAAGTCACTCTGCTTCTAGGTTGGCTAGGGTTTGCTTCATGCCCTAGGATTATCTTTGGGCTTGAATGTGGGCTTAGTAGCCCAATCTTGTTTTATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.41

Weight (kDa)

4.86

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccII CGCG 1 cut(s) 48
AciI CCGC 5 cut(s) 48, 54, 69, 72, 180
AcoI YGGCCR 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 160, 161
AgsI TTSAA 3 cut(s) 110, 151, 329
AjnI CCWGG 1 cut(s) 38
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
Alw21I GWGCWC 1 cut(s) 94
AoxI GGCC 2 cut(s) 133, 172
ApeKI GCWGC 1 cut(s) 204
AspA2I CCTAGG 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 36, 133
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 68, 176
AvaII GGWCC 1 cut(s) 36
AvrII CCTAGG 1 cut(s) 308
BalI TGGCCA 1 cut(s) 174
BbsI GAAGAC 2 cut(s) 139, 216
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 77, 109
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 40
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 6 cut(s) 96, 156, 281, 290, 309, 364
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 4 cut(s) 70, 73, 181, 205
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 4 cut(s) 71, 74, 182, 206
Bme1390I CCNGG 2 cut(s) 40, 140
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 36, 133
BmiI GGNNCC 2 cut(s) 37, 134
BmrFI CCNGG 2 cut(s) 40, 140
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 2 cut(s) 139, 216
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 4 cut(s) 30, 39, 175, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 161
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 4 cut(s) 30, 39, 175, 308
BseLI CCNNNNNNNGG 2 cut(s) 160, 161
BseXI GCAGC 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 135, 174
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 160, 161
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 2 cut(s) 135, 174
Bsp1286I GDGCHC 1 cut(s) 94
Bsp19I CCATGG 2 cut(s) 30, 175
BspACI CCGC 5 cut(s) 48, 54, 69, 72, 180
BspANI GGCC 2 cut(s) 135, 174
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 37, 134
BssECI CCNNGG 4 cut(s) 30, 39, 175, 308
BssT1I CCWWGG 3 cut(s) 30, 175, 308
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 187, 338
BstDSI CCRYGG 2 cut(s) 30, 175
BstFNI CGCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 180, 189, 204
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 38, 138
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 2 cut(s) 139, 216
BsuRI GGCC 2 cut(s) 135, 174
BtgI CCRYGG 2 cut(s) 30, 175
BtgZI GCGATG 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 36, 133
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 44
CviAII CATG 4 cut(s) 11, 31, 176, 303
CviJI RGCY 8 cut(s) 99, 135, 174, 192, 289, 325, 337, 345
CviKI_1 RGCY 8 cut(s) 99, 135, 174, 192, 289, 325, 337, 345
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 187, 338
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 172
Eco130I CCWWGG 3 cut(s) 30, 175, 308
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 3 cut(s) 30, 175, 308
ErhI CCWWGG 3 cut(s) 30, 175, 308
FaeI CATG 4 cut(s) 14, 34, 179, 306
FaiI YATR 5 cut(s) 12, 23, 32, 177, 304
FaqI GGGAC 1 cut(s) 49
FatI CATG 4 cut(s) 10, 30, 175, 302
Fnu4HI GCNGC 4 cut(s) 70, 73, 181, 205
Fsp4HI GCNGC 4 cut(s) 70, 73, 181, 205
FspBI CTAG 6 cut(s) 96, 156, 281, 290, 309, 364
GluI GCNGC 4 cut(s) 70, 73, 181, 205
HaeIII GGCC 2 cut(s) 135, 174
HapII CCGG 1 cut(s) 139
HgaI GACGC 1 cut(s) 269
Hin1II CATG 4 cut(s) 14, 34, 179, 306
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HpaI GTTAAC 1 cut(s) 7
HpaII CCGG 1 cut(s) 139
HphI GGTGA 2 cut(s) 68, 176
Hpy166II GTNNAC 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 189, 204
HpyF3I CTNAG 2 cut(s) 187, 338
Hsp92II CATG 4 cut(s) 14, 34, 179, 306
KspAI GTTAAC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 3 cut(s) 25, 52, 152
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 192
MaeI CTAG 6 cut(s) 96, 156, 281, 290, 309, 364
MaeIII GTNAC 1 cut(s) 268
MboII GAAGA 2 cut(s) 139, 221
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 174
MluNI TGGCCA 1 cut(s) 174
MnlI CCTC 2 cut(s) 44, 146
Mox20I TGGCCA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 174
MseI TTAA 1 cut(s) 6
Msp20I TGGCCA 1 cut(s) 174
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 40, 140
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 180, 189, 204
NciI CCSGG 1 cut(s) 140
NcoI CCATGG 2 cut(s) 30, 175
NlaIII CATG 4 cut(s) 14, 34, 179, 306
NlaIV GGNNCC 2 cut(s) 37, 134
NmuCI GTSAC 1 cut(s) 268
PkrI GCNGC 4 cut(s) 71, 74, 182, 206
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 37, 134
PspPI GGNCC 2 cut(s) 36, 133
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 4 cut(s) 70, 73, 181, 205
Sau96I GGNCC 2 cut(s) 36, 133
ScrFI CCNGG 2 cut(s) 40, 140
SduI GDGCHC 1 cut(s) 94
SetI ASST 1 cut(s) 286
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 1 cut(s) 36
SsiI CCGC 5 cut(s) 48, 54, 69, 72, 180
SspMI CTAG 6 cut(s) 96, 156, 281, 290, 309, 364
StyD4I CCNGG 2 cut(s) 38, 138
StyI CCWWGG 3 cut(s) 30, 175, 308
TaaI ACNGT 1 cut(s) 215
TauI GCSGC 3 cut(s) 72, 75, 183
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 38, 291
VpaK11BI GGWCC 1 cut(s) 36
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 6 cut(s) 96, 156, 281, 290, 309, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.