RLG00000033705

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016428
Physical Location & Seq
Reverse (-)
31147440 .. 31149085
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033705

Sequence Viewer

Length: 807 bp
ATGACGGGCGAAGCATCAATGGTGGTGCCAGCGAGTTGGACTGAACCTGGTGGAGTGTCGATGATGCCAACAATGCAGCAGTGGTGGGGTGGTGATGATGGTTGGGATACTGAGACATGTGTTGTTATGCCTAGCTCGAGTCTTATTCCACTATCCCCTACAATTGAAGAGATGGGGTTGTTTCAATCGAGTCCGAGGCGTTCTCTCTCCTCGTGTTTTTCTATGGTGGCCGTAAGGCTATTTTTTCAAACCCAAATTCATCCTTCCCTGATCTCAGATCATCCTTCCCCAATCTCAGATCATCCTTCCCTGATCTCCTTCCAATCCTTTTCCATCTTTCCACTCATTTTGATCTCATCTCCCTTGCCCTCTTCAACCCATTCCATCTCGAGCATCCACATGGACGCCATCGACGATGAGATAGAGGTCTCACATCGGGAGGTGGATTTGATGCCAGCCTTCCCTTGGCTGGTTGGGCTTTTTGTTTCCACGGAGAAGTTGGCGGCTGCTCTGGGTCAGATTGTGCACCTCTGCTTTTGCTCTTGGTTTTTTGATCCAGGAGAGGCGGTGATGCTGGTGGAGGTGGTGTTGTTGGCGGCGGTGGTGCTCCTAGCCATTTTGTTCCAATGGTGGTTAGGGTTGTTTTGGGCCCTTGGGTTGTCTTCAGCCCTAGTGGTGGTGATGTTGGCTATGGCGGCATTGTGGGCTGGGGCAGTGGCAACGCAGACGGTTTTGGTAAAGCCGGTGGTGTCGGCTCTATTGCTAACGGAGGCGGCGCTAAAGTCAGTTTGCTTCTCGGGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

28.94

Weight (kDa)

4.51

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 6 cut(s) 503, 566, 596, 599, 695, 773
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 648
AcyI GRCGYC 1 cut(s) 405
AfiI CCNNNNNNNGG 3 cut(s) 465, 469, 676
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 4 cut(s) 167, 185, 248, 375
AjnI CCWGG 2 cut(s) 46, 556
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw21I GWGCWC 2 cut(s) 528, 609
Alw26I GTCTC 2 cut(s) 107, 433
Alw44I GTGCAC 1 cut(s) 524
AlwI GGATC 1 cut(s) 548
Ama87I CYCGRG 3 cut(s) 136, 388, 796
AoxI GGCC 2 cut(s) 228, 648
ApaI GGGCCC 1 cut(s) 652
ApaLI GTGCAC 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 76, 506
ApoI RAATTY 1 cut(s) 255
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 2 cut(s) 648, 649
AsuHPI GGTGA 3 cut(s) 104, 580, 691
AvaI CYCGRG 3 cut(s) 136, 388, 796
BaeGI GKGCMC 2 cut(s) 528, 652
BanI GGYRCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 652
BauI CACGAG 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 2 cut(s) 528, 609
BbvI GCAGC 2 cut(s) 88, 493
BccI CCATC 5 cut(s) 92, 166, 341, 392, 416
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 2 cut(s) 48, 558
BciVI GTATCC 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 107, 433
BfaI CTAG 4 cut(s) 132, 611, 671, 805
BfoI RGCGCY 1 cut(s) 779
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 6 cut(s) 77, 504, 507, 597, 696, 774
BlsI GCNGC 6 cut(s) 78, 505, 508, 598, 697, 775
Bme1390I CCNGG 2 cut(s) 48, 558
BmeT110I CYCGRG 3 cut(s) 136, 388, 796
BmgT120I GGNCC 2 cut(s) 648, 649
BmiI GGNNCC 2 cut(s) 27, 650
BmrFI CCNGG 2 cut(s) 48, 558
BmsI GCATC 5 cut(s) 23, 54, 402, 441, 561
BpiI GAAGAC 1 cut(s) 654
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BsaHI GRCGYC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 433
BsaJI CCNNGG 4 cut(s) 194, 464, 489, 652
BsaXI ACNNNNNCTCC 4 cut(s) 552, 572, 582, 602
Bsc4I CCNNNNNNNGG 3 cut(s) 465, 469, 676
Bse118I RCCGGY 1 cut(s) 742
BseBI CCWGG 2 cut(s) 48, 558
BseDI CCNNGG 4 cut(s) 194, 464, 489, 652
BseGI GGATG 4 cut(s) 259, 280, 301, 393
BseLI CCNNNNNNNGG 3 cut(s) 465, 469, 676
BseMII CTCAG 3 cut(s) 102, 288, 309
BseRI GAGGAG 1 cut(s) 199
BseSI GKGCMC 2 cut(s) 528, 652
BseXI GCAGC 2 cut(s) 88, 493
BseYI CCCAGC 1 cut(s) 707
BshFI GGCC 2 cut(s) 230, 650
BshNI GGYRCC 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 528, 609
BsiHKCI CYCGRG 3 cut(s) 136, 388, 796
BsiSI CCGG 1 cut(s) 743
BslI CCNNNNNNNGG 3 cut(s) 465, 469, 676
BsmAI GTCTC 2 cut(s) 107, 433
BsnI GGCC 2 cut(s) 230, 650
Bso31I GGTCTC 1 cut(s) 433
BsoBI CYCGRG 3 cut(s) 136, 388, 796
Bsp120I GGGCCC 1 cut(s) 648
Bsp1286I GDGCHC 3 cut(s) 528, 609, 652
Bsp143I GATC 6 cut(s) 270, 277, 298, 312, 351, 553
BspACI CCGC 6 cut(s) 503, 566, 596, 599, 695, 773
BspANI GGCC 2 cut(s) 230, 650
BspCNI CTCAG 3 cut(s) 103, 287, 308
BspLI GGNNCC 2 cut(s) 27, 650
BspPI GGATC 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 433
BsrFI RCCGGY 1 cut(s) 742
BssAI RCCGGY 1 cut(s) 742
BssECI CCNNGG 4 cut(s) 194, 464, 489, 652
BssMI GATC 6 cut(s) 270, 277, 298, 312, 351, 553
BssNI GRCGYC 1 cut(s) 405
BssSI CACGAG 1 cut(s) 211
BssT1I CCWWGG 2 cut(s) 464, 652
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 48, 558
Bst4CI ACNGT 1 cut(s) 730
Bst6I CTCTTC 2 cut(s) 162, 376
BstACI GRCGYC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 30, 456
BstDEI CTNAG 3 cut(s) 111, 274, 295
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 4 cut(s) 259, 280, 301, 393
BstH2I RGCGCY 1 cut(s) 779
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 6 cut(s) 273, 280, 301, 315, 354, 556
BstMAI GTCTC 2 cut(s) 107, 433
BstMBI GATC 6 cut(s) 270, 277, 298, 312, 351, 553
BstMWI GCNNNNNNNGC 4 cut(s) 73, 475, 695, 704
BstNI CCWGG 2 cut(s) 48, 558
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 46, 556
BstSLI GKGCMC 2 cut(s) 528, 652
BstV1I GCAGC 2 cut(s) 88, 493
BstV2I GAAGAC 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 36
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 230, 650
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 4 cut(s) 259, 280, 301, 393
BtsI GCAGTG 2 cut(s) 86, 720
BtsIMutI CAGTG 2 cut(s) 86, 720
Cac8I GCNNGC 2 cut(s) 30, 456
CfoI GCGC 1 cut(s) 778
Cfr10I RCCGGY 1 cut(s) 742
Cfr13I GGNCC 2 cut(s) 648, 649
CseI GACGC 1 cut(s) 413
CsiI ACCWGGT 1 cut(s) 46
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 2 cut(s) 117, 400
DdeI CTNAG 3 cut(s) 111, 274, 295
DpnI GATC 6 cut(s) 272, 279, 300, 314, 353, 555
DpnII GATC 6 cut(s) 270, 277, 298, 312, 351, 553
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 2 cut(s) 162, 376
EarI CTCTTC 2 cut(s) 162, 376
Eco130I CCWWGG 2 cut(s) 464, 652
Eco24I GRGCYC 1 cut(s) 652
Eco31I GGTCTC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 648
Eco88I CYCGRG 3 cut(s) 136, 388, 796
EcoO109I RGGNCCY 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 46, 556
EcoT14I CCWWGG 2 cut(s) 464, 652
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 2 cut(s) 464, 652
FaeI CATG 2 cut(s) 120, 403
FaiI YATR 5 cut(s) 118, 128, 224, 401, 692
FatI CATG 2 cut(s) 116, 399
Fnu4HI GCNGC 6 cut(s) 77, 504, 507, 597, 696, 774
FokI GGATG 4 cut(s) 246, 267, 288, 380
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 6 cut(s) 77, 504, 507, 597, 696, 774
FspBI CTAG 4 cut(s) 132, 611, 671, 805
GlaI GCGC 1 cut(s) 777
GluI GCNGC 6 cut(s) 77, 504, 507, 597, 696, 774
GsaI CCCAGC 1 cut(s) 711
HaeII RGCGCY 1 cut(s) 779
HaeIII GGCC 2 cut(s) 230, 650
HapII CCGG 1 cut(s) 743
HgaI GACGC 1 cut(s) 413
HhaI GCGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 2 cut(s) 120, 403
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HinfI GANTC 2 cut(s) 139, 190
HpaII CCGG 1 cut(s) 743
HphI GGTGA 3 cut(s) 104, 580, 691
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 4 cut(s) 195, 277, 298, 519
Hpy188III TCNNGA 2 cut(s) 388, 437
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 5 cut(s) 273, 294, 315, 328, 469
HpyCH4III ACNGT 1 cut(s) 730
HpyCH4V TGCA 2 cut(s) 76, 526
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 475, 695, 704
HpyF3I CTNAG 3 cut(s) 111, 274, 295
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 2 cut(s) 120, 403
HspAI GCGC 1 cut(s) 776
Kzo9I GATC 6 cut(s) 270, 277, 298, 312, 351, 553
LmnI GCTCC 1 cut(s) 612
Lsp1109I GCAGC 2 cut(s) 88, 493
LweI GCATC 5 cut(s) 23, 54, 402, 441, 561
MabI ACCWGGT 1 cut(s) 46
MaeI CTAG 4 cut(s) 132, 611, 671, 805
MalI GATC 6 cut(s) 272, 279, 300, 314, 353, 555
MboI GATC 6 cut(s) 270, 277, 298, 312, 351, 553
MboII GAAGA 3 cut(s) 179, 363, 654
MfeI CAATTG 1 cut(s) 162
MhlI GDGCHC 3 cut(s) 528, 609, 652
MluCI AATT 2 cut(s) 162, 255
MlyI GAGTC 2 cut(s) 148, 199
MmeI TCCRAC 1 cut(s) 17
MnlI CCTC 9 cut(s) 189, 220, 379, 418, 433, 539, 556, 574, 763
MslI CAYNNNNRTG 1 cut(s) 398
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 2 cut(s) 48, 558
MunI CAATTG 1 cut(s) 162
MvaI CCWGG 2 cut(s) 48, 558
MwoI GCNNNNNNNGC 4 cut(s) 73, 475, 695, 704
NdeII GATC 6 cut(s) 270, 277, 298, 312, 351, 553
NlaIII CATG 2 cut(s) 120, 403
NlaIV GGNNCC 2 cut(s) 27, 650
NspI RCATGY 1 cut(s) 120
PaeR7I CTCGAG 2 cut(s) 136, 388
PciI ACATGT 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 6 cut(s) 78, 505, 508, 598, 697, 775
PleI GAGTC 2 cut(s) 147, 198
PpsI GAGTC 2 cut(s) 147, 198
PscI ACATGT 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 46, 556
PspFI CCCAGC 1 cut(s) 707
PspGI CCWGG 2 cut(s) 46, 556
PspN4I GGNNCC 2 cut(s) 27, 650
PspOMI GGGCCC 1 cut(s) 648
PspPI GGNCC 2 cut(s) 648, 649
PspXI VCTCGAGB 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 398
SatI GCNGC 6 cut(s) 77, 504, 507, 597, 696, 774
Sau3AI GATC 6 cut(s) 270, 277, 298, 312, 351, 553
Sau96I GGNCC 2 cut(s) 648, 649
SchI GAGTC 2 cut(s) 148, 199
ScrFI CCNGG 2 cut(s) 48, 558
SduI GDGCHC 3 cut(s) 528, 609, 652
SetI ASST 6 cut(s) 49, 137, 429, 444, 531, 585
SexAI ACCWGGT 1 cut(s) 46
SfaNI GCATC 5 cut(s) 23, 54, 402, 441, 561
Sfr274I CTCGAG 2 cut(s) 136, 388
SlaI CTCGAG 2 cut(s) 136, 388
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 136, 388
SmoI CTYRAG 2 cut(s) 136, 388
Sse9I AATT 2 cut(s) 162, 255
SsiI CCGC 6 cut(s) 503, 566, 596, 599, 695, 773
SspMI CTAG 4 cut(s) 132, 611, 671, 805
StyD4I CCNGG 2 cut(s) 46, 556
StyI CCWWGG 2 cut(s) 464, 652
TaaI ACNGT 1 cut(s) 730
TaqI TCGA 5 cut(s) 59, 137, 188, 389, 411
TasI AATT 2 cut(s) 162, 255
TauI GCSGC 4 cut(s) 506, 599, 698, 776
TscAI CASTG 2 cut(s) 86, 720
TseI GCWGC 2 cut(s) 76, 506
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 2 cut(s) 506, 782
TspRI CASTG 2 cut(s) 86, 720
VneI GTGCAC 1 cut(s) 524
XapI RAATTY 1 cut(s) 255
XceI RCATGY 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 2 cut(s) 462, 496
XhoI CTCGAG 2 cut(s) 136, 388
XspI CTAG 4 cut(s) 132, 611, 671, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.