Rh3BG274900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016428
Physical Location & Seq
Forward (+)
26861665 .. 26862178
514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG274900.1

Sequence Viewer

Length: 468 bp
ATGAGCGCCATCGGCGATGAGATCGTGGCCTCGCAGCGGGTAGTGGATCTGATGCCAGCCTTCCTTTGGCTGGTTGAGCGTTTTGCTTCCGAGGAGATGATGGTGGCTGTCCAACTATTCTCTCCTCCTTTGGGTGGAGGCGATGATGCTGGTGGAGGCGGTGCTATCAGCGGCGGTGATGCTGACGGAGGTGCTTCTAGCCAATCTGGTACAATGGTGGTTAGGGTTGTTTTGGGCCCTCGGGTTGTCTTGACCTCTAGTGGTGGTGTTGTTGGCCATAACGGAATTGCGGGCGGTGGCAATGGCAGTGCATCCGGTGTTCGTAAAGTCGGTCGTGTCGGCACGGTTGCTACCGGTGGCGGCGCTAAAGTCAGTATGCTTCTTGGGTGGCTAGGGTTTGCTTCATGCCCTAGGGTTATCTTTGGGCTTGAGTGTGGGCTTCGTAGCCCACTCTTGCGTTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

15.42

Weight (kDa)

6.55

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 37, 159, 171, 174, 290, 294, 360
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 274
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 5 cut(s) 36, 66, 70, 131, 134
AgeI ACCGGT 1 cut(s) 353
AlwI GGATC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 3 cut(s) 27, 235, 274
ApaI GGGCCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 34
AsiGI ACCGGT 1 cut(s) 353
AspA2I CCTAGG 1 cut(s) 410
AspLEI GCGC 2 cut(s) 8, 365
AspS9I GGNCC 2 cut(s) 235, 236
AsuHPI GGTGA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 240
AvrII CCTAGG 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BalI TGGCCA 1 cut(s) 276
BanII GRGCYC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 17, 94
BfaI CTAG 4 cut(s) 198, 258, 392, 411
BfoI RGCGCY 2 cut(s) 9, 366
BisI GCNGC 3 cut(s) 35, 172, 361
BlnI CCTAGG 1 cut(s) 410
BlsI GCNGC 3 cut(s) 36, 173, 362
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 235, 236
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 4 cut(s) 42, 136, 169, 320
BpuEI CTTGAG 1 cut(s) 449
BsaJI CCNNGG 3 cut(s) 90, 239, 410
BsaWI WCCGGW 2 cut(s) 314, 353
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 66, 70, 131, 134
Bse118I RCCGGY 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 307
BseDI CCNNGG 3 cut(s) 90, 239, 410
BseGI GGATG 1 cut(s) 311
BseLI CCNNNNNNNGG 5 cut(s) 36, 66, 70, 131, 134
BseMI GCAATG 1 cut(s) 307
BseRI GAGGAG 2 cut(s) 107, 114
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 1 cut(s) 46
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 3 cut(s) 29, 237, 276
BshTI ACCGGT 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 2 cut(s) 315, 354
BslI CCNNNNNNNGG 5 cut(s) 36, 66, 70, 131, 134
BsnI GGCC 3 cut(s) 29, 237, 276
BsoBI CYCGRG 1 cut(s) 240
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 21, 46
BspACI CCGC 7 cut(s) 37, 159, 171, 174, 290, 294, 360
BspANI GGCC 3 cut(s) 29, 237, 276
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 90, 239, 410
BssMI GATC 2 cut(s) 21, 46
BssT1I CCWWGG 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 57, 292
BstF5I GGATG 1 cut(s) 311
BstH2I RGCGCY 2 cut(s) 9, 366
BstHHI GCGC 2 cut(s) 8, 365
BstKTI GATC 2 cut(s) 24, 49
BstMBI GATC 2 cut(s) 21, 46
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 12, 76
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 3 cut(s) 29, 237, 276
BtgZI GCGATG 2 cut(s) 30, 156
BtsCI GGATG 1 cut(s) 311
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 57, 292
CfoI GCGC 2 cut(s) 8, 365
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 2 cut(s) 235, 236
Csp6I GTAC 1 cut(s) 210
CspAI ACCGGT 1 cut(s) 353
CviAII CATG 1 cut(s) 405
CviQI GTAC 1 cut(s) 210
DpnI GATC 2 cut(s) 23, 48
DpnII GATC 2 cut(s) 21, 46
EaeI YGGCCR 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 1 cut(s) 408
FaiI YATR 3 cut(s) 279, 377, 406
FatI CATG 1 cut(s) 404
FauI CCCGC 2 cut(s) 30, 283
Fnu4HI GCNGC 3 cut(s) 35, 172, 361
FokI GGATG 1 cut(s) 298
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 3 cut(s) 35, 172, 361
FspBI CTAG 4 cut(s) 198, 258, 392, 411
GlaI GCGC 2 cut(s) 7, 364
GluI GCNGC 3 cut(s) 35, 172, 361
HaeII RGCGCY 2 cut(s) 9, 366
HaeIII GGCC 3 cut(s) 29, 237, 276
HapII CCGG 2 cut(s) 315, 354
HhaI GCGC 2 cut(s) 8, 365
Hin1II CATG 1 cut(s) 408
Hin6I GCGC 2 cut(s) 6, 363
HinP1I GCGC 2 cut(s) 6, 363
HpaII CCGG 2 cut(s) 315, 354
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 51, 91
Hpy188III TCNNGA 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 76
Hsp92II CATG 1 cut(s) 408
HspAI GCGC 2 cut(s) 6, 363
Kzo9I GATC 2 cut(s) 21, 46
LpnPI CCDG 6 cut(s) 56, 69, 135, 192, 328, 367
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 4 cut(s) 42, 136, 169, 320
MaeI CTAG 4 cut(s) 198, 258, 392, 411
MalI GATC 2 cut(s) 23, 48
MboI GATC 2 cut(s) 21, 46
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 239
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 1 cut(s) 285
MluNI TGGCCA 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 8 cut(s) 40, 85, 131, 135, 149, 182, 249, 265
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 37, 171
MspI CCGG 2 cut(s) 315, 354
MwoI GCNNNNNNNGC 2 cut(s) 12, 76
NdeII GATC 2 cut(s) 21, 46
NlaIII CATG 1 cut(s) 408
NlaIV GGNNCC 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 353
PkrI GCNGC 3 cut(s) 36, 173, 362
PspN4I GGNNCC 1 cut(s) 237
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 235, 236
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SatI GCNGC 3 cut(s) 35, 172, 361
Sau3AI GATC 2 cut(s) 21, 46
Sau96I GGNCC 2 cut(s) 235, 236
SduI GDGCHC 1 cut(s) 239
SetI ASST 2 cut(s) 193, 257
SfaNI GCATC 4 cut(s) 42, 136, 169, 320
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 1 cut(s) 285
SsiI CCGC 7 cut(s) 37, 159, 171, 174, 290, 294, 360
SspMI CTAG 4 cut(s) 198, 258, 392, 411
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 346
TaqII GACCGA 1 cut(s) 320
TasI AATT 1 cut(s) 285
TauI GCSGC 2 cut(s) 174, 363
TscAI CASTG 1 cut(s) 313
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 2 cut(s) 201, 297
TspRI CASTG 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XmaJI CCTAGG 1 cut(s) 410
XspI CTAG 4 cut(s) 198, 258, 392, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.