Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016428

Physical Location & Seq

Genomic Coordinates Forward (+)

4807796 .. 4810688

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031404

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAAGCCATCGACAATGAGATAGAGGCCTCGTTGCGGCTGGTGGGATTTGATGCCAGACTTCCCTTGGCTGGTGGAGACGGTGATGCTGGTGGAGGAGGTGGTATCGGCTGCAGTGATGCTGAAAAAGGTGCTTCTAGCCAATTTGTTCCAATGGTTAGGGTTGTCTTGAGCCCTAATGGTGGTGATGTTGGCTATGGCGGCATTGCGGGCTATGTTAATGGCAATGTAGACGGTCTTGGTAAAGCCAAAGGTGTCAGCACTGTTGCTAACGGCGGCGGCGCTAAAGTCAGTCTGCTTCTAGGGTGGCTAGGGCTTGATTCATGCCCTATGTTTATCTTTGGGCTTGAATGCTTGTTTACAAATGTGAATACATTGGGAGAAGCATGGAACTCATTGGATACACTGTTTGGAAAGCTTAAAGATTCTTGCTTGTTGCTTGACAGTGATACTGAGGGATATGTCAGAATGCATGATCTTGTATGTCATGTTGCTAACGGGATTGCATACAGGGATCATCACATGTTTTCAATAGAATATGGAGTTTCTATGAGTAGTAAAGATACTAGAAGCTACAAAGAAATTGAACAGGAGGTCTTGGAAGAGGAAGAGAACCTTCATGTTGAGAGTGAGACTACCGTAAAATACTTCCTCTTTAACGAAAAGTGTTGTGATAGATTTGTAGTAATAGTGTCAAGCGACGGAGATGATGGTGCTGATGTTGTAGGAAATGAGATTGTTTTCAACCGCTTGCAACGTTTGGTGCTTGTTAATCTACCAAGTCTACAGGATTTTCACTCCGGAAATTTCACAGTCAAATTTCCGTCATCCATGACCTTAGATGTAAAACACTGCCCAATCATCAAGTTGAAGATATCCCCTAATAAGGTCCTCCTGCCACCACAAATAAAGGCTAAGAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

309

Amino Acids

33.14

Weight (kDa)

4.91

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0353441
rosa_laevigata	RLG00000002898 RLG00000006469 RLG00000026860 RLG00000028660 RLG00000031404 RLG00000032241 RLG00000033705 RLG00000035889
rosa_multiflora	Rmu_sc0000795.1_g000071
rosa_roxburghii	Rroxscaffold_1G00069430
rosa_samantha	Rh3BG274900 Rh4CG376400 Rh5AG050300 Rh5AG385000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	231, 784
AccIII	TCCGGA	1 cut(s)	800
AciI	CCGC	6 cut(s)	37, 201, 209, 276, 279, 748
AclI	AACGTT	1 cut(s)	757
AclWI	GGATC	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	805, 818
AfiI	CCNNNNNNNGG	4 cut(s)	36, 71, 182, 886
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	5 cut(s)	350, 531, 587, 745, 871
AluBI	AGCT	2 cut(s)	418, 573
AluI	AGCT	2 cut(s)	418, 573
Alw26I	GTCTC	2 cut(s)	72, 626
AlwI	GGATC	1 cut(s)	522
Aor13HI	TCCGGA	1 cut(s)	800
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	805, 818
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	889
AsuHPI	GGTGA	2 cut(s)	95, 197
AvaII	GGWCC	1 cut(s)	889
BanII	GRGCYC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	17, 704
BceAI	ACGGC	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	72, 626
BfaI	CTAG	4 cut(s)	138, 302, 311, 567
BfmI	CTRYAG	2 cut(s)	112, 785
BfoI	RGCGCY	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	5 cut(s)	38, 112, 202, 277, 280
BlsI	GCNGC	5 cut(s)	39, 113, 203, 278, 281
Bme18I	GGWCC	1 cut(s)	889
BmgT120I	GGNCC	1 cut(s)	889
BmsI	GCATC	3 cut(s)	43, 76, 109
BpuEI	CTTGAG	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 71, 182, 886
Bse3DI	GCAATG	2 cut(s)	204, 232
BseAI	TCCGGA	1 cut(s)	800
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	827
BseLI	CCNNNNNNNGG	4 cut(s)	36, 71, 182, 886
BseMI	GCAATG	2 cut(s)	204, 232
BseMII	CTCAG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	801
BslI	CCNNNNNNNGG	4 cut(s)	36, 71, 182, 886
BsmAI	GTCTC	2 cut(s)	72, 626
BsmBI	CGTCTC	1 cut(s)	72
BsmI	GAATGC	2 cut(s)	356, 474
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp13I	TCCGGA	1 cut(s)	800
Bsp143I	GATC	2 cut(s)	475, 514
BspACI	CCGC	6 cut(s)	37, 201, 209, 276, 279, 748
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	445
BspEI	TCCGGA	1 cut(s)	800
BspMAI	CTGCAG	1 cut(s)	116
BspPI	GGATC	1 cut(s)	522
BsrDI	GCAATG	2 cut(s)	204, 232
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	475, 514
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	7 cut(s)	83, 236, 265, 408, 446, 640, 814
Bst6I	CTCTTC	2 cut(s)	597, 603
BstC8I	GCNNGC	2 cut(s)	211, 752
BstDEI	CTNAG	3 cut(s)	453, 838, 915
BstF5I	GGATG	1 cut(s)	827
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	2 cut(s)	478, 517
BstMAI	GTCTC	2 cut(s)	72, 626
BstMBI	GATC	2 cut(s)	475, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 210
BstNSI	RCATGY	1 cut(s)	526
BstSFI	CTRYAG	2 cut(s)	112, 785
BstV1I	GCAGC	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	827
BtsI	GCAGTG	2 cut(s)	121, 850
BtsIMutI	CAGTG	5 cut(s)	121, 261, 404, 451, 850
Cac8I	GCNNGC	2 cut(s)	211, 752
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	889
CviAII	CATG	7 cut(s)	324, 387, 473, 488, 523, 620, 832
DdeI	CTNAG	3 cut(s)	453, 838, 915
DpnI	GATC	2 cut(s)	477, 516
DpnII	GATC	2 cut(s)	475, 514
Eam1104I	CTCTTC	2 cut(s)	597, 603
EarI	CTCTTC	2 cut(s)	597, 603
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	1 cut(s)	889
EcoO109I	RGGNCCY	1 cut(s)	889
EcoRV	GATATC	1 cut(s)	876
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	7 cut(s)	327, 390, 476, 491, 526, 623, 835
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FatI	CATG	7 cut(s)	323, 386, 472, 487, 522, 619, 831
FauI	CCCGC	1 cut(s)	202
FblI	GTMKAC	2 cut(s)	231, 784
Fnu4HI	GCNGC	5 cut(s)	38, 112, 202, 277, 280
FokI	GGATG	1 cut(s)	814
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	5 cut(s)	38, 112, 202, 277, 280
FspBI	CTAG	4 cut(s)	138, 302, 311, 567
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	5 cut(s)	38, 112, 202, 277, 280
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	801
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	7 cut(s)	327, 390, 476, 491, 526, 623, 835
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	2 cut(s)	320, 425
HpaII	CCGG	1 cut(s)	801
HphI	GGTGA	2 cut(s)	95, 197
Hpy166II	GTNNAC	3 cut(s)	232, 360, 785
Hpy188I	TCNGA	1 cut(s)	467
Hpy188III	TCNNGA	2 cut(s)	169, 801
Hpy8I	GTNNAC	3 cut(s)	232, 360, 785
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	1 cut(s)	626
HpyCH4III	ACNGT	7 cut(s)	83, 236, 265, 408, 446, 640, 814
HpyCH4IV	ACGT	1 cut(s)	757
HpyCH4V	TGCA	4 cut(s)	114, 472, 506, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 210
HpyF3I	CTNAG	3 cut(s)	453, 838, 915
HpySE526I	ACGT	1 cut(s)	757
Hsp92II	CATG	7 cut(s)	327, 390, 476, 491, 526, 623, 835
HspAI	GCGC	1 cut(s)	282
Kpn2I	TCCGGA	1 cut(s)	800
Kzo9I	GATC	2 cut(s)	475, 514
LpnPI	CCDG	9 cut(s)	26, 57, 70, 75, 496, 575, 773, 814, 908
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	3 cut(s)	43, 76, 109
MaeI	CTAG	4 cut(s)	138, 302, 311, 567
MaeII	ACGT	1 cut(s)	757
MalI	GATC	2 cut(s)	477, 516
MboI	GATC	2 cut(s)	475, 514
MboII	GAAGA	3 cut(s)	614, 620, 883
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	4 cut(s)	143, 582, 805, 818
MnlI	CCTC	9 cut(s)	19, 40, 89, 92, 448, 586, 598, 662, 902
Mph1103I	ATGCAT	1 cut(s)	474
MroI	TCCGGA	1 cut(s)	800
MseI	TTAA	4 cut(s)	219, 420, 657, 771
MspI	CCGG	1 cut(s)	801
Mva1269I	GAATGC	2 cut(s)	356, 474
MwoI	GCNNNNNNNGC	2 cut(s)	201, 210
NdeII	GATC	2 cut(s)	475, 514
NlaIII	CATG	7 cut(s)	327, 390, 476, 491, 526, 623, 835
NsiI	ATGCAT	1 cut(s)	474
NspI	RCATGY	1 cut(s)	526
PceI	AGGCCT	1 cut(s)	29
PciI	ACATGT	1 cut(s)	522
PctI	GAATGC	2 cut(s)	356, 474
PfeI	GAWTC	2 cut(s)	320, 425
PkrI	GCNGC	5 cut(s)	39, 113, 203, 278, 281
PpuMI	RGGWCCY	1 cut(s)	889
PscI	ACATGT	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	757
Psp5II	RGGWCCY	1 cut(s)	889
PspPI	GGNCC	1 cut(s)	889
PspPPI	RGGWCCY	1 cut(s)	889
PstI	CTGCAG	1 cut(s)	116
SaqAI	TTAA	4 cut(s)	219, 420, 657, 771
SatI	GCNGC	5 cut(s)	38, 112, 202, 277, 280
Sau3AI	GATC	2 cut(s)	475, 514
Sau96I	GGNCC	1 cut(s)	889
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	3 cut(s)	43, 76, 109
SfcI	CTRYAG	2 cut(s)	112, 785
SinI	GGWCC	1 cut(s)	889
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	4 cut(s)	143, 582, 805, 818
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	6 cut(s)	37, 201, 209, 276, 279, 748
SspMI	CTAG	4 cut(s)	138, 302, 311, 567
StuI	AGGCCT	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	7 cut(s)	83, 236, 265, 408, 446, 640, 814
TaiI	ACGT	1 cut(s)	760
TaqI	TCGA	1 cut(s)	12
TasI	AATT	4 cut(s)	143, 582, 805, 818
TauI	GCSGC	4 cut(s)	40, 204, 279, 282
TfiI	GAWTC	2 cut(s)	320, 425
Tru1I	TTAA	4 cut(s)	219, 420, 657, 771
Tru9I	TTAA	4 cut(s)	219, 420, 657, 771
TscAI	CASTG	5 cut(s)	121, 268, 411, 451, 857
TseI	GCWGC	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	312, 608
TspGWI	ACGGA	2 cut(s)	717, 813
TspRI	CASTG	5 cut(s)	121, 268, 411, 451, 857
VpaK11BI	GGWCC	1 cut(s)	889
XapI	RAATTY	2 cut(s)	805, 818
XceI	RCATGY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmiI	GTMKAC	2 cut(s)	231, 784
XspI	CTAG	4 cut(s)	138, 302, 311, 567
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.