RLG00000006469

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016428
Physical Location & Seq
Forward (+)
7486786 .. 7487346
561 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006469

Sequence Viewer

Length: 306 bp
ATGGTGACTGCTCAACATCGACCTCTGGGTCAGATTGTGCCACTCTGCTCTTTCTCTTGGTTTTTTGATCCAGGTGGAGGTGGTGATGTTGTCGGCGGCGGCGATGCTGATGGAGGTGCTCCTAGCCAATTTGTTCCAAAGGTGGTTAAGGTTGTTTTGGGCCCTCGGGTTGTCTTGAGCCCTAGTGGTGGTGATGTTGGCCATGGTAGGATTCCAGGCTGTGGCAATGGCATTGCAGACAGTGTTGGTAAAGCCGGTGGTGTCGGCACTGTTGCTAAATGCGGCGGTGCTAAAGATTATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

9.83

Weight (kDa)

7.74

Isoelectric Point (pI)

23.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 27
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 4 cut(s) 96, 99, 282, 285
AclWI GGATC 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 199
AfiI CCNNNNNNNGG 3 cut(s) 77, 188, 221
AjnI CCWGG 2 cut(s) 70, 214
Alw21I GWGCWC 1 cut(s) 121
AlwI GGATC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 2 cut(s) 160, 199
ApaI GGGCCC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 160, 161
AsuHPI GGTGA 3 cut(s) 16, 95, 203
AvaI CYCGRG 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 164
BalI TGGCCA 1 cut(s) 201
BanII GRGCYC 2 cut(s) 164, 182
Bbv12I GWGCWC 1 cut(s) 121
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 72, 216
BfaI CTAG 2 cut(s) 123, 183
BisI GCNGC 3 cut(s) 97, 100, 283
BlsI GCNGC 3 cut(s) 98, 101, 284
Bme1390I CCNGG 2 cut(s) 72, 216
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 160, 161
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 2 cut(s) 72, 216
BmsI GCATC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 164, 202
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 188, 221
Bse118I RCCGGY 1 cut(s) 254
Bse3DI GCAATG 2 cut(s) 231, 232
BseBI CCWGG 2 cut(s) 72, 216
BseDI CCNNGG 2 cut(s) 164, 202
BseLI CCNNNNNNNGG 3 cut(s) 77, 188, 221
BseMI GCAATG 2 cut(s) 231, 232
BseSI GKGCMC 1 cut(s) 164
BshFI GGCC 2 cut(s) 162, 201
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 3 cut(s) 77, 188, 221
BsnI GGCC 2 cut(s) 162, 201
BsoBI CYCGRG 1 cut(s) 165
Bsp120I GGGCCC 1 cut(s) 160
Bsp1286I GDGCHC 3 cut(s) 121, 164, 182
Bsp143I GATC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 4 cut(s) 96, 99, 282, 285
BspANI GGCC 2 cut(s) 162, 201
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 1 cut(s) 62
BsrDI GCAATG 2 cut(s) 231, 232
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 164, 202
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 72, 216
Bst4CI ACNGT 2 cut(s) 242, 271
BstDSI CCRYGG 1 cut(s) 202
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstNI CCWGG 2 cut(s) 72, 216
BstSCI CCNGG 2 cut(s) 70, 214
BstSLI GKGCMC 1 cut(s) 164
BsuRI GGCC 2 cut(s) 162, 201
BtgI CCRYGG 1 cut(s) 202
BtgZI GCGATG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 247, 267
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 160, 161
CviAII CATG 1 cut(s) 203
CviJI RGCY 6 cut(s) 126, 162, 180, 201, 219, 254
CviKI_1 RGCY 6 cut(s) 126, 162, 180, 201, 219, 254
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
DrdI GACNNNNNNGTC 1 cut(s) 27
DseDI GACNNNNNNGTC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 164, 182
Eco88I CYCGRG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 70, 214
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 2 cut(s) 164, 182
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 206
FaiI YATR 2 cut(s) 204, 300
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 97, 100, 283
FriOI GRGCYC 2 cut(s) 164, 182
Fsp4HI GCNGC 3 cut(s) 97, 100, 283
FspBI CTAG 2 cut(s) 123, 183
GluI GCNGC 3 cut(s) 97, 100, 283
HaeIII GGCC 2 cut(s) 162, 201
HapII CCGG 1 cut(s) 255
Hin1II CATG 1 cut(s) 206
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 255
HphI GGTGA 3 cut(s) 16, 95, 203
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 175
HpyCH4III ACNGT 2 cut(s) 242, 271
HpyCH4V TGCA 1 cut(s) 236
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 11, 57, 84, 201, 228, 268
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 123, 183
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MhlI GDGCHC 3 cut(s) 121, 164, 182
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 1 cut(s) 128
MluNI TGGCCA 1 cut(s) 201
MnlI CCTC 4 cut(s) 33, 71, 107, 174
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 72, 216
MvaI CCWGG 2 cut(s) 72, 216
NcoI CCATGG 1 cut(s) 202
NdeII GATC 1 cut(s) 67
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 4
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 1 cut(s) 211
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 3 cut(s) 98, 101, 284
Psp6I CCWGG 2 cut(s) 70, 214
PspGI CCWGG 2 cut(s) 70, 214
PspN4I GGNNCC 1 cut(s) 162
PspOMI GGGCCC 1 cut(s) 160
PspPI GGNCC 2 cut(s) 160, 161
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 97, 100, 283
Sau3AI GATC 1 cut(s) 67
Sau96I GGNCC 2 cut(s) 160, 161
ScrFI CCNGG 2 cut(s) 72, 216
SduI GDGCHC 3 cut(s) 121, 164, 182
SetI ASST 6 cut(s) 25, 76, 82, 118, 144, 153
SfaNI GCATC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 1 cut(s) 128
SsiI CCGC 4 cut(s) 96, 99, 282, 285
SspMI CTAG 2 cut(s) 123, 183
StyD4I CCNGG 2 cut(s) 70, 214
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 242, 271
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 128
TauI GCSGC 3 cut(s) 99, 102, 285
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 2 cut(s) 247, 274
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspRI CASTG 2 cut(s) 247, 274
Van91I CCANNNNNTGG 1 cut(s) 221
XspI CTAG 2 cut(s) 123, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.